Emily K. Makowski

Also affiliated with BioSurfaces (United States)

MedicineBiochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 23 papers. Top paper: “Co-optimization of therapeutic antibody affinity and specificity using machine learning models that generalize to novel mutational space”.

Co-optimization of therapeutic antibody affinity and specificity using machine learning models that generalize to novel mutational space

Nature Communications(2022)10.1038/s41467-022-31457-3

N/A

4.2DataRank · unranked

160 citations

Patrick C. Kinnunen, Jie Huang, Lina Wu, Matthew D. Smith, Tiexin Wang +8 more

Engineered Multivalent Nanobodies Potently and Broadly Neutralize SARS‐CoV‐2 Variants

Advanced Therapeutics(2021)10.1002/adtp.202100099

N/A

1.3DataRank · unranked

44 citations

John S. Schardt, Alec A. Desai, Emily K. Makowski, Matthew D. Smith, Ghasidit Pornnoppadol +5 more

Highly sensitive detection of antibody nonspecific interactions using flow cytometry

mAbs(2021)10.1080/19420862.2021.1951426

N/A

1.1DataRank · unranked

47 citations

Lina Wu, Alec A. Desai, Peter M. Tessier, Emily K. Makowski

Reduction of therapeutic antibody self-association using yeast-display selections and machine learning

mAbs(2022)10.1080/19420862.2022.2146629

N/A

1.0DataRank · unranked

28 citations

Hongwei Chen, Matthew Lambert, Eric M. Bennett, Nicole S. Eschmann, Yulei Zhang +10 more

Rational affinity maturation of anti-amyloid antibodies with high conformational and sequence specificity

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100508

N/A

0.786DataRank · unranked

34 citations

Matthew D. Smith, Yulei Zhang, Emily K. Makowski, Julia E. Gerson, Edward Ionescu +9 more

Position-Specific Enrichment Ratio Matrix scores predict antibody variant properties from deep sequencing data

Bioinformatics(2023)10.1093/bioinformatics/btad446

N/A

0.573DataRank · unranked

10 citations

Marshall Case, Emily K. Makowski, Peter M. Tessier, Matthew D. Smith

Lab-in-the-loop therapeutic antibody design with deep learning

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.19.639050

N/A

0.416DataRank · unranked

15 citations

Isidro Hötzel, Samuel D. Stanton, Ryan L. Kelly, Robert G. Alberstein, Emily K. Makowski +68 more

Reliable energy-based antibody humanization and stabilization

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.14.503891

N/A

0.211DataRank · unranked

2 citations

Lev Khmelnitsky, Razi Khalaila, Noa Yeshaya, Ashish Noronha, Moshit Lindzen +10 more

Improving antibody drug development using bionanotechnology

Current Opinion in Biotechnology(2021)10.1016/j.copbio.2021.10.027

N/A

0DataRank · unranked

11 citations

John S. Schardt, Peter M. Tessier, Emily K. Makowski

Discovery and characterization of high-affinity, potent SARS-CoV-2 neutralizing antibodies via single B cell screening

Scientific Reports(2021)10.1038/s41598-021-99401-x

N/A

0DataRank · unranked

25 citations

Ghasidit Pornnoppadol, Alec A. Desai, Kyung Soo Park, Jennifer M. Zupancic, Emily K. Makowski +8 more

Mutational analysis of SARS-CoV-2 variants of concern reveals key tradeoffs between receptor affinity and antibody escape

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010160

N/A

0DataRank · unranked

22 citations

John S. Schardt, Matthew D. Smith, Peter M. Tessier, Emily K. Makowski

Discovery-stage identification of drug-like antibodies using emerging experimental and computational methods

mAbs(2021)10.1080/19420862.2021.1895540

N/A

0DataRank · unranked

57 citations

Lina Wu, Priyanka Gupta, Peter M. Tessier, Emily K. Makowski

Optimization of therapeutic antibodies for reduced self-association and non-specific binding via interpretable machine learning

Nature Biomedical Engineering(2023)10.1038/s41551-023-01074-6

N/A

0DataRank · unranked

48 citations

Tiexin Wang, Jennifer M. Zupancic, Jie Huang, Lina Wu, John S. Schardt +5 more

Computational optimization of antibody humanness and stability by systematic energy-based ranking

Nature Biomedical Engineering(2023)10.1038/s41551-023-01079-1

N/A

0DataRank · unranked

39 citations

Lev Khmelnitsky, Razi Khalaila, Noa Yeshaya, Ashish Noronha, Moshit Lindzen +10 more

Simplifying complex antibody engineering using machine learning

Cell Systems(2023)10.1016/j.cels.2023.04.009

N/A

0DataRank · unranked

19 citations

Hsin-Ting Chen, Peter M. Tessier, Emily K. Makowski

Quantitative flow cytometric selection of tau conformational nanobodies specific for pathological aggregates

Frontiers in Immunology(2023)10.3389/fimmu.2023.1164080

N/A

0DataRank · unranked

11 citations

Matthew D. Smith, Hanna Trzeciakiewicz, Mary E. Skinner, Sean P. Ferris, Emily K. Makowski +6 more

Directed evolution of potent neutralizing nanobodies against SARS-CoV-2 using CDR-swapping mutagenesis

Cell chemical biology(2021)10.1016/j.chembiol.2021.05.019

N/A

0DataRank · unranked

59 citations

Alec A. Desai, John S. Schardt, Ghasidit Pornnoppadol, Emily K. Makowski, Matthew D. Smith +7 more

Flow cytometric isolation of drug-like conformational antibodies specific for amyloid fibrils

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.04.547698

N/A

0DataRank · unranked

5 citations

Jennifer M. Zupancic, Hanna Trzeciakiewicz, Julia E. Gerson, Kelly N. Dubois, Mary E. Skinner +14 more

Position-Specific Enrichment Ratio Matrix scores predict antibody variant properties from deep sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.10.548448

N/A

0DataRank · unranked

2 citations

Marshall Case, Emily K. Makowski, Peter M. Tessier, Matthew D. Smith

Quantitative flow cytometric selection of tau conformational nanobodies specific for pathological aggregates

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.13.540640

N/A

0DataRank · unranked

1 citations

Matthew D. Smith, Hanna Trzeciakiewicz, Mary E. Skinner, Sean P. Ferris, Emily K. Makowski +6 more

Reduction of monoclonal antibody viscosity using interpretable machine learning

mAbs(2024)10.1080/19420862.2024.2303781

N/A

0DataRank · unranked

34 citations

Hsin-Ting Chen, Tiexin Wang, Lina Wu, Jie Huang, Marissa Mock +6 more

Human antibody polyreactivity is governed primarily by the heavy-chain complementarity-determining regions

Cell Reports(2024)10.1016/j.celrep.2024.114801

N/A

0DataRank · unranked

15 citations

Yulei Zhang, Jie Huang, Manali Sawant, Matthew D. Smith, Nandhini Rajagopal +8 more

Directed evolution of drug-like Aβ conformation-specific antibodies

Frontiers in Immunology(2025)10.3389/fimmu.2025.1655893

N/A

0DataRank · unranked

1 citations

Matthew D. Smith, Jennifer M. Zupancic, Emily K. Makowski, Yulei Zhang, Julia E. Gerson +8 more