Anne‐Catrin Uhlemann

Columbia University Irving Medical Center

Also affiliated with Office of Infectious Diseases, CNR de la Résistance aux Antibiotiques

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 59 papers. Top paper: “Pseudomonas aeruginosa Utilizes Host-Derived Itaconate to Redirect Its Metabolism to Promote Biofilm Formation”.

Pseudomonas aeruginosa Utilizes Host-Derived Itaconate to Redirect Its Metabolism to Promote Biofilm Formation

Cell Metabolism(2020)10.1016/j.cmet.2020.04.017

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199 citations

Kalle Liimatta, Tania Wong Fok Lung, Blanche L. Fields, Danielle Ahn, David Chen +8 more

Gut microbiota, endotoxemia, inflammation, and oxidative stress in patients with heart failure, left ventricular assist device, and transplant

The Journal of Heart and Lung Transplantation(2020)10.1016/j.healun.2020.02.004

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118 citations

Bruno Bohn, Mojdeh Nasiri, A.M. Zuver, D. Onat, E.A. Royzman +20 more

Carbapenemase-producing Enterobacterales causing secondary infections during the COVID-19 crisis at a New York City hospital

Journal of Antimicrobial Chemotherapy(2020)10.1093/jac/dkaa466

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101 citations

Medini K. Annavajhala, Thomas H. McConville, Donald Dietz, Sherif Shoucri, Justin Laracy +7 more

Inhibition of Resistance-Refractory P. falciparum Kinase PKG Delivers Prophylactic, Blood Stage, and Transmission-Blocking Antiplasmodial Activity

Cell chemical biology(2020)10.1016/j.chembiol.2020.04.001

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91 citations

James M. Murithi, Charisse Flerida A. Pasaje, Sonja Ghidelli‐Disse, Louis Dwomoh, Megan J. Bird +26 more

Predicting Phenotypic Polymyxin Resistance in Klebsiella pneumoniae through Machine Learning Analysis of Genomic Data

mSystems(2020)10.1128/msystems.00656-19

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71 citations

Oliver J. Bear Don’t Walk, Itsik Pe’er, Nicholas P. Tatonetti, Anton Y. Peleg, Anne‐Catrin Uhlemann +1 more

CrrB Positively Regulates High-Level Polymyxin Resistance and Virulence in Klebsiella pneumoniae

Cell Reports(2020)10.1016/j.celrep.2020.108313

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58 citations

Medini K. Annavajhala, Marla J. Giddins, Nenad Maćešić, Carmen M. Herrera, Felix D. Rozenberg +6 more

Cerebrospinal Analysis in Patients With COVID-19

Open Forum Infectious Diseases(2020)10.1093/ofid/ofaa501

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21 citations

Vivian Ssonko, Carla F. Kim, Rachelle Dugue, Greer Waldrop, Prajwal Ciryam +11 more

The Role of Amino Acid Substitution in HepT Toward Menaquinone Isoprenoid Chain Length Definition and Lysocin E Sensitivity in Staphylococcus aureus

Frontiers in Microbiology(2020)10.3389/fmicb.2020.02076

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10 citations

Atmika Paudel, Hiroshi Hamamoto, Anne‐Catrin Uhlemann, Kazuhisa Sekimizu, Suresh Panthee

Alteration of menaquinone isoprenoid chain length and antibiotic sensitivity by single amino acid substitution in HepT

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.11.089490

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1 citations

Atmika Paudel, Hiroshi Hamamoto, Anne‐Catrin Uhlemann, Kazuhisa Sekimizu, Suresh Panthee

COVID-19 neuropathology at Columbia University Irving Medical Center/New York Presbyterian Hospital

Brain(2021)10.1093/brain/awab148

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398 citations

Emily Happy Miller, Michael Glendinning, Osama Al‐Dalahmah, Matei A. Banu, Amelia K. Boehme +29 more

Characterization of Bacterial and Fungal Infections in Hospitalized Patients With Coronavirus Disease 2019 and Factors Associated With Health Care-Associated Infections

Open Forum Infectious Diseases(2021)10.1093/ofid/ofab201

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164 citations

Thomas H. McConville, Donald Dietz, Jason Zucker, Michael May, Brian Nelson +7 more

Staphylococcus aureus induces an itaconate-dominated immunometabolic response that drives biofilm formation

Nature Communications(2021)10.1038/s41467-021-21718-y

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151 citations

Tania Wong Fok Lung, Felix Dach, Medini K. Annavajhala, Stanislaw J. Gabryszewski, Ryan A. Groves +13 more

Emergence and expansion of SARS-CoV-2 B.1.526 after identification in New York

Nature(2021)10.1038/s41586-021-03908-2

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140 citations

Hiroshi Mohri, Pengfei Wang, Manoj S. Nair, Jason Zucker, Zizhang Sheng +8 more

Bipolar disorder and the gut microbiome: A systematic review

Bipolar Disorders(2021)10.1111/bdi.13049

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65 citations

Stephanie Cheung, Evan Lieberman, Shaohua Hu, J. John Mann, Anne‐Catrin Uhlemann +2 more

An acquired acyltransferase promotes Klebsiella pneumoniae ST258 respiratory infection

Cell Reports(2021)10.1016/j.celrep.2021.109196

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29 citations

Gitanjali Bhushan, Thomas H. McConville, Medini K. Annavajhala, Rajesh K. Soni, Tania Wong Fok Lung +8 more

Clinico-histopathologic and single-nuclei RNA-sequencing insights into cardiac injury and microthrombi in critical COVID-19

JCI Insight(2021)10.1172/jci.insight.154633

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29 citations

Michelle L. Hulke, Nobuaki Fukuma, Stephanie Golob, Robert Zilinyi, Zhipeng Zhou +20 more

Intrathymic differentiation of natural antibody-producing plasma cells in human neonates

Nature Communications(2021)10.1038/s41467-021-26069-2

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26 citations

R. Glenn King, Pranay Dogra, Chloe Dufeu, Sarah B. See, Alexander M. Chong +7 more

Antibiotic Exposure, Not Alloreactivity, Is the Major Driver of Microbiome Changes in Hematopoietic Cell Transplantation

Transplantation and Cellular Therapy(2021)10.1016/j.jtct.2021.12.015

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23 citations

Heekuk Park, Cristian Taborda, Christian Gordillo, Markus Y. Mapara, Amer Assal +3 more

An efficient and versatile CRISPR-Cas9 system for genetic manipulation of multi-drug resistant Klebsiella pneumoniae

STAR Protocols(2021)10.1016/j.xpro.2021.100373

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20 citations

Marla J. Giddins, Anne‐Catrin Uhlemann, Thomas H. McConville

Associations between urinary 3-indoxyl sulfate, a gut microbiome-derived biomarker, and patient outcomes after intensive care unit admission

Journal of Critical Care(2021)10.1016/j.jcrc.2021.01.005

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18 citations

Katja Dettmer, Medini K. Annavajhala, David H. Chong, Anne‐Catrin Uhlemann, Julian A. Abrams +3 more

Prevalence of Gastrointestinal Pathogens Detected by Multiplex Polymerase Chain Reaction in a Prospective Cohort of Men Who Have Sex With Men Taking Human Immunodeficiency Virus Preexposure Prophylaxis—New York City, 2019–2020

Open Forum Infectious Diseases(2021)10.1093/ofid/ofab411

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9 citations

Jason Zucker, Elijah LaSota, Mabel Lopez, Rebecca Spicehandler, Caroline Carnevale +9 more

Prolonged severe acute respiratory syndrome coronavirus 2 persistence, attenuated immunologic response, and viral evolution in a solid organ transplant patient

American Journal of Transplantation(2021)10.1111/ajt.16837

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10 citations

Michelle Chang, Medini K. Annavajhala, Hiroshi Mohri, Lihong Liu, Jayesh Shah +12 more

In Vitro Cytotoxicity and Clinical Correlates of MRSA Bacteremia

Antimicrobial Agents and Chemotherapy(2021)10.1128/aac.01559-21

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6 citations

Eloise D. Austin, Wenjing Geng, Qiuhu Shi, Divya Balasubramanian, Christine J. Kubin +3 more

Supervised Machine Learning Approach to Identify Early Predictors of Poor Outcome in Patients with COVID-19 Presenting to a Large Quaternary Care Hospital in New York City

Journal of Clinical Medicine(2021)10.3390/jcm10163523

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3 citations

Angela Gomez‐Simmonds, Lawrence J. Purpura, Sherif Shoucri, Elijah LaSota, Nicholas E. Morley +20 more

Spa Typing of Staphylococcus aureus in a Neonatal Intensive Care Unit During Routine Surveillance

Journal of the Pediatric Infectious Diseases Society(2021)10.1093/jpids/piab014

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7 citations

Alexandra Hill‐Ricciuti, Nicole Kelly, Maria Messina, Daniel A. Green, Wenjing Geng +6 more

Emergence and Expansion of the SARS-CoV-2 Variant B.1.526 Identified in New York

medRxiv(2021)10.1101/2021.02.23.21252259

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157 citations

Hiroshi Mohri, Pengfei Wang, Manoj S. Nair, Jason Zucker, Zizhang Sheng +8 more

COVID-19 Neuropathology at Columbia University Irving Medical Center/New York Presbyterian Hospital

medRxiv(2021)10.1101/2021.03.16.21253167

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50 citations

Emily Happy Miller, Michael Glendinning, Osama Al‐Dalahmah, Matei A. Banu, Amelia K. Boehme +29 more

Molecular Pathophysiology of Cardiac Injury and Cardiac Microthrombi in Fatal COVID-19: Insights from Clinico-histopathologic and Single Nuclei RNA Sequencing Analyses

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.27.453843

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1 citations

Michelle L. Hulke, Michael I. Brener, Stephanie Golob, Robert Zilinyi, Zhipeng Zhou +20 more

Klebsiella pneumoniae induces host metabolic stress that promotes tolerance to pulmonary infection

Cell Metabolism(2022)10.1016/j.cmet.2022.03.009

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105 citations

Daniel Charytonowicz, Kristin G. Beaumont, Shivang S. Shah, Shwetha Hara Sridhar, Claire L. Gorrie +25 more

Impact of a Rapid Molecular Test for Klebsiella pneumoniae Carbapenemase and Ceftazidime-Avibactam Use on Outcomes After Bacteremia Caused by Carbapenem-Resistant Enterobacterales

Clinical Infectious Diseases(2022)10.1093/cid/ciac354

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93 citations

Liang Chen, Angela Gomez‐Simmonds, Jamie Marino, Gregory Weston, Tanaya Bhowmick +17 more

Structural basis of lipopolysaccharide maturation by the O-antigen ligase

Nature(2022)10.1038/s41586-022-04555-x

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59 citations

Rie Nygaard, Owen N. Vickery, Satchal K. Erramilli, Carmen M. Herrera, Thomas H. McConville +18 more

Topical Glaucoma Therapy Is Associated With Alterations of the Ocular Surface Microbiome

Investigative Ophthalmology & Visual Science(2022)10.1167/iovs.63.9.32

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41 citations

Karina Somohano, Christine Zemsky, Anne‐Catrin Uhlemann, Jeffrey M. Liebmann, George A. Cioffi +4 more

Staphylococcal phosphatidylglycerol antigens activate human T cells via CD1a

Nature Immunology(2022)10.1038/s41590-022-01375-z

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33 citations

Marcin Wegrecki, Tan‐Yun Cheng, Yi‐Ling Chen, B. Sallee, Reka Chakravarthy +20 more

Inflammation and Mortality in COVID-19 Hospitalized Patients With and Without Type 2 Diabetes

The Journal of Clinical Endocrinology & Metabolism(2022)10.1210/clinem/dgac003

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10 citations

Wen-Hsuan W. Lin, Jason Zucker, Renu Nandakumar, Anne‐Catrin Uhlemann, Shuang Wang +2 more

Reduction in Risk of Death Among Patients Admitted With COVID-19 Between the First and Second Epidemic Waves in New York City

Open Forum Infectious Diseases(2022)10.1093/ofid/ofac436

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1 citations

Jason Zucker, Yanhan Shen, Simian Huang, Qiheng Yan, Medini K. Annavajhala +5 more

Reduction in risk of death among patients admitted with COVID-19 between first and second epidemic waves in New York City

medRxiv(2022)10.1101/2022.03.29.22273044

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1 citations

Jason Zucker, Yanhan Shen, Simian Huang, Qiheng Yan, Medini K. Annavajhala +5 more

Partial ORF1ab Gene Target Failure with Omicron BA.2.12.1

medRxiv(2022)10.1101/2022.04.25.22274187

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0 citations

David R. Peaper, Brendan J. Kelly, Frederic D. Bushman, Andrew D. Marques, Hriju Adhikari +18 more

Dietary tryptophan deficiency promotes gut RORγt+ Treg cells at the expense of Gata3+ Treg cells and alters commensal microbiota metabolism

Cell Reports(2023)10.1016/j.celrep.2023.112135

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53 citations

Katherine A. Kaiser, Kenia de los Santos-Alexis, Heekuk Park, Anne‐Catrin Uhlemann, Daniel H.D. Gray +2 more

Mitigating the risk of antimalarial resistance via covalent dual-subunit inhibition of the Plasmodium proteasome

Cell chemical biology(2023)10.1016/j.chembiol.2023.03.002

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29 citations

Barbara H. Stokes, Kurt E. Ward, Kate J. Fairhurst, Charisse Flerida A. Pasaje, Tomas Yeo +21 more

Mapping the genomic landscape of multidrug resistance in Plasmodium falciparum and its impact on parasite fitness

Science Advances(2023)10.1126/sciadv.adi2364

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29 citations

Tomas Yeo, Davin Hong, Melanie J. Shears, Leila S. Ross, Kurt E. Ward +19 more

The gut microbiome, short chain fatty acids, and related metabolites in cystic fibrosis patients with and without colonic adenomas

Journal of Cystic Fibrosis(2023)10.1016/j.jcf.2023.01.013

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17 citations

Felix D. Rozenberg, Medini K. Annavajhala, Heekuk Park, Emily DiMango, Claire Keating +3 more

Capsular Polysaccharide Is Essential for the Virulence of the Antimicrobial-Resistant Pathogen Enterobacter hormaechei

mBio(2023)10.1128/mbio.02590-22

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23 citations

Andrew I. Perault, Sabrina I. Giacometti, Alexis G. Sommerfield, Ashley Dumont, Keenan A. Lacey +15 more

Mapping the genomic landscape of multidrug resistance in Plasmodium falciparum and its impact on parasite fitness

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.02.543338

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5 citations

Tomas Yeo, Davin Hong, Melanie J. Shears, Leila S. Ross, Kurt E. Ward +17 more

Periodontitis and brain magnetic resonance imaging markers of Alzheimer's disease and cognitive aging

Alzheimer s & Dementia(2024)10.1002/alz.13683

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37 citations

Adam M. Brickman, Bin Cheng, Sandra Burkett, Heekuk Park, Medini K. Annavajhala +7 more

Systematic in vitro evolution in Plasmodium falciparum reveals key determinants of drug resistance

Science(2024)10.1126/science.adk9893

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26 citations

Karla P. Godinez‐Macias, Daisy Chen, John Okombo, Vandana Thathy, Xiu Cheng +43 more

An evaluation of in utero polycyclic aromatic hydrocarbon exposure on the neonatal meconium microbiome

Environmental Research(2024)10.1016/j.envres.2024.120053

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4 citations

Miranda J. Spratlen, Lingsheng Wen, Dwayne Seeram, Heekuk Park, Lehyla Calero +3 more

Inhibitors of malaria parasite cyclic nucleotide phosphodiesterases block asexual blood-stage development and mosquito transmission

Science Advances(2024)10.1126/sciadv.adq1383

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4 citations

Antima Gupta, Laura Drought, Avnish Patel, John Okombo, Mariëtte van der Watt +42 more

Genomic epidemiology of carbapenem-resistant Enterobacterales at a New York City hospital over a 10-year period reveals complex plasmid-clone dynamics and evidence for frequent horizontal transfer ofblaKPC

Genome Research(2024)10.1101/gr.279355.124

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13 citations

Medini K. Annavajhala, Dwayne Seeram, Todd W Hokunson, Heekuk Park, Anne‐Catrin Uhlemann +1 more

Plasmodium falciparum quinine resistance is multifactorial and includes a role for the drug/metabolite transporters PfCRT and DMT1

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.27.615529

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0 citations

Sachel Mok, Tomas Yeo, Melanie J. Shears, Jin H. Jeon, Sunil Kumar Narwal +23 more

Acinetobacter baumannii treatment strategies: a review of therapeutic challenges and considerations

Antimicrobial Agents and Chemotherapy(2025)10.1128/aac.01063-24

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29 citations

Christopher Garzia, Anne‐Catrin Uhlemann, Christine J. Kubin

Loss of GalNAc-T14 links O-glycosylation defects to alterations in B cell homing in IgA nephropathy

Journal of Clinical Investigation(2025)10.1172/jci181164

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15 citations

Nicholas J. Steers, Yifu Li, Elena Sánchez, Miguel Verbitsky, Isabel Robbins +30 more

Volumetric, Microfluidic Plasmonic RT‐PCR

Small Methods(2025)10.1002/smtd.202401988

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6 citations

Kelia Human, Robert Stanciu, A. Q. Liu, Jack Doucette, Ayi Agboglo +11 more

Inferring asymptomatic carriers of antimicrobial-resistant organisms in hospitals using genomic, microbiological and patient mobility data

Nature Communications(2025)10.1038/s41467-025-65241-w

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4 citations

Dwayne Seeram, Seth Blumberg, Bo Shopsin, Anne‐Catrin Uhlemann, Jeffrey Shaman +1 more

A Randomized Clinical Trial Evaluating Lactiplantibacillus Plantarum for the Prevention of GI aGvHD: A Report From the Children’s Oncology Group (ACCL1633)

Transplantation and Cellular Therapy(2025)10.1016/j.jtct.2025.04.009

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3 citations

William Collier, Hyung Seok Park, Jeffery J. Auletta, Christopher C. Dvorak, Avery August +11 more

Urobiota analysis and genome-wide association study in pediatric recurrent urinary tract infections and vesicoureteral reflux

JCI Insight(2025)10.1172/jci.insight.199689

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1 citations

Pavan Khosla, Daniel L. Bivona, Atlas Khan, Yask Gupta, Heekuk Park +19 more

Estimating nosocomial transmission of micro-organisms in hospital settings using patient records and culture data

Epidemics(2025)10.1016/j.epidem.2025.100817

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2 citations

Rami Yaari, Tal Robin, L Wen, Jason Zucker, Anne‐Catrin Uhlemann +3 more

Collateral hypersensitivity between ZY19489 and piperaquine neutralizes PfCRT-mediated drug efflux and Plasmodium falciparum resistance

Research Square(2025)10.21203/rs.3.rs-7697517/v1

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0 citations

John Okombo, Tolla Ndiaye, Tarrick Qahash, Igor M. R. Moura, Eva Gil‐Iturbe +24 more

Shared Binding Site but Divergent Resistance Profiles Uncover Novel Resistance Mechanisms in Plasmodium HSP90 Inhibitors

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.30.684657

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0 citations

Amanda K. Lukens, Mariana Laureano de Souza, Alex Foy, Jason Hsiao, Tolla Ndiaye +18 more

A generalizable cross-continent prediction of esophageal squamous cell carcinoma using the oral microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.23.690048

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0 citations

Wenlong Carl Chen, Leanne Prodehl, T Marumo, M. Khan, Christopher G. Mathew +8 more