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Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorization

Nucleic Acids Research(2019)10.1093/nar/gkz538Source: DataRank Database

Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorization is a research paper published in Nucleic Acids Research (2019). On theSindex it has a DataRank of 0.314. It has been cited 5 times, with 3 citing works in its 1-hop citation network.

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0.314DataRank · unranked

Scored on demand from live citation data

Open Access5 citations · 3 citing works in its network

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (18 grants)OA: goldTopics (46)IDs (PubMed, PMC)Annotations (2)SDGs (2)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 86%Citation Network 14%

Base Score Contribution

0.269

From this paper's citation signal

Citation Network Contribution

0.0450

From 2 citing papers with measurable signal

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Authors (5)

Jose Davila-Velderrain,Zhizhuo Zhang ORCID,Sharon L. R. Kardia ORCID,José Dávila-Velderrain ORCID,Dianbo Liu ORCID

Live enrichment

PubMed:31265076 PMC:PMC6698807

NIH

Grant: U01NS110453

NIH

Grant: R01AG062335

NIH

Grant: R01AG058002

NIH

Grant: R01MH109978

NIH

Grant: R01HG008155

NIH

Grant: RF1AG054012

NIH

Grant: RF1AG062377

NIH

Grant: U01MH119509

NHGRI NIH HHS

Grant: U01 HG009088

National Institutes of Health

Grant: 5R01AG058002-05

Epigenomic, transcriptional and cellular dissection of Alzheimer's variants

National Institutes of Health

Grant: 1RF1AG062377-01

Dissection of endosomal trafficking mechanisms in Alzheimer's Disease

National Institutes of Health

Grant: 7R01MH109978-03

Network-based prediction and validation of causal schizophrenia genes and variants

National Institutes of Health

Grant: 1U01MH119509-01

Single Cell Transcriptional and Epigenomic Dissection of Schizophrenia and Bipoloar Disease

National Institutes of Health

Grant: 5R01AG062335-05

Elucidating the Molecular Mechanisms of Neuropsychiatric Symptoms in Alzheimer's Disease

National Institutes of Health

Grant: 7R01HG008155-04

Interpreting non-coding variants using epigenomics, regulatory models, & validation experiments

National Institutes of Health

Grant: 1R01AG062335-01

Elucidating the Molecular Mechanisms of Neuropsychiatric Symptoms in Alzheimer's Disease

National Institutes of Health

Grant: 1RF1AG054012-01

Cell type specific epigenetic analysis to understand complex mechanisms underlying Alzheimer's disease phenotypes

National Institutes of Health

Grant: 1U01NS110453-01

Single-cell transcriptional and epigenomic dissection of Alzheimer's Disease and Related Dementias

goldLicense: cc-by

publisherhttps://watermark.silverchair.com/gkz538.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAp8wggKbBgkqhkiG9w0BBwagggKMMIICiAIBADCCAoEGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMtXRvdlCQGKUSgagaAgEQgIICUisX7mndI1v4XsVjXrf0D9JG4DzBM-YTPNuVrkLgsJ1v3P3Gi8emzWLYAdBZZ4L3lQIybEuH6EnotmxFyJa_Nv4kEdb4fk8puc9cHvD4-FJa-yLfxgmNWTdaZeJvHo6WKdgPF1ctk4j2QgXWHjhSaaB9NhoC63cLLGz7XQkl8vpIUR7xfJJlSmLiFAGEqgjtEp-F5fMXysExUBAx07WUkVRsUyUn35imjZYAdKIG34IQlaAtBjkp6zmoRMVXnjRChnxR7X0FoyyMFiepb7Nw8QnKB43oMpuP4xIZJX6inv3IWTOpybu-dEOpRhJpH7A12dSdbKjj4lNyo6SIL39wSngFitk64Nd2IZBykFMN7LH1FhH2cQpaAK5WiMpLiXCsqDAdpZzVmMe87oBP4DEzj-jb5Xon32EUlbTM6D8H7snVe5TyhCA22LQqXjyGXOUk1zKacplVEx4KikULrpYQ9y5pFe4iO23HInTm9FwWAlBun50SBMc1yOdQ3hVmadYtJYCC4gS5dH4uCyRak1Q3_HsJiz8aEH3b4hRw-e5C2TKPUeNRUAdHvgNrtFZmOiYWPK0yZIWw4oewAcoZbYUD_XaVUjQptFkJhsIx2bpHx71lr5C7OAimbEds4cLGBzKuB6_TcQIpduyqXsKNMRtzJbBj02fPj4vUG0IJfxa-kschEL0YjyQKuIJh8645MJLkqLOOUuCYQmrOq-uK0jvFN5cgaGN8Y1uR9RZ49UdRCkICVWjabJ9bSPRcKXdiOT4Vv8C6YOoagEis60TyLGU5nHS0kw

publisherhttp://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkz538/28897107/gkz538.pdf

publisherhttp://academic.oup.com/nar/article-pdf/47/14/7235/29185776/gkz538.pdf

repositoryhttps://discovery.dundee.ac.uk/en/publications/3ff8aa51-f76a-4a86-9d6f-67df8fd3377e

repositoryhttp://www.scopus.com/inward/record.url?scp=85071705742&partnerID=8YFLogxK

Fields of Study

0301 basic medicine03 medical and health sciences0303 health sciences

MeSH Terms

K562 CellsChromatinHumansReproducibility of ResultsGene Expression ProfilingProtein Interaction MappingComputational BiologyPolymorphism, Single NucleotideAlgorithmsRegulatory Elements, TranscriptionalGene Regulatory NetworksPromoter Regions, GeneticEpigenomicsGene Ontology

Keywords

Protein Interaction Mapping/methodsEpigenomics/dk/atira/pure/subjectarea/asjc/1300/1311name=GeneticsTranscriptional/genetics610Polymorphism, Single NucleotidePromoter RegionsProtein Interaction MappingHumansGene Regulatory NetworksRegulatory Elements, TranscriptionalPolymorphismPromoter Regions, GeneticGenetic/geneticsChromatin/geneticsGene Expression ProfilingComputational BiologyReproducibility of ResultsEpigenomics/methodsSingle NucleotideComputational Biology/methodsRegulatory ElementsChromatin004Gene OntologyGene Expression Profiling/methodsK562 CellsAlgorithms

Sustainable Development Goals

SDG 10: 10. No inequalitySDG 16: 16. Peace & justice

Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorization

FAIR Checklist

DataRank Breakdown

Authors (5)

Funding (18 grants)

Open Access

Topics

Annotations (Europe PMC)