🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Remo Rohs

University of Southern California

ORCID: 0000-0003-1752-1884

Also affiliated with California Southern University, Los Angeles Medical Center, Southern States University

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile
1.2Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

DNAproDB: an updated database for the automated and interactive analysis of protein–DNA complexes

Nucleic Acids Research(2024)10.1093/nar/gkae970
Top 24%
0.848DataRank
Top 24%38 citations

Ari S Cohen, Jared M. Sagendorf, Helen M. Berman, Remo Rohs, Raktim Mitra

Papers

Driven by 30 papers — median percentile 64. Top paper: “DNAproDB: an updated database for the automated and interactive analysis of protein–DNA complexes”.

DNAproDB: an updated database for the automated and interactive analysis of protein–DNA complexes

Nucleic Acids Research(2024)10.1093/nar/gkae970
Top 24%
0.848DataRank
Top 24%38 citations

Ari S Cohen, Jared M. Sagendorf, Helen M. Berman, Remo Rohs, Raktim Mitra

Geometric deep learning of protein–DNA binding specificity

Nature Methods(2024)10.1038/s41592-024-02372-w
N/A
0.635DataRank · unranked
68 citations

Jinsen Li, Jared M. Sagendorf, Yibei Jiang, Ari S Cohen, Tsu-Pei Chiu +3 more

Genome information processing by the INO80 chromatin remodeler positions nucleosomes

Nature Communications(2021)10.1038/s41467-021-23016-z
N/A
0.614DataRank · unranked
59 citations

Nils Krietenstein, Vanessa Niebauer, Yingfei Wang, Kevin Schall, Manuela Moldt +6 more

Deep DNAshape webserver: prediction and real-time visualization of DNA shape considering extendedk-mers

Nucleic Acids Research(2024)10.1093/nar/gkae433
N/A
0.525DataRank · unranked
15 citations

Remo Rohs, Jinsen Li

Regulatory encoding of quantitative variation in spatial activity of a Drosophila enhancer

Science Advances(2020)10.1126/sciadv.abe2955
N/A
0.520DataRank · unranked
31 citations

Yaqun Xin, Liucong Ling, Bettina Mühling, Rita Jaenichen, David Hörl +13 more

DNA sequence and chromatin differentiate sequence-specific transcription factor binding in the human malaria parasite Plasmodium falciparum

Nucleic Acids Research(2024)10.1093/nar/gkae585
N/A
0.467DataRank · unranked
16 citations

Yuning Zhang, Alan S. Brown, J.R. Horton, Gabrielle A. Josling, Tsu-Pei Chiu +5 more

RNAscape: geometric mapping and customizable visualization of RNA structure

Nucleic Acids Research(2024)10.1093/nar/gkae269
N/A
0.442DataRank · unranked
8 citations

Ari S Cohen, Remo Rohs, Raktim Mitra

RNAproDB: A Webserver and Interactive Database for Analyzing Protein–RNA Interactions

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.169012
Top 48%
0.377DataRank
Top 48%8 citations

Ari S Cohen, Wei Yu Tang, Hirad Hosseini, Yongchan Hong, Helen M. Berman +2 more

Probing the role of the protonation state of a minor groove-linker histidine in Exd-Hox–DNA binding

Biophysical Journal(2023)10.1016/j.bpj.2023.12.013
N/A
0.345DataRank · unranked
9 citations

Tsu-Pei Chiu, Raktim Mitra, Remo Rohs, Yibei Jiang

Top-Down Crawl: a method for the ultra-rapid and motif-free alignment of sequences with associated binding metrics

Bioinformatics(2022)10.1093/bioinformatics/btac653
N/A
0.292DataRank · unranked
6 citations

Tsu-Pei Chiu, Remo Rohs, Brendon H Cooper

Deciphering the regulatory logic of a Drosophila enhancer through systematic sequence mutagenesis and quantitative image analysis

bioRxiv (Cold Spring Harbor Laboratory)10.1101/2020.06.24.169748
N/A
0.256DataRank · unranked
3 citations

Yaqun Xin, Liucong Ling, Bettina Mühling, Rita Jaenichen, David Hörl +13 more

Genome information processing by the INO80 chromatin remodeler positions nucleosomes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.03.366690
N/A
0.104DataRank · unranked
1 citations

Nils Krietenstein, Vanessa Niebauer, Yingfei Wang, Kevin Schall, Manuela Moldt +6 more

DNAdesign: feature-aware in silico design of synthetic DNA through mutation

Bioinformatics(2025)10.1093/bioinformatics/btaf052
N/A
0.104DataRank · unranked
1 citations

Jinsen Li, Tsu-Pei Chiu, Nicolas Gompel, Remo Rohs, Yingfei Wang

Hand2 represses non-cardiac cell fates through chromatin remodeling at cis- regulatory elements

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.23.559156
N/A
0.104DataRank · unranked
1 citations

Brendon H Cooper, Paul Yim, Kira Chan, Wesley Gong, Lucy Wheatley +4 more

Targeting circadian transcriptional programs through a cis-regulatory mechanism in triple negative breast cancer

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.26.590360
N/A
0DataRank · unranked
1 citations

Tsu-Pei Chiu, Lili Zhou, Priscilla Chan, Tia Tyrsett Kuo, Francesca Battaglin +9 more

Novel fold and wing structure of Forkhead transcription factor facilitate DNA binding

Nucleic Acids Research(2025)10.1093/nar/gkaf946
N/A
0DataRank · unranked
1 citations

Yibei Jiang, Yuying Sun, Fariborz Nasertorabi, Jesse A. Weller, Raktim Mitra +5 more

Contribution of DNA breathing to physical interactions with transcription factors

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.20.633840
N/A
0DataRank · unranked
0 citations

Ben Lai, Tsu-Pei Chiu, Manish Bhattarai, Sheng Qian, A. R. Bishop +5 more

Epigenetic competition reveals density-dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2002933117
N/A
0DataRank · unranked
34 citations

Bo Cao, Patricia Aquino, Tsu-Pei Chiu, Chao Chen, Susu Jiang +7 more

Landscape of DNA binding signatures of myocyte enhancer factor-2B reveals a unique interplay of base and shape readout

Nucleic Acids Research(2020)10.1093/nar/gkaa642
N/A
0DataRank · unranked
27 citations

Brendon H Cooper, Xiao Lei, Rosa Di Felice, Lin Chen, Remo Rohs +1 more

Crystal Structures of Ternary Complexes of MEF2 and NKX2–5 Bound to DNA Reveal a Disease Related Protein–Protein Interaction Interface

Journal of Molecular Biology(2020)10.1016/j.jmb.2020.07.004
N/A
0DataRank · unranked
5 citations

Jun Zhao, Jared M. Sagendorf, Niroop Rajashekar, Jiang Xu, Ana Carolina Dantas Machado +5 more

Humanizing the yeast origin recognition complex

Nature Communications(2021)10.1038/s41467-020-20277-y
N/A
0DataRank · unranked
55 citations

Ming Fung Cheung, Jinsen Li, Yongqian Zhao, Wai Hei Lam, Vincy Wing Sze Ho +5 more

It is in the flanks: Conformational flexibility of transcription factor binding sites

Biophysical Journal(2022)10.1016/j.bpj.2022.09.020
N/A
0DataRank · unranked
31 citations

Jinsen Li, Yibei Jiang, Remo Rohs, Tsu-Pei Chiu

Physicochemical models of protein–DNA binding with standard and modified base pairs

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2205796120
N/A
0DataRank · unranked
27 citations

Satyanarayan Rao, Remo Rohs, Tsu-Pei Chiu

DNA binding specificity of all four Saccharomyces cerevisiae forkhead transcription factors

Nucleic Acids Research(2023)10.1093/nar/gkad372
N/A
0DataRank · unranked
8 citations

Ana Carolina Dantas Machado, Yan Gan, Oscar M. Aparicio, Remo Rohs, Brendon H Cooper

DeepPBS: Geometric deep learning for interpretable prediction of protein–DNA binding specificity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.15.571942
N/A
0DataRank · unranked
3 citations

Jinsen Li, Jared M. Sagendorf, Yibei Jiang, Tsu-Pei Chiu, Remo Rohs +1 more

Deep DNAshape: Predicting DNA shape considering extended flanking regions using a deep learning method

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.22.563383
N/A
0DataRank · unranked
2 citations

Tsu-Pei Chiu, Remo Rohs, Jinsen Li

DrugHIVE: Target-specific spatial drug design and optimization with a hierarchical generative model

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.22.573155
N/A
0DataRank · unranked
2 citations

Remo Rohs, Jesse A. Weller

Predicting DNA structure using a deep learning method

Nature Communications(2024)10.1038/s41467-024-45191-5
N/A
0DataRank · unranked
76 citations

Tsu-Pei Chiu, Remo Rohs, Jinsen Li

Structure-Based Drug Design with a Deep Hierarchical Generative Model

Journal of Chemical Information and Modeling(2024)10.1021/acs.jcim.4c01193
N/A
0DataRank · unranked
41 citations

Remo Rohs, Jesse A. Weller

PNAbind: Structure-based prediction of protein-nucleic acid binding using graph neural networks

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.27.582387
N/A
0DataRank · unranked
1 citations

Raktim Mitra, Jiawei Huang, Xiaojiang S. Chen, Remo Rohs, Jared M. Sagendorf