Jill P. Mesirov

Also affiliated with University of California San Diego Medical Center

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

59.8Author DataRank

Indexed papers

7in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 7 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Initial sequencing and comparative analysis of the mouse genome

Nature(2002)10.1038/nature01262

Top 1%

12.6DataRank

Top 1%7282 citations

Robert H. Waterston, Kerstin Lindblad‐Toh, Julien Lagarde, Josep F. Abril, PANKAJ AGARWAL +189 more

Papers

Driven by 49 papers — median percentile 99. Top paper: “Initial sequencing and comparative analysis of the mouse genome”.

Initial sequencing and comparative analysis of the mouse genome

Nature(2002)10.1038/nature01262

Top 1%

12.6DataRank

Top 1%7282 citations

Robert H. Waterston, Kerstin Lindblad‐Toh, Julien Lagarde, Josep F. Abril, PANKAJ AGARWAL +189 more

Comprehensive genomic characterization of squamous cell lung cancers

Nature(2012)10.1038/nature11404

Top 1%

11.0DataRank

Top 1%4036 citations

Gad Getz, Stephen E. Schumacher, Petar Stojanov, Chang‐Jiun Wu, Hailei Zhang +326 more

The Molecular Signatures Database Hallmark Gene Set Collection

Cell Systems(2015)10.1016/j.cels.2015.12.004

Top 1%

10.9DataRank

Top 1%14694 citations

Chet Birger, Helga Thorvaldsdottir, Mahmoud Ghandi, Jill P. Mesirov, Pablo Tamayo +1 more

Molecular signatures database (MSigDB) 3.0

Bioinformatics(2011)10.1093/bioinformatics/btr260

Top 1%

10.9DataRank

Top 1%7841 citations

Aravind Subramanian, Helga Thorvaldsdottir, Pablo Tamayo, Jill P. Mesirov, Reid M. Pinchback +1 more

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

Nature(2004)10.1038/nature03025

Top 2%

7.8DataRank

Top 2%2027 citations

Jean-Marc Aury, Frédéric Brunet, Jean-Louis Petit, Nicole Stange-Thomann, Evan Mauceli +69 more

Compendium of Immune Signatures Identifies Conserved and Species-Specific Biology in Response to Inflammation

Immunity(2016)10.1016/j.immuni.2015.12.006

Top 3%

6.4DataRank

Top 3%305 citations

Yan Tan, Arthur Liberzon, Pablo Tamayo, Sanchita Bhattacharya, Atul Janardhan Butte +3 more

GeNets: a unified web platform for network-based genomic analyses

Nature Methods(2018)10.1038/s41592-018-0039-6

N/A

2.4DataRank · unranked

63 citations

April Kim, Joseph Rosenbluh, Heiko Horn, Liraz Greenfeld, David An +21 more

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

Proceedings of the National Academy of Sciences(2005)10.1073/pnas.0506580102

N/A

1.6DataRank · unranked

55906 citations

Pablo Tamayo, Vamsi K. Mootha, Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette +6 more

PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

Nature Genetics(2003)10.1038/ng1180

N/A

1.4DataRank · unranked

10534 citations

Cecilia M. Lindgren, Karl-Fredrik Eriksson, Aravind Subramanian, Smita Sihag, Joseph Lehar +19 more

Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1

Cancer Cell(2010)10.1016/j.ccr.2009.12.020

N/A

1.3DataRank · unranked

7682 citations

Katherine A. Hoadley, Elizabeth Purdom, Victoria Wang, Yuan Qi, Matthew D. Wilkerson +31 more

Multiclass cancer diagnosis using tumor gene expression signatures

Proceedings of the National Academy of Sciences(2001)10.1073/pnas.211566398

N/A

1.1DataRank · unranked

2044 citations

Pablo Tamayo, Ryan Rifkin, Sayan Mukherjee, Chen-Hsiang Yeang, Michael Angelo +12 more

Whole-Genome Sequence Assembly for Mammalian Genomes: Arachne 2

Genome Research(2003)10.1101/gr.828403

N/A

0.829DataRank · unranked

251 citations

Jonathan Butler, Sante Gnerre, Evan Mauceli, Kerstin Lindblad-Toh, Jill P. Mesirov +3 more

Transcriptional Profiling of Plasmodium falciparum Parasites from Patients with Severe Malaria Identifies Distinct Low vs. High Parasitemic Clusters

PLoS ONE(2012)10.1371/journal.pone.0040739

N/A

0.464DataRank · unranked

21 citations

Nathalie Pochet, Malkie Krupka, Chris Williams, Karl Seydel, Terrie E. Taylor +8 more

In vivo profiles in malaria are consistent with a novel physiological state

Proceedings of the National Academy of Sciences(2009)10.1073/pnas.0904478106

N/A

0.292DataRank · unranked

6 citations

Elizabeth Winzeler, Jill P. Mesirov, Prisca Liberali, Dyann F. Wirth, Johanna P. Daily +2 more

Genomics to Notebook (g2nb): extending the electronic notebook to address the challenges of bioinformatics analysis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.04.535621

Top 70%

0.146DataRank

Top 70%1 citations

Thorin Tabor, John Liefeld, Jayadev Joshi, Forrest Kim, Helga Thorvaldsdóttir +3 more

GeNets: A unified web platform for network-based analyses of genomic data

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/196303

N/A

0.104DataRank · unranked

1 citations

April Kim, Joseph Rosenbluh, Heiko Horn, Liraz Greenfeld, David An +21 more

The GPCR–Gαs–PKA signaling axis promotes T cell dysfunction and cancer immunotherapy failure

Nature Immunology(2023)10.1038/s41590-023-01529-7

N/A

0DataRank · unranked

87 citations

Bryan S. Yung, Farhoud Faraji, Robert Saddawi‐Konefka, Zhiyong Wang, Alexander T. Wenzel +16 more

Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastoma

Nature Genetics(2023)10.1038/s41588-023-01551-3

N/A

0DataRank · unranked

66 citations

Jens Luebeck, Sunita Sridhar, Ivy Tsz-Lo Wong, Deobrat Dixit, Shanqing Wang +43 more

Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response

Nature Communications(2023)10.1038/s41467-023-38271-5

N/A

0DataRank · unranked

65 citations

Timothy J. Sears, Victoria H. Wu, Eva Pérez‐Guijarro, Hyo Kim, A. Castro +24 more

3D genome mapping identifies subgroup-specific chromosome conformations and tumor-dependency genes in ependymoma

Nature Communications(2023)10.1038/s41467-023-38044-0

N/A

0DataRank · unranked

26 citations

Aylin Camgöz, Owen Chapman, Sameena Wani, Donglim Esther Park, Jens-Martin Hübner +46 more

Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

Nature Protocols(2023)10.1038/s41596-023-00892-x

N/A

0DataRank · unranked

25 citations

Ashley Tsang, Jacob T. Mitchell, David Zhou, Julia Bowden, Emily F. Davis-Marcisak +13 more

NMF Clustering: Accessible NMF-based Clustering Utilizing GPU Acceleration

Journal of Bioinformatics and Systems Biology(2023)10.26502/jbsb.5107072

N/A

0DataRank · unranked

6 citations

Edwin Huang, Alexander T. Wenzel, Kenneth Yoshimoto, Ashwyn K. Sharma, Jason K. Sicklick +3 more

NMFClustering: Accessible NMF-based clustering utilizing GPU acceleration

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.16.545370

N/A

0DataRank · unranked

2 citations

Edwin Huang, Alexander T. Wenzel, Kenneth Yoshimoto, Ashwyn K. Sharma, Jason K. Sicklick +3 more

Deciphering the Functional Roles of Individual Cancer Alleles Across Comprehensive Cancer Genomic Studies

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.14.567106

N/A

0DataRank · unranked

1 citations

Stephanie Ting, Bartholomew Tam, Timothy V. Pham, Michael Reich, Jill P. Mesirov +3 more

Data from Location of Gastrointestinal Stromal Tumor (GIST) in the Stomach Predicts Tumor Mutation Profile and Drug Sensitivity

(2023)10.1158/1078-0432.c.6530702

N/A

0DataRank · unranked

0 citations

Jorge de la Torre, Nikki S. IJzerman, Thomas L. Sutton, Beiqun Zhao, Tahsin M. Khan +25 more

Data from Location of Gastrointestinal Stromal Tumor (GIST) in the Stomach Predicts Tumor Mutation Profile and Drug Sensitivity

(2023)10.1158/1078-0432.c.6530702.v1

N/A

0DataRank · unranked

0 citations

Jorge de la Torre, Nikki S. IJzerman, Thomas L. Sutton, Beiqun Zhao, Tahsin M. Khan +25 more

Transforming Cancer Research through Informatics

Cancer Discovery(2024)10.1158/2159-8290.cd-24-0604

N/A

0DataRank · unranked

3 citations

Dinah S. Singer, Jill P. Mesirov, Juli Klemm

MICAL2 Promotes Pancreatic Cancer Growth and Metastasis

Cancer Research(2025)10.1158/0008-5472.can-24-0744

N/A

0DataRank · unranked

8 citations

Sohini Khan, Asimina S. Courelli, Ponmathi Panneerpandian, Deepa Sheik Pran Babu, Evangeline Mose +26 more

A Systematic Review with a Demonstrative Case of KIT and DOG-1 Expressing Gastrointestinal Stromal Tumors Harboring ETV6–NTRK3 Fusions

Clinical Cancer Research(2025)10.1158/1078-0432.ccr-24-3203

N/A

0DataRank · unranked

5 citations

Mark Antkowiak, Robert J. Mallory, T. Mark Doherty, Mojgan Hosseini, Jill P. Mesirov +3 more

Inactivation of Histone Chaperone HIRA Unmasks a Link Between Normal Embryonic Development of Melanoblasts and Maintenance of Adult Melanocyte Stem Cells

Aging Cell(2025)10.1111/acel.70070

N/A

0DataRank · unranked

2 citations

Rouven Arnold, Karthic Swaminathan, Kathryn Gilroy, Alexander T. Wenzel, Anthony B. Lagnado +16 more

Extrachromosomal DNA associates with poor survival across a broad spectrum of childhood solid tumors

medRxiv(2025)10.1101/2025.07.22.24308163

N/A

0DataRank · unranked

3 citations

Sunita Sridhar, Eugene Yui‐Ching Chow, Rishaan Kenkre, Jonathan Kirkland, Aditi Dutta +23 more

Genomics to Notebook (g2nb): Extending the Electronic Notebook to Address the Challenges of Bioinformatics Analysis

Journal of Bioinformatics and Systems Biology(2025)10.26502/jbsb.5107096

N/A

0DataRank · unranked

0 citations

Thorin Tabor, John Liefeld, Jayadev Joshi, Forrest Kim, Edwin Huang +4 more

Single Nuclei-Derived Molecular Subtypes of Gastrointestinal Stromal Tumors Correlate with Clinicopathologic Features and Predict Clinical Outcomes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.21.647322

N/A

0DataRank · unranked

0 citations

Alexander T. Wenzel, John Y. Jun, Diwakar Guragain, Chih‐Min Tang, Mark Antkowiak +19 more

igv-reports: Embedding interactive genomic visualizations in HTML reports to aid variant review

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.29.685397

N/A

0DataRank · unranked

0 citations

Helga Thorvaldsdóttir, Jill P. Mesirov, James Robinson

Oncogenic 3D genome conformations identify novel therapeutic targets in ependymoma

Research Square(2020)10.21203/rs.3.rs-88331/v1

N/A

0DataRank · unranked

0 citations

Aylin Camgöz, Donglim Esther Park, Owen Chapman, Jens-Martin Hübner, Abhijit Chakraborty +33 more

An integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR and NF1

UNC Libraries(2020)10.17615/qy3p-zp42

N/A

0DataRank · unranked

0 citations

Richard K. Wilson, Katherine A. Hoadley, Gad Getz, Heidi S. Feiler, Jann N. Sarkaria +28 more

A FZD7-specific Antibody–Drug Conjugate Induces Ovarian Tumor Regression in Preclinical Models

Molecular Cancer Therapeutics(2021)10.1158/1535-7163.mct-21-0548

N/A

0DataRank · unranked

39 citations

Christina Wu, Pooja R. Sonavane, Edwin F. Juarez, Stephen Adams, Jason Ross +7 more

Location of Gastrointestinal Stromal Tumor (GIST) in the Stomach Predicts Tumor Mutation Profile and Drug Sensitivity

Clinical Cancer Research(2021)10.1158/1078-0432.ccr-21-1221

N/A

0DataRank · unranked

32 citations

Jorge de la Torre Cantero, Nikki S. IJzerman, Thomas L. Sutton, Beiqun Zhao, Tahsin M. Khan +25 more

KITlow Cells Mediate Imatinib Resistance in Gastrointestinal Stromal Tumor

Molecular Cancer Therapeutics(2021)10.1158/1535-7163.mct-20-0973

N/A

0DataRank · unranked

17 citations

Hyunho Yoon, Stephanie Ting, Chih‐Min Tang, Mayra Yebra, Alexander T. Wenzel +6 more

A phenotypically supervised single-cell analysis protocol to study within-cell-type heterogeneity of cultured mammalian cells

STAR Protocols(2021)10.1016/j.xpro.2021.100561

N/A

0DataRank · unranked

2 citations

Kıvılcım Öztürk, Ted Liefeld, Michael Reich, Jill P. Mesirov, Hannah Carter +2 more

The landscape of extrachromosomal circular DNA in medulloblastoma

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.18.464907

N/A

0DataRank · unranked

13 citations

Jens Luebeck, Sameena Wani, Ashutosh Tiwari, Meghana S. Pagadala, Shanqing Wang +26 more

Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.14.436660

N/A

0DataRank · unranked

1 citations

Victoria H. Wu, Eva Pérez‐Guijarro, Hyo Kim, Andrea Castro, James V. Talwar +20 more

igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV)

Bioinformatics(2022)10.1093/bioinformatics/btac830

N/A

0DataRank · unranked

535 citations

Helga Thorvaldsdóttir, Douglass Turner, Jill P. Mesirov, James Robinson

Lymphatic-preserving treatment sequencing with immune checkpoint inhibition unleashes cDC1-dependent antitumor immunity in HNSCC

Nature Communications(2022)10.1038/s41467-022-31941-w

N/A

0DataRank · unranked

176 citations

Aoife O’Farrell, Farhoud Faraji, Lauren Clubb, Michael M. Allevato, Shawn M. Jensen +17 more

Single-cell characterization of step-wise acquisition of carboplatin resistance in ovarian cancer

npj Systems Biology and Applications(2022)10.1038/s41540-022-00230-z

N/A

0DataRank · unranked

6 citations

Devora Champa, Hrishi Venkatesh, Si Sun, Cheng‐Yu Tsai, Jill P. Mesirov +4 more

Lymphatic-Preserving Treatment Sequencing with Immune Checkpoint Inhibition Unleashes cDC1-Dependent Antitumor Immunity in HNSCC

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.01.478744

N/A

0DataRank · unranked

9 citations

Aoife O’Farrell, Farhoud Faraji, Lauren Clubb, Michael M. Allevato, Nana-Ama A.S. Anang +16 more

Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R, and GenePattern Notebook implementations of CoGAPS

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.09.499398

N/A

0DataRank · unranked

6 citations

Ashley Tsang, Jacob T. Mitchell, Emily F. Davis-Marcisak, Thomas D. Sherman, Ted Liefeld +11 more

Inactivation of histone chaperone HIRA unmasks a link between normal embryonic development of melanoblasts and maintenance of adult melanocyte stem cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.22.489166

N/A

0DataRank · unranked

0 citations

Karthic Swaminathan, Kathryn Gilroy, Alexander T. Wenzel, Anthony B. Lagnado, Kristina Kirschner +11 more

Extending support for mouse data in the Molecular Signatures Database (MSigDB)

Nature Methods(2023)10.1038/s41592-023-02014-7

N/A

0DataRank · unranked

475 citations

Jill M. Recla, David Eby, Helga Thorvaldsdóttir, Carol J. Bult, Jill P. Mesirov +1 more

Jill P. Mesirov

Indexed papers

Top data-sharing exemplar

Papers