Juan R. Perilla

Immunology and MicrobiologyBiochemistry, Genetics and Molecular BiologyMedicineEnvironmental ScienceMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 42 papers. Top paper: “Elasticity of the HIV-1 core facilitates nuclear entry and infection”.

Elasticity of the HIV-1 core facilitates nuclear entry and infection

PLoS Pathogens(2024)10.1371/journal.ppat.1012537

N/A

0.827DataRank · unranked

38 citations

Alexander J. Bryer, Jonathan R. Andino-Moncada, Jiong Shi, Jun Hong, Cameron Torres +6 more

Recognition of the TDP-43 nuclear localization signal by importin α1/β

Cell Reports(2022)10.1016/j.celrep.2022.111007

N/A

0.628DataRank · unranked

65 citations

Hamed Meshkin, Alexander J. Bryer, Fenglin Li, Ying‐Hui Ko, Ravi K. Lokareddy +5 more

Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly

PLoS Pathogens(2020)10.1371/journal.ppat.1008277

N/A

0.606DataRank · unranked

56 citations

Chaoyi Xu, Dustin R. Morado, Vladyslav Kravchuk, Clifton Ricana, Terri D. Lyddon +8 more

Performance efficient macromolecular mechanics via sub-nanometer shape based coarse graining

Nature Communications(2023)10.1038/s41467-023-37801-5

N/A

0.416DataRank · unranked

15 citations

Juan S. Rey, Juan R. Perilla, Alexander J. Bryer

Structural maturation of the matrix lattice is not required for HIV-1 particle infectivity

Science Advances(2025)10.1126/sciadv.adv4356

N/A

0.312DataRank · unranked

6 citations

Yuta Hikichi, Juan S. Rey, Caner Akıl, Yanan Zhu, Hana Veler +5 more

Cyclophilin a Stabilizes the Mature HIV-1 Capsid through a Novel Non-Canonical Binding Site

Biophysical Journal(2015)10.1016/j.bpj.2014.11.1051

N/A

0.104DataRank · unranked

1 citations

Chuang Liu, Juan R. Perilla, In-Ja Byeon, Jiying Ning, Jinwoo Ahn +5 more

Structural Basis of HIV-1 Maturation Inhibitor Binding and Activity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.22.481470

N/A

0.104DataRank · unranked

1 citations

Kaneil K. Zadrozny, Roman Zadorozhnyi, Ryan W. Russell, Caitlin M. Quinn, Alex B. Kleinpeter +9 more

Scalable Analysis of Authentic Viral Envelopes on FRONTERA

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.05.188367

N/A

0DataRank · unranked

0 citations

Tyler Reddy, John E. Stone, Jodi A. Hadden‐Perilla, Juan R. Perilla, Fabio González-Arias

Curvature of the retroviral capsid assembly is modulated by a molecular switch

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.26.424437

N/A

0DataRank · unranked

0 citations

Alexander J. Bryer, Xin Qiao, Jaekyun Jeon, Ryan Weed, Kaylie Janicki +7 more

10.1063/5.0021491.1

Default Digital Object Group(2020)10.1063/5.0021491.1

N/A

0DataRank · unranked

0 citations

Nidhi Katyal, Tanya Nesterova, Juan R. Perilla, Chaoyi Xu

Structure of native HIV-1 cores and their interactions with IP6 and CypA

Science Advances(2021)10.1126/sciadv.abj5715

N/A

0DataRank · unranked

72 citations

Yanan Zhu, Zhengyi Yang, Chaoyi Xu, Yuriy Chaban, Tanya Nesterova +8 more

Molecular dynamics of the viral life cycle: progress and prospects

Current Opinion in Virology(2021)10.1016/j.coviro.2021.08.003

N/A

0DataRank · unranked

42 citations

Carolina Pérez-Segura, Alexander J. Bryer, Juan R. Perilla, Jodi A. Hadden‐Perilla, Peter Eugene Jones

Integrative structural biology of HIV-1 capsid protein assemblies: combining experiment and computation

Current Opinion in Virology(2021)10.1016/j.coviro.2021.03.005

N/A

0DataRank · unranked

17 citations

Jodi A. Hadden‐Perilla, Angela M. Gronenborn, Tatyana Polenova, Juan R. Perilla

Curvature of the Retroviral Capsid Assembly Is Modulated by a Molecular Switch

The Journal of Physical Chemistry Letters(2021)10.1021/acs.jpclett.1c01769

N/A

0DataRank · unranked

10 citations

Alexander J. Bryer, Xin Qiao, Jaekyun Jeon, Ryan Weed, Kaylie Janicki +7 more

Full scale structural, mechanical and dynamical properties of HIV-1 liposomes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.24.436841

N/A

0DataRank · unranked

1 citations

Tyler Reddy, Edward Lyman, Juan R. Perilla, Alexander J. Bryer

HIV-1 Mutants that Escape the Cytotoxic T-Lymphocytes are Defective in Viral DNA Integration

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.29.458043

N/A

0DataRank · unranked

0 citations

Santosh Thapa, Benem-Orom Davids, Alex Bryer, Chaoyi Xu, Jiong Shi +5 more

Permeability of the HIV-1 capsid to metabolites modulates viral DNA synthesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.30.071217

N/A

0DataRank · unranked

14 citations

D Fischer, Sanela Rankovic, Wen Li, Rob Dick, Brent Runge +9 more

HIV-1 mutants that escape the cytotoxic T-lymphocytes are defective in viral DNA integration

PNAS Nexus(2022)10.1093/pnasnexus/pgac064

N/A

0DataRank · unranked

14 citations

Benem-Orom Davids, Alex Bryer, Chaoyi Xu, Santosh Thapa, Jiong Shi +5 more

Magic angle spinning NMR structure of human cofilin-2 assembled on actin filaments reveals isoform-specific conformation and binding mode

Nature Communications(2022)10.1038/s41467-022-29595-9

N/A

0DataRank · unranked

15 citations

Ryan W. Russell, Elena Kudryashova, Chaoyi Xu, Nidhi Katyal, Juan R. Perilla +3 more

Full scale structural, mechanical and dynamical properties of HIV-1 liposomes

PLoS Computational Biology(2022)10.1371/journal.pcbi.1009781

N/A

0DataRank · unranked

15 citations

Tyler Reddy, Edward Lyman, Juan R. Perilla, Alexander J. Bryer

Performance efficient macromolecular mechanics via sub-nanometer shape based coarse graining

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.28.505590

N/A

0DataRank · unranked

3 citations

Juan R. Perilla, Alexander J. Bryer

Atomic-resolution structure of HIV-1 capsid tubes by magic-angle spinning NMR

Nature Structural & Molecular Biology(2020)10.1038/s41594-020-0489-2

N/A

0DataRank · unranked

80 citations

Ryan W. Russell, Alexander J. Bryer, Caitlin M. Quinn, Guangjin Hou, Huilan Zhang +5 more

Equilibrium dynamics of the pre- and post-cleavage regions of SP1 are separately shifted by the HIV-1 maturation inhibitor Bevirimat

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.05.479246

N/A

0DataRank · unranked

0 citations

Juan R. Perilla, Chaoyi Xu

The capsid lattice engages a bipartite NUP153 motif to mediate nuclear entry of HIV-1 cores

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2202815120

N/A

0DataRank · unranked

46 citations

Sushila Kumari, Chaoyi Xu, Sooin Jang, Jiong Shi, Ryan C. Burdick +18 more

Structural basis of HIV-1 maturation inhibitor binding and activity

Nature Communications(2023)10.1038/s41467-023-36569-y

N/A

0DataRank · unranked

30 citations

Kaneil K. Zadrozny, Roman Zadorozhnyi, Ryan W. Russell, Caitlin M. Quinn, Alex B. Kleinpeter +9 more

Multidisciplinary studies with mutated HIV-1 capsid proteins reveal structural mechanisms of lattice stabilization

Nature Communications(2023)10.1038/s41467-023-41197-7

N/A

0DataRank · unranked

20 citations

Karen A. Kirby, William M. McFadden, Haijuan Du, Dandan Liu, Chaoyi Xu +10 more

The Drug-Induced Interface That Drives HIV-1 Integrase Hypermultimerization and Loss of Function

mBio(2023)10.1128/mbio.03560-22

N/A

0DataRank · unranked

18 citations

Tung Dinh, Lev Levintov, Arun S. Annamalai, Juan S. Rey, Lorenzo Briganti +10 more

Molecular determinants of Ebola nucleocapsid stability from molecular dynamics simulations

The Journal of Chemical Physics(2020)10.1063/5.0021491

N/A

0DataRank · unranked

10 citations

Nidhi Katyal, Tanya Nesterova, Juan R. Perilla, Chaoyi Xu

Molecular architecture and conservation of an immature human endogenous retrovirus

Nature Communications(2023)10.1038/s41467-023-40786-w

N/A

0DataRank · unranked

14 citations

Hsuan-Fu Liu, Ye Zhou, Juan S. Rey, Lev Levintov, Juan Shen +5 more

Elasticity of the HIV-1 Core Facilitates Nuclear Entry and Infection

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.29.560083

N/A

0DataRank · unranked

6 citations

Alexander J. Bryer, Jonathan Andino, Jiong Shi, Jun Hong, Cameron Torres +6 more

Molecular architecture and conservation of an immature human endogenous retrovirus

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.07.544027

N/A

0DataRank · unranked

3 citations

Hsuan-Fu Liu, Ye Zhou, Juan S. Rey, Lev Levintov, Juan Shen +5 more

Scalable Analysis of Authentic Viral Envelopes on FRONTERA

Computing in Science & Engineering(2020)10.1109/mcse.2020.3020508

N/A

0DataRank · unranked

14 citations

Tyler Reddy, John E. Stone, Jodi A. Hadden‐Perilla, Juan R. Perilla, Fabio González-Arias

The structural and mechanistic bases for the viral resistance to allosteric HIV-1 integrase inhibitor pirmitegravir

mBio(2024)10.1128/mbio.00465-24

N/A

0DataRank · unranked

10 citations

Zahira Tber, Juan S. Rey, Seema Mengshetti, Arun S. Annamalai, Reed Haney +10 more

Structural insights into inhibitor mechanisms on immature HIV-1 Gag lattice revealed by high-resolution in situ single-particle cryo-EM

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.09.617473

N/A

0DataRank · unranked

5 citations

Megan E. Meuser, Juan S. Rey, Hamed Meshkin, Rachel Yang, Swapnil C. Devarkar +6 more

The structural and mechanistic bases for the viral resistance to allosteric HIV-1 integrase inhibitor pirmitegravir

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.26.577387

N/A

0DataRank · unranked

1 citations

Zahira Tber, Juan S. Rey, Seema Mengshetti, Arun S. Annamalai, Reed Haney +10 more

Atomistic simulations of intact virus capsids: A computational challenge worth the scientific payoff

Current Opinion in Structural Biology(2025)10.1016/j.sbi.2025.103082

N/A

0DataRank · unranked

9 citations

Juan R. Perilla, Jodi A. Hadden‐Perilla, Carolina Pérez-Segura

Distinct Target Site of Lenacapavir in Immature HIV-1 and Concurrent Binding with the Maturation Inhibitor Bevirimat

Journal of the American Chemical Society(2025)10.1021/jacs.5c13735

N/A

0DataRank · unranked

6 citations

Megan E. Meuser, Juan S. Rey, Hamed Meshkin, Rachel Yang, Swapnil C. Devarkar +6 more

In-cell structure and variability of pyrenoid Rubisco

Nature Communications(2025)10.1038/s41467-025-62998-y

N/A

0DataRank · unranked

7 citations

Zhen Hou, Maud Dumoux, Alireza Ramezani, Juan R. Perilla, Peijun Zhang +1 more

Permeability of the HIV-1 capsid to metabolites modulates viral DNA synthesis

PLoS Biology(2020)10.1371/journal.pbio.3001015

N/A

0DataRank · unranked

72 citations

D Fischer, Sanela Rankovic, Wen Li, Robert A. Dick, Brent Runge +9 more

Structural basis for HIV-1 capsid adaption to a deficiency in IP6 packaging

Nature Communications(2025)10.1038/s41467-025-63363-9

N/A

0DataRank · unranked

3 citations

Alex B. Kleinpeter, Juan S. Rey, Juan Shen, Y. Shen, Jialu Xu +7 more

High-resolution analysis of the human T-cell leukemia virus capsid protein reveals insights into immature particle morphology

Nature Communications(2025)10.1038/s41467-025-67129-1

N/A

0DataRank · unranked

0 citations

Alireza Ramezani, Nathaniel Talledge, Guichuan Yu, Huixin Yang, Bo Chen +4 more

A DNA-origami nuclear pore mimic reveals nuclear entry mechanisms of HIV-1 capsid

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.10.245522

N/A

0DataRank · unranked

6 citations

Chaoyi Xu, Sooin Jang, Qiancheng Xiong, Swapnil C. Devarkar, Taoran Tian +13 more