Ming Hu

Also affiliated with Xinjiang Production and Construction Corps

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.586Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues

Nature Structural & Molecular Biology(2024)10.1038/s41594-024-01431-2

Top 40%

0.482DataRank

Top 40%7 citations

Nathan R. Zemke, Ziyin Chen, Ivan Jurić, Rong Hu, Ramya Raviram +16 more

Papers

Driven by 56 papers — median percentile 41. Top paper: “CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains”.

CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains

Nature Genetics(2021)10.1038/s41588-021-00863-6

N/A

0.798DataRank · unranked

203 citations

Quan Zhu, Adam Jussila, Yuanyuan Han, Bogdan Bintu, Colin Kern +13 more

Cell-type-specific 3D epigenomes in the developing human cortex

Nature(2020)10.1038/s41586-020-2825-4

N/A

0.768DataRank · unranked

166 citations

Mark-Phillip Pebworth, Xiaoyu Yang, Armen Abnousi, Changxu Fan, Jia Wen +18 more

Interpretable deep learning translation of GWAS and multi-omics findings to identify pathobiology and drug repurposing in Alzheimer’s disease

Cell Reports(2022)10.1016/j.celrep.2022.111717

N/A

0.702DataRank · unranked

107 citations

Chengsheng Mao, Yuan Hou, Yuan Luo, Jessica Binder, Yadi Zhou +12 more

SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data

Nature Methods(2021)10.1038/s41592-021-01231-2

N/A

0.688DataRank · unranked

97 citations

Armen Abnousi, Yanxiao Zhang, Guoqiang Li, Lindsay Lee, Ziyin Chen +9 more

Longitudinal Assessment of Ellipsoid Zone Integrity, Subretinal Hyperreflective Material, and Subretinal Pigment Epithelium Disease in Neovascular Age-Related Macular Degeneration

Ophthalmology Retina(2021)10.1016/j.oret.2021.02.012

N/A

0.635DataRank · unranked

68 citations

Robert Zahid, Peter K. Kaiser, Jeffrey S. Heier, David M. Brown, Xiangyi Meng +6 more

Transcriptional network orchestrating regional patterning of cortical progenitors

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2024795118

N/A

0.606DataRank · unranked

56 citations

Kartik Pattabiraman, Rinaldo Catta-Preta, Olga Golonzhka, Susan Lindtner, Ke Tang +15 more

3D Epigenomic Characterization Reveals Insights Into Gene Regulation and Lineage Specification During Corticogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.24.963652

N/A

0.530DataRank · unranked

7 citations

Mark-Phillip Pebworth, Xiaoyu Yang, Armen Abnousi, Changxu Fan, Jia Wen +17 more

Parallel characterization of cis-regulatory elements for multiple genes using CRISPRpath

Science Advances(2021)10.1126/sciadv.abi4360

N/A

0.510DataRank · unranked

29 citations

Mengchi Wang, Bingkun Li, Kirsty Jamieson, Lina Zheng, Ian Jones +16 more

Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues

Nature Structural & Molecular Biology(2024)10.1038/s41594-024-01431-2

Top 40%

0.482DataRank

Top 40%7 citations

Nathan R. Zemke, Ziyin Chen, Ivan Jurić, Rong Hu, Ramya Raviram +16 more

Understanding Regulatory Mechanisms of Brain Function and Disease through 3D Genome Organization

Genes(2022)10.3390/genes13040586

N/A

0.406DataRank · unranked

14 citations

Wujuan Zhong, Jiawen Chen, Bo Huang, Ming Hu, Yun Li +1 more

Quantitative third-harmonic generation imaging of mouse visual cortex areas reveals correlations between functional maps and structural substrates

Biomedical Optics Express(2020)10.1364/boe.396962

N/A

0.385DataRank · unranked

12 citations

Ming Hu, Nhat Minh Le, Hiroki Sugihara, Peter T. C. So, Mriganka Sur +1 more

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

Nature Communications(2023)10.1038/s41467-023-40658-3

N/A

0.360DataRank · unranked

10 citations

Hongyu Yu, Bojing Blair Jia, Adam Jussila, Chenxu Zhu, Jiawen Chen +10 more

Identification of a distal enhancer regulating hedgehog interacting protein gene in human lung epithelial cells

EBioMedicine(2024)10.1016/j.ebiom.2024.105026

N/A

0.360DataRank · unranked

10 citations

Li Zhang, Yuzhen Yu, Lu Gong, Shiyue Tao, Rhiannon B. Werder +17 more

Longitudinal analysis of aqueous humour cytokine expression and OCT-based imaging biomarkers in retinal vein occlusions treated with anti-vascular endothelial growth factor therapy in the IMAGINE study

Eye(2022)10.1038/s41433-022-02265-2

N/A

0.345DataRank · unranked

9 citations

Charles C. Wykoff, Joseph R. Abraham, Leina Lunasco, Hannah J. Yu, Ming Hu +5 more

A systematic evaluation of Hi-C data enhancement methods for enhancing PLAC-seq and HiChIP data

Briefings in Bioinformatics(2022)10.1093/bib/bbac145

N/A

0.269DataRank · unranked

5 citations

Yuchen Yang, Gang Li, Min-Zhi Jiang, Jia Wen, Armen Abnousi +4 more

Transcriptional Network Orchestrating Regional Patterning of Cortical Progenitors

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.03.366914

N/A

0.241DataRank · unranked

4 citations

Kartik Pattabiraman, Rinaldo Catta-Preta, Olga Golonzhka, Susan Lindtner, Ke Tang +15 more

Super interactive promoters provide insight into cell type-specific regulatory networks in blood lineage cell types

PLoS Genetics(2022)10.1371/journal.pgen.1009984

N/A

0.241DataRank · unranked

4 citations

Taylor M. Lagler, Quan Sun, Yuchen Yang, Jiawen Chen, Yuriko Harigaya +6 more

MUNIn: A statistical framework for identifying long-range chromatin interactions from multiple samples

Human Genetics and Genomics Advances(2021)10.1016/j.xhgg.2021.100036

N/A

0.178DataRank · unranked

2 citations

Yuchen Yang, Armen Abnousi, Qian Zhang, Naoki Kubo, Joshua S. Martin Beem +3 more

HPTAD: A computational method to identify topologically associating domains from HiChIP and PLAC-seq datasets

Computational and Structural Biotechnology Journal(2023)10.1016/j.csbj.2023.01.003

N/A

0.165DataRank · unranked

2 citations

Lindsay Lee, Armen Abnousi, Jiawen Chen, Jia Wen, Ming Hu +2 more

SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single cell Hi-C data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.05.502991

N/A

0.165DataRank · unranked

2 citations

Miao Yu, Xiaoqi Li, Chenxu Zhu, Yanxiao Zhang, Hongyu Yu +4 more

SnapFISH-IMPUTE: an imputation method for multiplexed DNA FISH data

Communications Biology(2024)10.1038/s42003-024-06428-7

N/A

0.165DataRank · unranked

2 citations

Daiqing Wu, Shreya Mishra, Guning Shen, Huaigu Sun, Ming Hu +2 more

Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.25.489471

Top 78%

0.104DataRank

Top 78%1 citations

Nathan R. Zemke, Ziyin Chen, Ivan Jurić, Rong Hu, Ramya Raviram +15 more

Parallel Characterization of cis -Regulatory Elements for Multiple Genes Using CRISPRpath

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.19.431931

N/A

0.104DataRank · unranked

1 citations

Mengchi Wang, Bingkun Li, Kirsty Jamieson, Lina Zheng, Ian Jones +16 more

Mapping chromatin loops in single cells

Trends in Genetics(2022)10.1016/j.tig.2022.03.007

N/A

0DataRank · unranked

13 citations

Yun Li, Ming Hu, Miao Yu

A Network-based Deep Learning Framework Catalyzes GWAS and Multi-Omics Findings to Biology and Drug Repurposing for Alzheimer’s Disease

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.20.465087

N/A

0DataRank · unranked

2 citations

Yuan Hou, Yadi Zhou, Ming Hu, Feixiong Cheng, Jielin Xu

TWO-SIGMA-G: a new competitive gene set testing framework for scRNA-seq data accounting for inter-gene and cell–cell correlation

Briefings in Bioinformatics(2022)10.1093/bib/bbac084

N/A

0DataRank · unranked

5 citations

Ming Hu, Liang Cheng, John A. Wrobel, Kirk C. Wilhelmsen, Lishan Su +3 more

HPRep: Quantifying Reproducibility in HiChIP and PLAC-Seq Datasets

Current Issues in Molecular Biology(2021)10.3390/cimb43020082

N/A

0DataRank · unranked

9 citations

Yuchen Yang, Armen Abnousi, Jiawen Chen, Michael Song, Ian Jones +4 more

Characterization of Ultra-Widefield Angiographic Vascular Features in Diabetic Retinopathy with Automated Severity Classification

Ophthalmology Science(2021)10.1016/j.xops.2021.100049

N/A

0DataRank · unranked

10 citations

Sunil K. Srivastava, Jon Whitney, Margaret O’Connell, Sudeshna Sil Kar, Ming Hu +4 more

SnapHiC-G: identifying long-range enhancer-promoter interactions from single-cell Hi-C data via a global background model.

UNC Libraries(2025)10.17615/1fmk-1f23

N/A

0DataRank · unranked

0 citations

Paola Giusti‐Rodríguez, Geoffery W. Wang, Weifang Liu, Ming Hu, Wujuan Zhong +3 more

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.16.520793

N/A

0DataRank · unranked

0 citations

Hongyu Yu, Bojing Blair Jia, Adam Jussila, Chenxu Zhu, Jiawen Chen +8 more

Enhancer-instructed epigenetic landscape and chromatin compartmentalization dictate a primary antibody repertoire protective against specific bacterial pathogens

Nature Immunology(2023)10.1038/s41590-022-01402-z

N/A

0DataRank · unranked

28 citations

Lindsay Lee, Hanbin Lu, J. Andrés Valderrama, Elisabet Bjånes, Victor Nizet +4 more

SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single-cell Hi-C data

Briefings in Bioinformatics(2023)10.1093/bib/bbad315

N/A

0DataRank · unranked

10 citations

Miao Yu, Xiaoqi Li, Chenxu Zhu, Yanxiao Zhang, Hongyu Yu +6 more

HiC-ACT: improved detection of chromatin interactions from Hi-C data via aggregated Cauchy test

The American Journal of Human Genetics(2021)10.1016/j.ajhg.2021.01.009

N/A

0DataRank · unranked

26 citations

Armen Abnousi, Ming Hu, Yuchen Yang, Yun Li, Taylor M. Lagler

CTCF Promotes Long-range Enhancer-promoter Interactions and Lineage-specific Gene Expression in Mammalian Cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.21.001693

N/A

0DataRank · unranked

14 citations

Haruhiko Ishii, Xiong Xiong, Simona Bianco, Franz Meitinger, Rong Hu +11 more

Combinatorial transcription factor binding encodes cis-regulatory wiring of forebrain GABAergic neurogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.28.546894

N/A

0DataRank · unranked

3 citations

Susan Lindtner, Athéna R. Ypsilanti, James D. Price, Armen Abnousi, Linda Su-Feher +12 more

SnapHiC-G: identifying long-range enhancer-promoter interactions from single-cell Hi-C data via a global background model

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.01.530686

N/A

0DataRank · unranked

0 citations

Wujuan Zhong, Paola Giusti‐Rodríguez, Geoffery W. Wang, Ming Hu, Yun Li +1 more

Small-molecule-induced epigenetic rejuvenation promotes SREBP condensation and overcomes barriers to CNS myelin regeneration

Cell(2024)10.1016/j.cell.2024.04.005

N/A

0DataRank · unranked

62 citations

Dazhuan Xin, Xiaowen Zhong, Chuntao Zhao, Zhidan Li, Liguo Zhang +29 more

Droplet Hi-C enables scalable, single-cell profiling of chromatin architecture in heterogeneous tissues

Nature Biotechnology(2024)10.1038/s41587-024-02447-1

N/A

0DataRank · unranked

55 citations

Yang Xie, Brett M. Taylor, Zhaoning Wang, Jiachen Sun, Ethan J. Armand +13 more

Nuclear morphology is shaped by loop-extrusion programs

Nature(2024)10.1038/s41586-024-07086-9

N/A

0DataRank · unranked

31 citations

Maryam Zand, Lindsay Lee, Shreya Mishra, Alexandra Bortnick, Hanbin Lu +9 more

Ellipsoid Zone Integrity and Visual Function in Dry Age-Related Macular Degeneration

Journal of Personalized Medicine(2024)10.3390/jpm14050543

N/A

0DataRank · unranked

31 citations

Yavuz Cakir, Gagan Kalra, Hasan Cetin, Ming Hu, Joseph R. Abraham +4 more

Aqueous Cytokine Expression and Higher Order OCT Biomarkers: Assessment of the Anatomic-Biologic Bridge in the IMAGINE DME Study

American Journal of Ophthalmology(2020)10.1016/j.ajo.2020.08.047

N/A

0DataRank · unranked

35 citations

Charles C. Wykoff, Sruthi Arepalli, Leina Lunasco, Hannah J. Yu, Ming Hu +5 more

Global analysis of histone modifications and long-range chromatin interactions revealed the differential cistrome changes and novel transcriptional players in human dilated cardiomyopathy

Journal of Molecular and Cellular Cardiology(2020)10.1016/j.yjmcc.2020.06.001

N/A

0DataRank · unranked

21 citations

Armen Abnousi, Peter Bazeley, Ying Ni, Michael P. Morley, Christine S. Moravec +3 more

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

UNC Libraries(2025)10.17615/vmcs-0c51

N/A

0DataRank · unranked

0 citations

Caterina Strambio‐De‐Castillia, Lindsay Lee, Shreya Mishra, Bing Ren, Alistair N. Boettiger +10 more

SnapHiC-G: identifying long-range enhancer–promoter interactions from single-cell Hi-C data via a global background model

Briefings in Bioinformatics(2024)10.1093/bib/bbae426

N/A

0DataRank · unranked

2 citations

Wujuan Zhong, Paola Giusti‐Rodríguez, Zhiyun Jiang, Geoffery W. Wang, Huaigu Sun +3 more

Constructing polymorphonuclear cells: chromatin folding shapes nuclear morphology

Trends in Immunology(2024)10.1016/j.it.2024.09.012

N/A

0DataRank · unranked

1 citations

Indumathi Patta, Shreya Mishra, Ming Hu, Cornelis Murre

SnapFISH-IMPUTE: an imputation method for multiplexed DNA FISH data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.12.575427

N/A

0DataRank · unranked

0 citations

Daiqing Wu, Guning Shen, Ming Hu, Yun Li, Hongyu Yu

SnapFISH-IMPUTE: an imputation method for multiplexed DNA FISH data

UNC Libraries(2024)10.17615/78zt-nv17

N/A

0DataRank · unranked

0 citations

Hongyu Yu, Daiqing Wu, Huaigu Sun, Shreya Mishra, Guning Shen +2 more

Comparative characterization of human accelerated regions in neurons

Nature(2025)10.1038/s41586-025-08622-x

N/A

0DataRank · unranked

22 citations

Han Yang, Charles Q. Cai, Cooper Beaman, Xiaoyu Yang, Hongjiang Liu +14 more

Longitudinal Ellipsoid Zone Dynamics During Hydroxychloroquine Use

Journal of Personalized Medicine(2025)10.3390/jpm15090416

N/A

0DataRank · unranked

2 citations

Katherine E. Talcott, Obinna Ugwuegbu, Ming Hu, Sunil K. Srivastava, Jamie Reese +2 more

Author Correction: Droplet Hi-C enables scalable, single-cell profiling of chromatin architecture in heterogeneous tissues

Nature Biotechnology(2025)10.1038/s41587-025-02697-7

N/A

0DataRank · unranked

3 citations

Yang Xie, Brett M. Taylor, Zhaoning Wang, Jiachen Sun, Ethan J. Armand +13 more

HPTAD: A computational method to identify topologically associating domains from HiChIP and PLAC-seq datasets

UNC Libraries(2025)10.17615/3wf1-gk25

N/A

0DataRank · unranked

0 citations

Jia Wen, Yun Li, Armen Abnousi, Ming Hu, Jonathan D. Rosen +2 more

SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single-cell Hi-C data

UNC Libraries(2025)10.17615/0hcp-4r09

N/A

0DataRank · unranked

0 citations

Ziyin Chen, Shreya Mishra, Hongyu Yu, Xiaoqi Li, Miao Yu +6 more

Understanding the function of regulatory DNA interactions in the interpretation of non-coding GWAS variants

Frontiers in Cell and Developmental Biology(2022)10.3389/fcell.2022.957292

N/A

0DataRank · unranked

23 citations

Weifang Liu, Jiawen Chen, Quan Sun, Ming Hu, Yun Li +1 more

Machine Learning–Based Automated Detection of Hydroxychloroquine Toxicity and Prediction of Future Toxicity Using Higher-Order OCT Biomarkers

Ophthalmology Retina(2022)10.1016/j.oret.2022.05.031

N/A

0DataRank · unranked

21 citations

Katherine E. Talcott, Stephanie Kaiser, Obinna Ugwuegbu, Ming Hu, Sunil K. Srivastava +2 more

SnapHiC2: A computationally efficient loop caller for single cell Hi-C data

Computational and Structural Biotechnology Journal(2022)10.1016/j.csbj.2022.05.046

N/A

0DataRank · unranked

22 citations

Lindsay Lee, Armen Abnousi, Miao Yu, Weifang Liu, Le Huang +3 more

THUNDER: A reference-free deconvolution method to infer cell type proportions from bulk Hi-C data

PLoS Genetics(2022)10.1371/journal.pgen.1010102

N/A

0DataRank · unranked

14 citations

Ruth Huh, Zoey Hou, Cheynna Crowley, Jia Wen, Yin Shen +5 more

Ming Hu

Indexed papers

Top data-sharing exemplar

Papers