José Dávila-Velderrain

Environmental ScienceBiochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

30.8Author DataRank

Indexed papers

9in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 9 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The diploid genome sequence of an Asian individual

Nature(2008)10.1038/nature07484

Top 1%

14.7DataRank

Top 1%964 citations

Wei Wang, Alexandra P. Lewis, Alan Hodgkinson, Geng Tian, Laurie Goodman +75 more

Papers

Driven by 38 papers — median percentile 82. Top paper: “The diploid genome sequence of an Asian individual”.

The diploid genome sequence of an Asian individual

Nature(2008)10.1038/nature07484

Top 1%

14.7DataRank

Top 1%964 citations

Wei Wang, Alexandra P. Lewis, Alan Hodgkinson, Geng Tian, Laurie Goodman +75 more

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Perspectives on ENCODE

Nature(2020)10.1038/s41586-020-2449-8

N/A

4.7DataRank · unranked

227 citations

Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal, Bronwen Aken +95 more

NEBULA is a fast negative binomial mixed model for differential or co-expression analysis of large-scale multi-subject single-cell data

Communications Biology(2021)10.1038/s42003-021-02146-6

N/A

4.1DataRank · unranked

178 citations

Jose Davila-Velderrain, Tomokazu S. Sumida, David A. Hafler, Sharon L. R. Kardia, Alexander M. Kulminski +2 more

Single-cell multiregion dissection of Alzheimer’s disease

Nature(2024)10.1038/s41586-024-07606-7

Top 6%

4.0DataRank

Top 6%281 citations

Carles B. Adsera, Leyla Anne Akay, Ziting Xia, José Dávila-Velderrain, Ayesha P. Ng +15 more

Mapping the epigenomic and transcriptomic interplay during memory formation and recall in the hippocampal engram ensemble

Nature Neuroscience(2020)10.1038/s41593-020-00717-0

N/A

3.3DataRank · unranked

170 citations

Hiruy S. Meharena, Vishnu Dileep, Ravikiran M. Raju, Jose Davila-Velderrain, Amy Letao Zhang +7 more

Reconstruction of Cell-type-Specific Interactomes at Single-Cell Resolution

Cell Systems(2019)10.1016/j.cels.2019.10.007

N/A

2.4DataRank · unranked

80 citations

Jose Davila-Velderrain, Sharon L. R. Kardia, José Dávila-Velderrain, Shahin Mohammadi

Neurons burdened by DNA double-strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration

Science Advances(2022)10.1126/sciadv.abo4662

N/A

2.3DataRank · unranked

82 citations

Carles B. Adsera, Eloi Schmauch, José Dávila-Velderrain, Matheus B. Victor, Vishnu Dileep +9 more

Single-cell dissection of schizophrenia reveals neurodevelopmental-synaptic axis and transcriptional resilience

medRxiv(2020)10.1101/2020.11.06.20225342

N/A

2.1DataRank · unranked

59 citations

Shahin Mohammadi, Jose Davila-Velderrain, Sivan Subburaju, Daniel Reed Tso, Makayla Hourihan +3 more

Author Correction: Single-cell transcriptomic analysis of Alzheimer’s disease

Nature(2019)10.1038/s41586-019-1329-6

Top 11%

2.0DataRank

Top 11%63 citations

Jose Davila-Velderrain, Zhuyu Peng, Fan Gao, Shahin Mohammadi, Jennie Z. Young +12 more

A multiresolution framework to characterize single-cell state landscapes

Nature Communications(2020)10.1038/s41467-020-18416-6

N/A

1.6DataRank · unranked

66 citations

Jose Davila-Velderrain, Sharon L. R. Kardia, José Dávila-Velderrain, Shahin Mohammadi

Model-based assessment of replicability for genome-wide association meta-analysis

Nature Communications(2021)10.1038/s41467-021-21226-z

N/A

1.5DataRank · unranked

40 citations

Yu Jiang, Mengzhen Liu, J. Dylan Weissenkampen, Scott A. Eckert, Lina Yang +125 more

Single-cell multi-cohort dissection of the schizophrenia transcriptome

Science(2024)10.1126/science.adg5136

N/A

1.3DataRank · unranked

125 citations

Shahin Mohammadi, José Dávila-Velderrain, Sivan Subburaju, Daniel Reed Tso, Makayla Hourihan +196 more

Single-cell transcriptomic analysis of Alzheimer’s disease

Nature(2019)10.1038/s41586-019-1195-2

N/A

1.2DataRank · unranked

2670 citations

Jose Davila-Velderrain, Zhuyu Peng, Fan Gao, Shahin Mohammadi, Jennie Z. Young +12 more

A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex

Science(2024)10.1126/science.adh1938

Top 18%

1.2DataRank

Top 18%69 citations

Abby Spangler, Nicholas J. Eagles, Kelsey D. Montgomery, Sang Ho Kwon, Boyi Guo +90 more

Massively parallel characterization of regulatory elements in the developing human cortex

Science(2024)10.1126/science.adh0559

N/A

1.2DataRank · unranked

61 citations

Sean Whalen, Marilyn Steyert, Ryan Ziffra, Pawel F. Przytycki, Fumitaka Inoue +197 more

Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use

Nature Genetics(2019)10.1038/s41588-018-0307-5

N/A

1.1DataRank · unranked

2128 citations

Mengzhen Liu, HUNT All-In Psychiatry, Yu Jiang, Robbee Wedow, Yue Li +120 more

APOE4 impairs myelination via cholesterol dysregulation in oligodendrocytes

Nature(2022)10.1038/s41586-022-05439-w

N/A

0.927DataRank · unranked

483 citations

Leyla Anne Akay, José Dávila-Velderrain, Djuna von Maydell, Hansruedi Mathys, Shawn M. Davidson +26 more

Single-cell multi-cohort dissection of the schizophrenia transcriptome

medRxiv(2022)10.1101/2022.08.31.22279406

Top 22%

0.913DataRank

Top 22%29 citations

Shahin Mohammadi, Prashant S. Emani, Jose Davila-Velderrain, Sivan Subburaju, Daniel Reed Tso +11 more

Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration

Nature Communications(2019)10.1038/s41467-019-12780-8

N/A

0.880DataRank · unranked

352 citations

Shahin Mohammadi, Jose Davila-Velderrain, Brittany A. Goods, Tanina D. Cadwell, Yu Xing +8 more

Reconstruction of the human blood–brain barrier in vitro reveals a pathogenic mechanism of APOE4 in pericytes

Nature Medicine(2020)10.1038/s41591-020-0886-4

N/A

0.852DataRank · unranked

292 citations

Michael Bula, Jose Davila-Velderrain, Leyla Anne Akay, Lena Zhu, Alexander Frank +11 more

Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation

Neuron(2020)10.1016/j.neuron.2020.06.021

N/A

0.851DataRank · unranked

290 citations

Robert J. Fenster, Sergio Sebastian Pineda, Whitney S. Gibbs, Shahin Mohammadi, Jose Davila-Velderrain +12 more

A Bayesian approach to mediation analysis predicts 206 causal target genes in Alzheimer’s disease

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/219428

N/A

0.829DataRank · unranked

14 citations

Lucas D. Ward, Liang He, José Dávila-Velderrain, Philip L. De Jager, Sharon L. R. Kardia +2 more

Single-Cell Dissection of Schizophrenia Reveals Neurodevelopmental-Synaptic Link and Transcriptional Resilience Associated Cellular State

Biological Psychiatry(2021)10.1016/j.biopsych.2021.02.273

N/A

0.824DataRank · unranked

26 citations

Shahin Mohammadi, Jose Davila-Velderrain, Sivan Subburaju, Reed Tso, Makayla Hourihan +3 more

Cross-ancestry atlas of gene, isoform, and splicing regulation in the developing human brain

Science(2024)10.1126/science.adh0829

Top 26%

0.765DataRank

Top 26%50 citations

Michael Margolis, Rujia Dai, Pan Zhang, Pawel F. Przytycki, Daniel Vo +95 more

Transcriptomic sex differences in postmortem brain samples from patients with psychiatric disorders

Science Translational Medicine(2024)10.1126/scitranslmed.adh9974

Top 27%

0.733DataRank

Top 27%22 citations

Cuihua Xia, Yi Jiang, Yu Chen, Jiaqi Zhou, Rujia Dai +95 more

Lateral mammillary body neurons in mouse brain are disproportionately vulnerable in Alzheimer’s disease

Science Translational Medicine(2023)10.1126/scitranslmed.abq1019

N/A

0.731DataRank · unranked

24 citations

Zhuyu Peng, Mitchell H. Murdock, Andrea Spitaleri, Hansruedi Mathys, José Dávila-Velderrain +10 more

Single-cell deconvolution of 3,000 post-mortem brain samples for eQTL and GWAS dissection in mental disorders

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.21.426000

N/A

0.693DataRank · unranked

15 citations

Liang He, Jose Davila-Velderrain, Lei Hou, Shahin Mohammadi, Hansruedi Mathys +6 more

A probabilistic framework to dissect functional cell-type-specific regulatory elements and risk loci underlying the genetics of complex traits

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/059345

N/A

0.473DataRank · unranked

8 citations

Jose Davila-Velderrain, Sharon L. R. Kardia, José Dávila-Velderrain, Yue Li

Neurons burdened by DNA double strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.23.474002

N/A

0.462DataRank · unranked

8 citations

Carles B. Adsera, Eloi Schmauch, José Dávila-Velderrain, Matheus B. Victor, Vishnu Dileep +9 more

A multiresolution framework to characterize single-cell state landscapes

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/746339

N/A

0.453DataRank · unranked

8 citations

Jose Davila-Velderrain, Sharon L. R. Kardia, José Dávila-Velderrain, Shahin Mohammadi

Author Correction: APOE4 impairs myelination via cholesterol dysregulation in oligodendrocytes

Nature(2024)10.1038/s41586-024-08434-5

N/A

0.394DataRank · unranked

7 citations

Leyla Anne Akay, José Dávila-Velderrain, Djuna von Maydell, Hansruedi Mathys, Shawn M. Davidson +26 more

Author Correction: Reconstruction of the human blood–brain barrier in vitro reveals a pathogenic mechanism of APOE4 in pericytes

Nature Medicine(2021)10.1038/s41591-021-01250-8

N/A

0.372DataRank · unranked

5 citations

Michael Bula, Jose Davila-Velderrain, Leyla Anne Akay, Lena Zhu, Alexander Frank +11 more

Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorization

Nucleic Acids Research(2019)10.1093/nar/gkz538

N/A

0.314DataRank · unranked

5 citations

Jose Davila-Velderrain, Zhizhuo Zhang, Sharon L. R. Kardia, José Dávila-Velderrain, Dianbo Liu

GENCODE: Creating a Validated Manually Annotated Geneset for the Whole Human Genome

Nature Precedings(2009)10.1038/npre.2009.3155.1

Top 71%

0.128DataRank

Top 71%1 citations

Giulio Formenti, Rizi Ai, Nicholas J. Dickens, Genome Institute at Washington University, Michael Tress +45 more

Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorization

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/217588

N/A

0.104DataRank · unranked

1 citations

Jose Davila-Velderrain, Zhizhuo Zhang, Sharon L. R. Kardia, José Dávila-Velderrain, Dianbo Liu

Cell-type specific vulnerability in a subcortical limbic circuit node in Alzheimer's disease

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.7783650

N/A

0DataRank · unranked

0 citations

P Zhuyu, MH Murdock, Lijin Liu, H Maths, José Dávila-Velderrain +8 more

Systematic investigation of allelic regulatory activity of schizophrenia-associated common variants

Cell Genomics(2023)10.1016/j.xgen.2023.100404

N/A

0DataRank · unranked

47 citations

Sool Lee, Jiseok Lee, Jessica Bell, Oleh Krupa, Jessica E. Davis +12 more

José Dávila-Velderrain

Indexed papers

Top data-sharing exemplar

Papers