🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Rafael C. Bernardi

Auburn University

ORCID: 0000-0003-0758-2026
Biochemistry, Genetics and Molecular BiologyPhysics and AstronomyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 8 papers. Top paper: “Generalized correlation-based dynamical network analysis: a new high-performance approach for identifying allosteric communications in molecular dynamics trajectories”.

Generalized correlation-based dynamical network analysis: a new high-performance approach for identifying allosteric communications in molecular dynamics trajectories

The Journal of Chemical Physics(2020)10.1063/5.0018980
N/A
0.770DataRank · unranked
169 citations

Rafael C. Bernardi, César de la Fuente‐Núñez, Zaida Luthey‐Schulten, Marcelo C. R. Melo

Streptavidin/biotin: Tethering geometry defines unbinding mechanics

Science Advances(2020)10.1126/sciadv.aay5999
N/A
0DataRank · unranked
101 citations

Leonard C. Schendel, Hermann E. Gaub, Rafael C. Bernardi, Steffen M. Sedlak

High force catch bond mechanism of bacterial adhesion in the human gut

Nature Communications(2020)10.1038/s41467-020-18063-x
N/A
0DataRank · unranked
69 citations

Haipei Liu, Andrés Manuel Vera, Rafael C. Bernardi, Philip Tinnefeld, Michael A. Nash +1 more

VMD as a Platform for Interactive Small Molecule Preparation and Visualization in Quantum and Classical Simulations

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c00658
N/A
0DataRank · unranked
98 citations

John E. Stone, João V. Ribeiro, Jan Saam, Lydia Freddolino, Rafael C. Bernardi +2 more

Deciphering molecular mechanisms stabilizing the reovirus-binding complex

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2220741120
N/A
0DataRank · unranked
15 citations

Melanie Koehler, Priscila da Silva Figueiredo Celestino Gomes, Joshua D. Simpson, Sydni Caet Smith, Diego E. B. Gomes +8 more

Integrating Dynamic Network Analysis with AI for Enhanced Epitope Prediction in PD-L1:Affibody Interactions

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.08.579577
N/A
0DataRank · unranked
3 citations

Byeongseon Yang, Rosario Vanella, Michael A. Nash, Rafael C. Bernardi, Diego E. B. Gomes

Engineering the Mechanical Stability of a Therapeutic Affibody/PD-L1 Complex by Anchor Point Selection

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.21.595133
N/A
0DataRank · unranked
0 citations

Diego E. B. Gomes, Zhaowei Liu, Mariana Sá Santos, Jiajun Li, Rafael C. Bernardi +2 more

An expanded metabolic pathway for androgen production by commensal bacteria

Nature Microbiology(2025)10.1038/s41564-025-01979-9
N/A
0DataRank · unranked
31 citations

Saeed Ahmad, Angélica Cruz-Lebrón, Sarah E. Ernst, Kelly Yovani Olivos Caicedo, Yoon Jeong +23 more