William J. Greenleaf

Chan Zuckerberg Initiative (United States)

Also affiliated with Stanford Medicine, Stanford University

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

4.5Author DataRank

Indexed papers

9in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 9 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

An encyclopedia of enhancer-gene regulatory interactions in the human genome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.09.563812

Top 11%

1.9DataRank

Top 11%120 citations

Kristy S. Mualim, Alireza Karbalayghareh, Maya U. Sheth, Kushal K. Dey, Evelyn Jagoda +41 more

Papers

Driven by 93 papers — median percentile 73. Top paper: “Single-cell analyses define a continuum of cell state and composition changes in the malignant transformation of polyps to colorectal cancer”.

Single-cell analyses define a continuum of cell state and composition changes in the malignant transformation of polyps to colorectal cancer

Nature Genetics(2022)10.1038/s41588-022-01088-x

N/A

7.5DataRank · unranked

331 citations

Stephanie Nevins, Derek C. Chen, Roxanne Chiu, Aaron M. Horning, Tuhin K. Guha +13 more

High-throughput single-cell chromatin accessibility CRISPR screens enable unbiased identification of regulatory networks in cancer

Nature Communications(2021)10.1038/s41467-021-23213-w

N/A

3.9DataRank · unranked

151 citations

Jeffrey M. Granja, William J. Greenleaf, Sarah E. Pierce

Beyond the exome: What’s next in diagnostic testing for Mendelian conditions

The American Journal of Human Genetics(2023)10.1016/j.ajhg.2023.06.009

N/A

2.2DataRank · unranked

123 citations

Chloe Reuter, Shruti Marwaha, Medhat Mahmoud, Michael Duyzend, Hayk Barseghyan +91 more

An encyclopedia of enhancer-gene regulatory interactions in the human genome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.09.563812

Top 11%

1.9DataRank

Top 11%120 citations

Kristy S. Mualim, Alireza Karbalayghareh, Maya U. Sheth, Kushal K. Dey, Evelyn Jagoda +41 more

Dynamic chromatin regulatory landscape of human CAR T cell exhaustion

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2104758118

N/A

1.9DataRank · unranked

67 citations

Rachel C. Lynn, Jeff M. Granja, Evan Weber, Maxwell R. Mumbach, Yang Zhao +8 more

Transcription-dependent domain-scale three-dimensional genome organization in the dinoflagellate Breviolum minutum

Nature Genetics(2021)10.1038/s41588-021-00848-5

N/A

1.7DataRank · unranked

68 citations

Alexandro E. Trevino, T. Xiang, Anshul Kundaje, Arthur Grossman, William J. Greenleaf +1 more

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

Nature Methods(2013)10.1038/nmeth.2688

N/A

1.3DataRank · unranked

6962 citations

Jeff Goldy, Lisa C. Zaba, Howard Y. Chang, William J. Greenleaf, Jason D. Buenrostro

Increased ACTL6A occupancy within mSWI/SNF chromatin remodelers drives human squamous cell carcinoma

Molecular Cell(2021)10.1016/j.molcel.2021.10.005

N/A

1.3DataRank · unranked

41 citations

Zohar Shipony, Sherry Lin, Ann Kuo, Xiaochen Xiong, Kyle M. Loh +3 more

Massively parallel characterization of regulatory elements in the developing human cortex

Science(2024)10.1126/science.adh0559

N/A

1.2DataRank · unranked

61 citations

Sean Whalen, Marilyn Steyert, Ryan Ziffra, Pawel F. Przytycki, Fumitaka Inoue +197 more

Systematic benchmarking of single-cell ATAC-sequencing protocols

Nature Biotechnology(2023)10.1038/s41587-023-01881-x

N/A

1.1DataRank · unranked

52 citations

Gert Hulselmans, Christopher Flerin, Paula Soler-Vila, Albert Rafels, Valerie Christiaens +42 more

ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis

Nature Genetics(2021)10.1038/s41588-021-00790-6

N/A

1.1DataRank · unranked

1484 citations

M. Ryan Corces, Sarah E. Pierce, S. Tansu Bagdatli, Hani Choudhry, Howard Y. Chang +2 more

Multicenter integrated analysis of noncoding CRISPRi screens

Nature Methods(2024)10.1038/s41592-024-02216-7

Top 20%

1.0DataRank

Top 20%54 citations

Josh Tycko, Jin Woo Oh, Lexi R. Bounds, Sager J. Gosai, Lazaros Lataniotis +29 more

Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer’s and Parkinson’s diseases

Nature Genetics(2020)10.1038/s41588-020-00721-x

N/A

0.895DataRank · unranked

388 citations

Anna Shcherbina, Soumya Kundu, Michael J. Gloudemans, Laure Frésard, Jeffrey M. Granja +13 more

PD-1 combination therapy with IL-2 modifies CD8+ T cell exhaustion program

Nature(2022)10.1038/s41586-022-05257-0

N/A

0.868DataRank · unranked

326 citations

Koichi Araki, Maria A. Cardenas, Peng Li, Rohit R. Jadhav, Haydn Kissick +26 more

Chromatin accessibility dynamics in a model of human forebrain development

Science(2020)10.1126/science.aay1645

N/A

0.843DataRank · unranked

274 citations

Nicholas A. Sinnott-Armstrong, Jimena Andersen, Se‐Jin Yoon, Nina Huber, Jonathan K. Pritchard +4 more

Chromatin accessibility profiling methods

Nature Reviews Methods Primers(2021)10.1038/s43586-020-00008-9

N/A

0.814DataRank · unranked

227 citations

Georgi K. Marinov, Thomas Krausgruber, Lixia Pan, Alexandre P. Marand, Stefano Secchia +7 more

Single-molecule states link transcription factor binding to gene expression

Nature(2024)10.1038/s41586-024-08219-w

N/A

0.795DataRank · unranked

33 citations

Michaela M. Hinks, Julia M. Schaepe, Georgi K. Marinov, Abby R. Thurm, Carolina Rios-Martinez +7 more

p53 is a central regulator driving neurodegeneration caused by C9orf72 poly(PR)

Cell(2021)10.1016/j.cell.2020.12.025

N/A

0.774DataRank · unranked

173 citations

Zohar Shipony, Rodrigo Lopez-Gonzalez, Lisa Nakayama, Yong‐Jie Zhang, Julien Couthouis +22 more

Cross-ancestry atlas of gene, isoform, and splicing regulation in the developing human brain

Science(2024)10.1126/science.adh0829

Top 26%

0.765DataRank

Top 26%50 citations

Michael Margolis, Rujia Dai, Pan Zhang, Pawel F. Przytycki, Daniel Vo +95 more

Transcriptomic sex differences in postmortem brain samples from patients with psychiatric disorders

Science Translational Medicine(2024)10.1126/scitranslmed.adh9974

Top 27%

0.733DataRank

Top 27%22 citations

Cuihua Xia, Yi Jiang, Yu Chen, Jiaqi Zhou, Rujia Dai +95 more

Targeted profiling of human extrachromosomal DNA by CRISPR-CATCH

Nature Genetics(2022)10.1038/s41588-022-01190-0

N/A

0.725DataRank · unranked

125 citations

Jens Luebeck, Siavash R. Dehkordi, Caterina I. Colón, Rui Li, Ivy Tsz-Lo Wong +21 more

Integrative single-cell analysis of cardiogenesis identifies developmental trajectories and non-coding mutations in congenital heart disease

Cell(2022)10.1016/j.cell.2022.11.028

N/A

0.702DataRank · unranked

107 citations

Laksshman Sundaram, Mengcheng Shen, Abhimanyu Banerjee, Soumya Kundu, Surag Nair +15 more

Integration of spatial and single-cell data across modalities with weakly linked features

Nature Biotechnology(2023)10.1038/s41587-023-01935-0

N/A

0.698DataRank · unranked

104 citations

Bokai Zhu, Sijia Huang, John W. Hickey, Kevin Lin, Michael P. Snyder +5 more

Systematic discovery and perturbation of regulatory genes in human T cells reveals the architecture of immune networks

Nature Genetics(2022)10.1038/s41588-022-01106-y

N/A

0.673DataRank · unranked

88 citations

Oren Shaked, Sahin Naqvi, Nicholas A. Sinnott-Armstrong, Arwa S. Kathiria, Christian M. Garrido +6 more

High Resolution Single Cell Maps Reveals Distinct Cell Organization and Function Across Different Regions of the Human Intestine

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.25.469203

N/A

0.671DataRank · unranked

17 citations

Winston R. Becker, Stephanie Nevins, Aaron M. Horning, Almudena Espín Pérez, Roxanne Chiu +20 more

ArchR: An integrative and scalable software package for single-cell chromatin accessibility analysis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.28.066498

N/A

0.648DataRank · unranked

74 citations

M. Ryan Corces, Sarah E. Pierce, S. Tansu Bagdatli, Hani Choudhry, Howard Y. Chang +2 more

Malaria-driven expansion of adaptive-like functional CD56-negative NK cells correlates with clinical immunity to malaria

Science Translational Medicine(2023)10.1126/scitranslmed.add9012

N/A

0.587DataRank · unranked

49 citations

Shenghuan Sun, Perri C. Callaway, John Rek, Kathleen D. Press, Kattria van der Ploeg +26 more

Systematic discovery and perturbation of regulatory genes in human T cells reveals the architecture of immune networks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.18.440363

N/A

0.510DataRank · unranked

29 citations

Oren Shaked, Sahin Naqvi, Nicholas A. Sinnott-Armstrong, Arwa S. Kathiria, Amy F. Chen +5 more

Global loss of promoter–enhancer connectivity and rebalancing of gene expression during early colorectal cancer carcinogenesis

Nature Cancer(2024)10.1038/s43018-024-00823-z

N/A

0.457DataRank · unranked

20 citations

Hayan Lee, Shannon White, Annika K. Weimer, Emma Monte, Aaron M. Horning +21 more

The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.16.342857

N/A

0.434DataRank · unranked

17 citations

Viviana I. Risca, David L. Reynolds, James Chappell, Adam J. Rubin, Namyoung Jung +11 more

Multiomic analysis of familial adenomatous polyposis reveals molecular pathways associated with early tumorigenesis

Nature Cancer(2024)10.1038/s43018-024-00831-z

N/A

0.416DataRank · unranked

15 citations

Casey Hanson, Si Wu, Aaron M. Horning, Nasim Barapour, Stephanie Nevins +30 more

Scalable high-performance single cell data analysis with BPCells

10.1101/2025.03.27.645853

N/A

0.416DataRank · unranked

15 citations

William J. Greenleaf, Benjamin Parks

Single-cell epigenomic identification of inherited risk loci in Alzheimer’s and Parkinson’s disease

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.06.896159

N/A

0.406DataRank · unranked

14 citations

Anna Shcherbina, Soumya Kundu, Michael J. Gloudemans, Laure Frésard, Jeffrey M. Granja +12 more

Transcriptional and chromatin-based partitioning mechanisms uncouple protein scaling from cell size

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.28.272690

N/A

0.405DataRank · unranked

8 citations

Devon Chandler‐Brown, Jacob Kim, Maurice Langhinrichs, Georgi K. Marinov, William J. Greenleaf +4 more

Detection and analysis of complex structural variation in human genomes across populations and in brains of donors with psychiatric disorders

Cell(2024)10.1016/j.cell.2024.09.014

N/A

0.399DataRank · unranked

8 citations

Joseph G. Arthur, Hanmin Guo, Taeyoung Kim, Yi‐Ling Huang, Reenal Pattni +32 more

Targeted profiling of human extrachromosomal DNA by CRISPR-CATCH

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.28.470285

N/A

0.396DataRank · unranked

13 citations

Jens Luebeck, Siavash R. Dehkordi, Ceyda Çoruh, Julie A. Law, William J. Greenleaf +4 more

The chromatin landscape of the euryarchaeon Haloferax volcanii

Genome biology(2023)10.1186/s13059-023-03095-5

N/A

0.360DataRank · unranked

10 citations

S. Tansu Bagdatli, Tong Wu, Chuan He, Anshul Kundaje, William J. Greenleaf +1 more

High-throughput single-cell chromatin accessibility CRISPR screens enable unbiased identification of regulatory networks in cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.02.364265

N/A

0.360DataRank · unranked

10 citations

Jeffrey M. Granja, William J. Greenleaf, Sarah E. Pierce

The chromatin organization of a chlorarachniophyte nucleomorph genome

Genome biology(2022)10.1186/s13059-022-02639-5

N/A

0.330DataRank · unranked

8 citations

Xinyi Chen, Tong Wu, Chuan He, Arthur Grossman, Anshul Kundaje +2 more

Systems biology approaches to unravel lymphocyte subsets and function

Current Opinion in Immunology(2023)10.1016/j.coi.2023.102323

N/A

0.312DataRank · unranked

7 citations

William J. Greenleaf, Sean C. Bendall, YeEun Kim

Genetics and Environment Distinctively Shape the Human Immune Cell Epigenome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.29.546792

N/A

0.269DataRank · unranked

5 citations

Manoj Hariharan, Wubin Ding, Anna Bartlett, Cesar Barragan, Rosa G. Castanon +39 more

Innate immune molecular landscape following controlled human influenza virus infection

Cell Reports(2025)10.1016/j.celrep.2025.116312

N/A

0.269DataRank · unranked

5 citations

Sindhu Vangeti, Wan-Sze Cheng, Pankaj Agarwal, Antonio Cappuccio, Wenliang Wang +18 more

The chromatin landscape of the histone-possessingBacteriovoraxbacteria

Genome Research(2024)10.1101/gr.279418.124

N/A

0.245DataRank · unranked

4 citations

Benjamin R. Doughty, Anshul Kundaje, William J. Greenleaf, Georgi K. Marinov

Cell type–specific purifying selection of synonymous mitochondrial DNA variation

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2505704122

N/A

0.241DataRank · unranked

4 citations

Patrick Maschmeyer, Yajie Yin, Jacob C. Gutierrez, Ryan S. Dhindsa, Anne-Sophie Gribling-Burrer +25 more

Codon affinity in mitochondrial DNA shapes evolutionary and somatic fitness

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.23.537997

N/A

0.241DataRank · unranked

4 citations

Yajie Yin, Jacob C. Gutierrez, Ryan S. Dhindsa, Anne-Sophie Gribling-Burrer, Yu-Hsin Hsieh +25 more

Genetics and environment distinctively shape the human immune cell epigenome

Nature Genetics(2026)10.1038/s41588-025-02479-6

N/A

0.216DataRank · unranked

3 citations

Manoj Hariharan, Wubin Ding, Anna Bartlett, Cesar Barragan, Rosa G. Castanon +40 more

Direct profiling of genome-wide dCas9 and Cas9 specificity using ssDNA mapping (CasKAS)

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.16.440202

N/A

0.208DataRank · unranked

3 citations

Samuel H. Kim, S. Tansu Bagdatli, Alexandro E. Trevino, Josh Tycko, Tong Wu +6 more

The chromatin landscape of the euryarchaeon Haloferax volcanii

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.22.501187

N/A

0.208DataRank · unranked

3 citations

S. Tansu Bagdatli, Tong Wu, Chuan He, Anshul Kundaje, William J. Greenleaf +1 more

Generation of a dual edited human induced pluripotent stem cell Myl7-GFP reporter line with inducible CRISPRi/dCas9

Stem Cell Research(2022)10.1016/j.scr.2022.102754

N/A

0.165DataRank · unranked

2 citations

Nikë Bharucha, Jennifer Arthur Ataam, Alexandra A. Gavidia, William J. Greenleaf, Ioannis Karakikes +1 more

Multi-omic Analysis of Familial Adenomatous Polyposis Reveals Molecular Pathways and Polyclonal Spreading Associated with Early Tumorigenesis

Research Square(2021)10.21203/rs.3.rs-515393/v1

N/A

0.165DataRank · unranked

2 citations

Aaron M. Horning, Edward D. Esplin, Si Wu, Casey Hanson, Nasim Bararpour +27 more

Global loss of promoter-enhancer connectivity and rebalancing of gene expression during early colorectal cancer carcinogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.26.505505

N/A

0.110DataRank · unranked

1 citations

Hayan Lee, Shannon White, Annika K. Weimer, Emma Monte, Aaron Horning +21 more

An automated ATAC-seq method reveals sequence determinants of transcription factor dose response in the open chromatin

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.24.666684

N/A

0.104DataRank · unranked

1 citations

Masaru Shimasawa, Sidney Y. Vermeulen, Samuel H. Kim, Nika Iremadze, Doron Lipson +3 more

Decoding Chromatin Dynamics in Cardiac Organoids Reveals Genetic Drivers of Human Heart Development and Disease

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.15.680997

N/A

0.104DataRank · unranked

1 citations

Ryan Zhao, Salil Deshpande, Jackson Powell, Megha Agarwal, Yuan Liu +13 more

Global mapping of RNA-chromatin contacts reveals a proximity-dominated connectivity model for ncRNA-gene interactions

Nature Communications(2023)10.1038/s41467-023-41848-9

N/A

0DataRank · unranked

26 citations

Owen K. Smith, David Jukam, Kelsey A. Fryer, William J. Greenleaf, Aaron F. Straight +1 more

Processed data supplementary to "Systematic benchmarking of single-cell ATAC sequencing protocols"

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.5850231

Top 100%

0DataRank

Top 100%0 citations

Christopher Flerin, Paula Soler, Albert Rafels, Gert Hulselmans, Valerie Christiaens +25 more

Transcription-dependent domain-scale 3D genome organization in dinoflagellates

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.01.181685

N/A

0DataRank · unranked

5 citations

Alexandro E. Trevino, T. Xiang, Anshul Kundaje, Arthur Grossman, William J. Greenleaf +1 more

Multi-omic profiling reveals widespread dysregulation of innate immunity and hematopoiesis in COVID-19

The Journal of Experimental Medicine(2021)10.1084/jem.20210582

N/A

0DataRank · unranked

230 citations

Madeline J. Lee, Bei Wei, Benjamin Parks, Ruoxi Pi, Giovanny J. Martínez-Colón +52 more

Single-cell transcriptomic analysis of the adult mouse spinal cord reveals molecular diversity of autonomic and skeletal motor neurons

Nature Neuroscience(2021)10.1038/s41593-020-00795-0

N/A

0DataRank · unranked

223 citations

Sandy Klemm, Jennifer L. Shadrach, Kevin A. Guttenplan, Lisa Nakayama, Arwa S. Kathiria +6 more

Quantification of Cas9 binding and cleavage across diverse guide sequences maps landscapes of target engagement

Science Advances(2021)10.1126/sciadv.abe5496

N/A

0DataRank · unranked

65 citations

Winston R. Becker, Hua Bai, Janice S. Chen, Jennifer A. Doudna, William J. Greenleaf +1 more

High-throughput dissection of the thermodynamic and conformational properties of a ubiquitous class of RNA tertiary contact motifs

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2109085118

N/A

0DataRank · unranked

21 citations

Sarah K. Denny, John H. Shin, Aurora Alvarez‐Buylla, William J. Greenleaf, Daniel Herschlag +1 more

An optimized ATAC-seq protocol for genome-wide mapping of active regulatory elements in primary mouse cortical neurons

STAR Protocols(2021)10.1016/j.xpro.2021.100854

N/A

0DataRank · unranked

7 citations

Zohar Shipony, Georgi K. Marinov, William J. Greenleaf, Aaron D. Gitler, Maya Maor-Nof

RNA polymerase II dynamics and mRNA stability feedback scale mRNA in proportion to cell size

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.20.461005

N/A

0DataRank · unranked

20 citations

Georgi K. Marinov, Huan Zheng, Crystal Yee Tsui, Andrew W. Jones, J. Greenwood +5 more

Integrating transcription factor abundance with chromatin accessibility in human erythroid lineage commitment

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.23.436609

N/A

0DataRank · unranked

5 citations

Amy F. Chen, Patricia Favaro, Warren D. Reynolds, Fabian Mueller, Luciene Borges +6 more

A comprehensive thermodynamic model for RNA binding by the Saccharomyces cerevisiae Pumilio protein PUF4

Research Square(2021)10.21203/rs.3.rs-1041087/v1

N/A

0DataRank · unranked

2 citations

Lauren D. Hagler, Winston R. Becker, Inga Jarmoskaite, Pavanapuresan P. Vaidyanathan, Sarah K. Denny +3 more

Increased ACTL6A Occupancy Within mSWI/SNF Chromatin Remodelers Drives Human Squamous Cell Carcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.22.435873

N/A

0DataRank · unranked

1 citations

Zohar Shipony, Ann Kuo, Kyle M. Loh, William J. Greenleaf, Gerald R. Crabtree +1 more

Aging-associated HELIOS deficiency in naive CD4+ T cells alters chromatin remodeling and promotes effector cell responses

Nature Immunology(2022)10.1038/s41590-022-01369-x

N/A

0DataRank · unranked

86 citations

Rohit R. Jadhav, Wenqiang Cao, Isabel N. Goronzy, Tuantuan Zhao, Jun Jin +7 more

A comprehensive thermodynamic model for RNA binding by the Saccharomyces cerevisiae Pumilio protein PUF4

Nature Communications(2022)10.1038/s41467-022-31968-z

N/A

0DataRank · unranked

19 citations

Lauren D. Hagler, Winston R. Becker, Inga Jarmoskaite, Pavanapuresan P. Vaidyanathan, Sarah K. Denny +3 more

Short tandem repeats bind transcription factors to tune eukaryotic gene expression

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.24.493321

N/A

0DataRank · unranked

20 citations

Amr M. Alexandari, Michael G.B. Hayes, Emil Marklund, Julia M. Schaepe, Arjun K. Aditham +9 more

Global mapping of RNA-chromatin contacts reveals a proximity-dominated connectivity model for ncRNA-gene interactions

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.02.506418

N/A

0DataRank · unranked

3 citations

Owen K. Smith, David Jukam, Kelsey A. Fryer, William J. Greenleaf, Aaron F. Straight +1 more

Malaria-driven expansion of adaptive-like functional CD56-negative NK cells correlates with clinical immunity to malaria

Research Square(2022)10.21203/rs.3.rs-1820334/v1

N/A

0DataRank · unranked

2 citations

Maureen Ty, Shenghuan Sun, Perri C. Callaway, John Rek, Kathleen D. Press +25 more

Global loss of fine-scale chromatin architecture and rebalancing of gene expression during early colorectal cancer development

Research Square(2022)10.21203/rs.3.rs-2003187/v1

N/A

0DataRank · unranked

0 citations

Yizhou Zhu, Hayan Lee, Annika K. Weimer, Aaron M. Horning, Stephanie Nevins +17 more

Integrated single-cell chromatin and transcriptomic analyses of human scalp reveal etiological insights into genetic risk for hair and skin disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.28.509620

Top 100%

0DataRank

Top 100%0 citations

Chen Wang, Justin Ko, Eon J. Rios, Sumaira Z. Aasi, Mark M. Davis +3 more

Dissecting the energetic architecture within an RNA tertiary structural motif via high-throughput thermodynamic measurements

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.15.518780

N/A

0DataRank · unranked

0 citations

Steve Bonilla, Sarah K. Denny, William J. Greenleaf, Daniel Herschlag, John H. Shin

Integrated single-cell chromatin and transcriptomic analyses of human scalp identify gene-regulatory programs and critical cell types for hair and skin diseases

Nature Genetics(2023)10.1038/s41588-023-01445-4

N/A

0DataRank · unranked

73 citations

Chen Wang, Justin Ko, Eon J. Rios, Sumaira Z. Aasi, Mark M. Davis +3 more

Multifaceted role for p53 in pancreatic cancer suppression

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2211937120

N/A

0DataRank · unranked

46 citations

Brittany M. Flowers, Paweł K. Mazur, James J. Lee, Fabian Müller, Sarah K. Denny +7 more

Processed data supplementary to "Systematic benchmarking of single-cell ATAC sequencing protocols"

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.5850232

Top 100%

0DataRank

Top 100%0 citations

Christopher Flerin, Paula Soler, Albert Rafels, Gert Hulselmans, Valerie Christiaens +25 more

Current and future perspectives of single-cell multi-omics technologies in cardiovascular research

Nature Cardiovascular Research(2023)10.1038/s44161-022-00205-7

N/A

0DataRank · unranked

16 citations

Wei Qiang Seow, Angela Zhang, Siyeon Rhee, Wing Hung Wong, William J. Greenleaf +2 more

CasKAS: direct profiling of genome-wide dCas9 and Cas9 specificity using ssDNA mapping

Genome biology(2023)10.1186/s13059-023-02930-z

N/A

0DataRank · unranked

13 citations

Samuel H. Kim, S. Tansu Bagdatli, Soon Il Higashino, Alexandro E. Trevino, Josh Tycko +7 more

Dissecting the energetic architecture within an RNA tertiary structural motif via high-throughput thermodynamic measurements

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2220485120

N/A

0DataRank · unranked

9 citations

Steve Bonilla, Sarah K. Denny, William J. Greenleaf, Daniel Herschlag, John H. Shin

Single-cell chromatin state transitions during epigenetic memory formation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.03.560616

N/A

0DataRank · unranked

7 citations

Carolina Rios-Martinez, Abby R. Thurm, Michaela M. Hinks, Benjamin R. Doughty, Joydeb Sinha +6 more

Genome-wide distribution of 5-hydroxymethyluracil and chromatin accessibility in the Breviolum minutum genome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.18.558303

N/A

0DataRank · unranked

2 citations

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bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.30.564843

N/A

0DataRank · unranked

1 citations

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Nature Immunology(2024)10.1038/s41590-024-01807-y

N/A

0DataRank · unranked

27 citations

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Terminal deoxynucleotidyl transferase and CD84 identify human multi-potent lymphoid progenitors

Nature Communications(2024)10.1038/s41467-024-49883-w

N/A

0DataRank · unranked

7 citations

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STAR Protocols(2024)10.1016/j.xpro.2024.102941

N/A

0DataRank · unranked

1 citations

Anshul Kundaje, William J. Greenleaf, Arthur Grossman, Georgi K. Marinov

Rampant transcription replication conflict creates therapeutic vulnerability in extrachromosomal DNA containing cancers

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.29.586681

N/A

0DataRank · unranked

2 citations

Natasha E. Weiser, Guiping Wang, Sudhir Chowdhry, Ellis J. Curtis, Yanding Zhao +20 more

Compact RNA sensors for increasingly complex functions of multiple inputs

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.04.572289

N/A

0DataRank · unranked

0 citations

Johan O. L. Andreasson, Feriel Mélaïne, Wipapat Kladwang, Michelle J. Wu, Fernando Portela +9 more

Innate immune epigenomic landscape following controlled human influenza virus infection

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.20.612974

N/A

0DataRank · unranked

0 citations

Sindhu Vangeti, Wan-Sze Cheng, Pankaj Agarwal, Antonio Cappuccio, Wenliang Wang +18 more

Exploring the energetic and conformational properties of the sequence space connecting naturally occurring RNA tetraloop receptor motifs

RNA(2024)10.1261/rna.080039.124

N/A

0DataRank · unranked

0 citations

Lena M. Cuevas, Rohit Roy, Steve Bonilla, Hashim M. Al‐Hashimi, William J. Greenleaf +2 more

High-throughput DNA melt measurements enable improved models of DNA folding thermodynamics

Nature Communications(2025)10.1038/s41467-025-60455-4

N/A

0DataRank · unranked

4 citations

Eesha Sharma, Hannah K. Wayment-Steele, Winston R. Becker, Anthony D. Ho, Emil Marklund +2 more

Compact RNA sensors for increasingly complex functions of multiple inputs

Nature Chemistry(2025)10.1038/s41557-025-01907-8

N/A

0DataRank · unranked

3 citations

Johan O. L. Andreasson, Feriel Mélaïne, Wipapat Kladwang, Michelle J. Wu, Fernando Portela +9 more

Dissecting epigenome dynamics in human immune cells upon viral and chemical exposure by multimodal single-cell profiling

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.09.675101

N/A

0DataRank · unranked

1 citations

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bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.25.678665

N/A

0DataRank · unranked

0 citations

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