Kasper D. Hansen

Johns Hopkins Medicine

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

18.8Author DataRank

Indexed papers

12in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 12 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Genetic effects on gene expression across human tissues

Nature(2017)10.1038/nature24277

Top 1%

10.1DataRank

Top 1%4706 citations

Barbara E. Engelhardt, Stephen B. Montgomery, Sara Mostafavi, Ayellet V. Segrè, Hailei Zhang +227 more

Papers

Driven by 50 papers — median percentile 48. Top paper: “Genetic effects on gene expression across human tissues”.

Genetic effects on gene expression across human tissues

Nature(2017)10.1038/nature24277

Top 1%

10.1DataRank

Top 1%4706 citations

Barbara E. Engelhardt, Stephen B. Montgomery, Sara Mostafavi, Ayellet V. Segrè, Hailei Zhang +227 more

Transcriptomic signatures across human tissues identify functional rare genetic variation

Science(2020)10.1126/science.aaz5900

N/A

5.0DataRank · unranked

166 citations

Benjamin J. Strober, Jonah Einson, Nathan S. Abell, François Aguet, Alvaro N. Barbeira +183 more

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space

Cell Genomics(2022)10.1016/j.xgen.2021.100085

N/A

3.9DataRank · unranked

132 citations

Anthony Philippakis, Enis Afgan, Eric Banks, Vincent J. Carey, Robert J. Carroll +95 more

A vast resource of allelic expression data spanning human tissues

Genome Biology(2020)10.1186/s13059-020-02122-z

Top 8%

2.7DataRank

Top 8%147 citations

François Aguet, Pejman Mohammadi, Kristin G. Ardlie, Anthony Philippakis, Leanne Haggerty +159 more

nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes

Nature Communications(2023)10.1038/s41467-023-39748-z

N/A

2.6DataRank · unranked

133 citations

Arkajyoti Saha, Abhirup Datta, Kasper D. Hansen, Stephanie C. Hicks, Lukas M. Weber

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

Science(2010)10.1126/science.1198374

Top 9%

2.4DataRank

Top 9%1089 citations

Sushmita Roy, Jason Ernst, Peter V. Kharchenko, Yanxiao Zhang, Richard S. Sandstrom +172 more

Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits

Genome biology(2021)10.1186/s13059-021-02335-w

Top 17%

1.2DataRank

Top 17%37 citations

Peter F. Hickey, Adrian Idrizi, Rakel Tryggvadóttir, Colin M. Callahan, Kimberly Stephens +6 more

Human methylome variation across Infinium 450K data on the Gene Expression Omnibus

NAR Genomics and Bioinformatics(2021)10.1093/nargab/lqab025

Top 23%

0.865DataRank

Top 23%23 citations

Reid F. Thompson, Kasper D. Hansen, Abhinav Nellore, Sean K. Maden

A mammalian methylation array for profiling methylation levels at conserved sequences

Nature Communications(2022)10.1038/s41467-022-28355-z

N/A

0.809DataRank · unranked

219 citations

Amin Haghani, Michael J. Thompson, Matteo Pellegrini, Soo Bin Kwon, Ha Vu +13 more

Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease

Cell(2021)10.1016/j.cell.2021.03.050

N/A

0.804DataRank · unranked

212 citations

Daniel C. Nachun, Nicole M. Ferraro, Michael J. Gloudemans, Abhiram S. Rao, Craig Smail +168 more

Leveraging the Mendelian disorders of the epigenetic machinery to systematically map functional epigenetic variation

eLife(2021)10.7554/elife.65884

N/A

0.795DataRank · unranked

31 citations

Leandros Boukas, Li Zhang, Genay Pilarowski, Jenny Jiang, Allison Kalinousky +3 more

Universal prediction of cell-cycle position using transfer learning

Genome biology(2022)10.1186/s13059-021-02581-y

N/A

0.735DataRank · unranked

133 citations

Genevieve L. Stein-O’Brien, Jonathan J. Augustin, Jared Slosberg, Giovanni A. Carosso, Briana L. Winer +5 more

A mammalian methylation array for profiling methylation levels at conserved sequences

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.07.425637

N/A

0.659DataRank · unranked

80 citations

Amin Haghani, Michael J. Thompson, Matteo Pellegrini, Soo Bin Kwon, Ha Vu +10 more

A mouse model of Weaver syndrome displays overgrowth and excess osteogenesis reversible with KDM6A/6B inhibition

JCI Insight(2023)10.1172/jci.insight.173392

N/A

0.640DataRank · unranked

20 citations

Wanying Lin, Ryan C. Riddle, Priyanka Kushwaha, Leandros Boukas, Hans T. Björnsson +3 more

A functional genomics pipeline to identify high-value asthma and allergy CpGs in the human methylome

Journal of Allergy and Clinical Immunology(2023)10.1016/j.jaci.2022.12.828

N/A

0.529DataRank · unranked

33 citations

Emma E. Thompson, Britney A. Helling, Lyndsey E. Shorey‐Kendrick, Pieter Faber, Tebeb Gebretsadik +17 more

Comprehensive DNA Methylation Analysis Indicates That Pancreatic Intraepithelial Neoplasia Lesions Are Acinar-Derived and Epigenetically Primed for Carcinogenesis

Cancer Research(2023)10.1158/0008-5472.can-22-4052

N/A

0.477DataRank · unranked

23 citations

Brian M. Mears, H. Carlo Maurer, Adrian Idrizi, Kasper D. Hansen, Elizabeth D. Thompson +5 more

Co-expression analysis is biased by a mean-correlation relationship

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.13.944777

N/A

0.416DataRank · unranked

15 citations

Stephanie C. Hicks, Kasper D. Hansen, Yi Wang

Universal prediction of cell cycle position using transfer learning

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.06.438463

N/A

0.406DataRank · unranked

14 citations

Genevieve L. Stein-O’Brien, Jonathan J. Augustin, Jared Slosberg, Giovanni A. Carosso, Briana L. Winer +5 more

recountmethylation enables flexible analysis of public blood DNA methylation array data

Bioinformatics Advances(2023)10.1093/bioadv/vbad020

Top 51%

0.348DataRank

Top 51%6 citations

Brian Walsh, Kyle Ellrott, Kasper D. Hansen, Reid F. Thompson, Abhinav Nellore +1 more

Genotype prediction of 336,463 samples from public expression data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.21.562237

Top 53%

0.318DataRank

Top 53%5 citations

Christopher Lo, Siruo Wang, Jeffrey T. Leek, Kasper D. Hansen, Afrooz Razi

Human methylome variation across Infinium 450K data on the Gene Expression Omnibus

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.17.387548

Top 54%

0.306DataRank

Top 54%3 citations

Reid F. Thompson, Kasper D. Hansen, Abhinav Nellore, Sean K. Maden

Orchestrating Spatial Transcriptomics Analysis with Bioconductor

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.20.688607

Top 59%

0.260DataRank

Top 59%3 citations

Yixing Dong, Ilaria Billato, Peiying Cai, Martin Emons, Samuel Gunz +29 more

A Functional Genomics Pipeline to Identify High-Value Asthma and Allergy CpGs in the Human Methylome

medRxiv(2022)10.1101/2022.05.19.22275204

N/A

0.190DataRank · unranked

2 citations

Emma E. Thompson, Britney A. Helling, Lyndsey E. Shorey‐Kendrick, Pieter Faber, Tebeb Gebretsadik +17 more

Newborn blood DNA methylation and childhood asthma: findings from the ECHO program

International Journal of Epidemiology(2025)10.1093/ije/dyaf067

Top 66%

0.180DataRank

Top 66%2 citations

Krystin Jones, Carole Ober, Anne P. Starling, William A. Gower, Leonard B. Bacharier +35 more

Neuron-specific chromatin disruption at CpG islands and aging-related regions in Kabuki syndrome mice

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.01.551456

N/A

0.165DataRank · unranked

2 citations

Teresa Romeo Luperchio, Afrooz Razi, Kasper D. Hansen, Hans T. Björnsson, Leandros Boukas

Single Cell Spatial Transcriptomics Reveals Immunotherapy-Driven Bone Marrow Niche Remodeling in AML

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.24.634753

N/A

0.165DataRank · unranked

2 citations

Molly A. Bingham, Julius Raimund Herzog, Abigail Wong-Rolle, Laura W. Dillon, Meghali Goswami +13 more

Compartmap enables inference of higher-order chromatin structure in individual cells from scRNA-seq and scATAC-seq

bioRxiv (Cold Spring Harbor Laboratory)10.1101/2021.05.17.444465

N/A

0.126DataRank · unranked

1 citations

Jean-Philippe Fortin, Kasper D. Hansen, Hui Shen, Timothy J. Triche, Benjamin K. Johnson

Human brain region-specific variably methylated regions (VMRs) are enriched for heritability of distinct neuropsychiatric traits

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.02.425010

Top 78%

0.104DataRank

Top 78%1 citations

Peter F. Hickey, Adrian Idrizi, Rakel Tryggvadóttir, Colin M. Callahan, Kimberly Stephens +6 more

Aggregation of recount3 RNA-seq data improves inference of consensus and tissue-specific gene coexpression networks

Genome Research(2025)10.1101/gr.280808.125

N/A

0DataRank · unranked

0 citations

Princy Parsana, Rebecca Keener, Kasper D. Hansen, Alexis Battle, Prashanthi Ravichandran

Metabolic effects of air pollution exposure and reversibility

Journal of Clinical Investigation(2020)10.1172/jci137315

N/A

0DataRank · unranked

82 citations

Bongsoo Park, Rengasamy Palanivel, Vinesh Vinayachandran, Jeffrey A. Deiuliis, Roopesh Singh Gangwar +8 more

Promoter CpG Density Predicts Downstream Gene Loss-of-Function Intolerance

The American Journal of Human Genetics(2020)10.1016/j.ajhg.2020.07.014

N/A

0DataRank · unranked

17 citations

Hans T. Björnsson, Kasper D. Hansen, Leandros Boukas

Natural selection acts on epigenetic marks

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.04.187880

N/A

0DataRank · unranked

10 citations

Afrooz Razi, Hans T. Björnsson, Kasper D. Hansen, Leandros Boukas

Leveraging the Mendelian Disorders of the Epigenetic Machinery to Systematically Map Functional Epigenetic Variation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.08.373456

N/A

0DataRank · unranked

1 citations

Leandros Boukas, Zhang Li, Genay Pilarowski, Jenny Jiang, Allison Kalinousky +3 more

Promoter CpG density predicts downstream gene loss-of-function intolerance

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.15.936351

N/A

0DataRank · unranked

0 citations

Hans T. Björnsson, Kasper D. Hansen, Leandros Boukas

Improving Metabolic Health Through Precision Dietetics in Mice

UNC Libraries(2020)10.17615/4y2s-bq44

N/A

0DataRank · unranked

0 citations

Daniel Pomp, Selene Howe, Amie Perry, Kasper D. Hansen, Brynn H. Voy +9 more

Placenta DNA methylation at ZNF300 is associated with fetal sex and placental morphology

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.05.433992

N/A

0DataRank · unranked

8 citations

Shan V. Andrews, Kelly M. Bakulski, Jason I. Feinberg, Rakel Tryggvadóttir, Ruofan Yao +8 more

Addressing the mean-correlation relationship in co-expression analysis

PLoS Computational Biology(2022)10.1371/journal.pcbi.1009954

N/A

0DataRank · unranked

23 citations

Stephanie C. Hicks, Kasper D. Hansen, Yi Wang

Pumping the brakes on RNA velocity – understanding and interpreting RNA velocity estimates

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.19.494717

N/A

0DataRank · unranked

17 citations

Genevieve L. Stein-O’Brien, Leandros Boukas, Loyal A. Goff, Kasper D. Hansen, Shijie Zheng

recountmethylation enables flexible analysis of public blood DNA methylation array data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.19.492680

Top 100%

0DataRank

Top 100%0 citations

Brian Walsh, Kyle Ellrott, Kasper D. Hansen, Reid F. Thompson, Abhinav Nellore +1 more

Pumping the brakes on RNA velocity by understanding and interpreting RNA velocity estimates

Genome biology(2023)10.1186/s13059-023-03065-x

N/A

0DataRank · unranked

64 citations

Genevieve L. Stein-O’Brien, Leandros Boukas, Loyal A. Goff, Kasper D. Hansen, Shijie Zheng

Quantification and statistical modeling of droplet-based single-nucleus RNA-sequencing data

Biostatistics(2023)10.1093/biostatistics/kxad010

N/A

0DataRank · unranked

9 citations

Kasper D. Hansen, Stephanie C. Hicks, Albert Kuo

Precision pharmacological reversal of strain-specific diet-induced metabolic syndrome in mice informed by epigenetic and transcriptional regulation

PLoS Genetics(2023)10.1371/journal.pgen.1010997

N/A

0DataRank · unranked

3 citations

Adam Davidovich, Anna C. Salvador, Gabrielle C. Manno, Rakel Tryggvadóttir, Adrian Idrizi +7 more

Massively parallel single molecule tracking of sequence-dependent DNA mismatch repair in vivo

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.08.523062

N/A

0DataRank · unranked

5 citations

Jasmin Zarb, Sonisilpa Mohapatra, Chang-Ting Lin, James London, Kasper D. Hansen +3 more

Precision pharmacological reversal of genotype-specific diet-induced metabolic syndrome in mice informed by transcriptional regulation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.25.538156

N/A

0DataRank · unranked

0 citations

Adam Davidovich, Anna C. Salvador, Gabrielle C. Manno, Rakel Tryggvadóttir, Adrian Idrizi +7 more

Removing unwanted variation between samples in Hi-C experiments

Briefings in Bioinformatics(2024)10.1093/bib/bbae217

N/A

0DataRank · unranked

17 citations

Yunjiang Qiu, David U. Gorkin, Ming Hu, Kasper D. Hansen, Kipper Fletez‐Brant

Growth deficiency in a mouse model of Kabuki syndrome 2 bears mechanistic similarities to Kabuki syndrome 1

PLoS Genetics(2024)10.1371/journal.pgen.1011310

N/A

0DataRank · unranked

4 citations

Wanying Lin, Ryan C. Riddle, Sheetal Chopra, Jiyoung Kim, Leandros Boukas +4 more

Large-scale genotype prediction from RNA sequence data necessitates a new ethical and policy framework

Nature Genetics(2024)10.1038/s41588-024-01825-4

N/A

0DataRank · unranked

1 citations

Jeffrey T. Leek, Kasper D. Hansen, Afrooz Razi, Amy L. McGuire, Mary A. Majumder

Neuron-specific chromatin disruption at CpG islands and aging-related regions in Kabuki syndrome mice

Genome Research(2024)10.1101/gr.278416.123

N/A

0DataRank · unranked

3 citations

Teresa Romeo Luperchio, Afrooz Razi, Kasper D. Hansen, Hans T. Björnsson, Leandros Boukas

Aggregation of recount3 RNA-seq data improves inference of consensus and tissue-specific gene co-expression networks

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.20.576447

N/A

0DataRank · unranked

0 citations

Princy Parsana, Rebecca Keener, Kasper D. Hansen, Alexis Battle, Prashanthi Ravichandran

Common DNA sequence variation influences 3-dimensional conformation of the human genome

UNC Libraries(2024)10.17615/kmnm-q097

N/A

0DataRank · unranked

0 citations

Tristin Liu, Bing Ren, Joshua Chiou, Yun Li, Ming Hu +8 more

Kasper D. Hansen

Indexed papers

Top data-sharing exemplar

Papers