Alexander V. Misharin

NeuroscienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

8.7Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

An integrated cell atlas of the lung in health and disease

Nature Medicine(2023)10.1038/s41591-023-02327-2

Top 4%

5.0DataRank

Top 4%781 citations

Ciro Ramírez-Suástegui, Tessa E. Gillett, Luke Zappia, Elo Madissoon, Nikolay S. Markov +87 more

Papers

Driven by 55 papers — median percentile 83. Top paper: “An integrated cell atlas of the lung in health and disease”.

An integrated cell atlas of the lung in health and disease

Nature Medicine(2023)10.1038/s41591-023-02327-2

Top 4%

5.0DataRank

Top 4%781 citations

Ciro Ramírez-Suástegui, Tessa E. Gillett, Luke Zappia, Elo Madissoon, Nikolay S. Markov +87 more

An integrated cell atlas of the human lung in health and disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.10.483747

Top 8%

2.8DataRank

Top 8%97 citations

Daniel Strobl, Luke Zappia, Nikolay S. Markov, Laure-Emmanuelle Zaragosi, Marie-Jeanne Arguel +77 more

Chronic lung diseases are associated with gene expression programs favoring SARS-CoV-2 entry and severity

Nature Communications(2021)10.1038/s41467-021-24467-0

N/A

2.0DataRank · unranked

43 citations

Nichelle I. Winters, Mei-i Chung, Chitra Joseph, Austin J. Gutierrez, Arun C. Habermann +67 more

Mapping single-cell data to reference atlases by transfer learning

Nature Biotechnology(2021)10.1038/s41587-021-01001-7

N/A

0.962DataRank · unranked

610 citations

Mohsen Naghipourfar, Malte D. Luecken, Matin Khajavi, Maren Büttner, Marco Wagenstetter +9 more

Local and systemic responses to SARS-CoV-2 infection in children and adults

Nature(2021)10.1038/s41586-021-04345-x

N/A

0.887DataRank · unranked

368 citations

Kaylee B. Worlock, Ni Huang, Rik G.H. Lindeboom, Colin R. Butler, Natsuhiko Kumasaka +56 more

The discovAIR project: a roadmap towards the Human Lung Cell Atlas

European Respiratory Journal(2022)10.1183/13993003.02057-2021

Top 25%

0.797DataRank

Top 25%26 citations

Laure-Emmanuelle Zaragosi, Elo Madissoon, Avi Srivastava, Alexandra B. Firsova, Elena De Domenico +36 more

Resetting proteostasis with ISRIB promotes epithelial differentiation to attenuate pulmonary fibrosis

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2101100118

N/A

0.688DataRank · unranked

97 citations

Nikolay S. Markov, Ziyan Lu, Raul Piseaux Aillon, Saul Soberanes, Constance E. Runyan +19 more

Lactate-dependent transcriptional regulation controls mammalian eye morphogenesis

Nature Communications(2023)10.1038/s41467-023-39672-2

N/A

0.542DataRank · unranked

36 citations

Jason Miska, Marc A. Morgan, Priyam Patel, Leah K. Billingham, Neha Joshi +13 more

The Sphingosine Kinase 1 Inhibitor, PF543, Mitigates Pulmonary Fibrosis by Reducing Lung Epithelial Cell mtDNA Damage and Recruitment of Fibrogenic Monocytes

International Journal of Molecular Sciences(2020)10.3390/ijms21165595

N/A

0.510DataRank · unranked

29 citations

Seok-Jo Kim, Long Shuang Huang, Satoshi Watanabe, Nikita Joshi, Kinola J.N. Williams +11 more

Residual endotoxin induces primary graft dysfunction through ischemia-reperfusion-primed alveolar macrophages

Journal of Clinical Investigation(2020)10.1172/jci135838

N/A

0.505DataRank · unranked

28 citations

Emilia Lecuona, Stephen Chiu, Qiang Wu, Melissa Querrey, Ramiro Fernandez +17 more

Prolonged exposure to lung-derived cytokines is associated with activation of microglia in patients with COVID-19

JCI Insight(2024)10.1172/jci.insight.178859

N/A

0.457DataRank · unranked

20 citations

Taylor A. Poor, Lango Sichizya, Estefani Diaz, Joseph I. Bailey, Sahil Soni +14 more

The local and systemic response to SARS-CoV-2 infection in children and adults

medRxiv(2021)10.1101/2021.03.09.21253012

N/A

0.385DataRank · unranked

12 citations

Kaylee B. Worlock, Ni Huang, Rik G.H. Lindeboom, Colin R. Butler, Natsuhiko Kumasaka +50 more

Individual meropenem epithelial lining fluid and plasma PK/PD target attainment

Antimicrobial Agents and Chemotherapy(2023)10.1128/aac.00727-23

N/A

0.312DataRank · unranked

7 citations

Paul R. Yarnold, Marc H. Scheetz, Michael Neely, Mengjia Kang, Helen K. Donnelly +10 more

RAAS blockade, kidney disease, and expression of ACE2 , the entry receptor for SARS-CoV-2, in kidney epithelial and endothelial cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.23.167098

N/A

0.312DataRank · unranked

7 citations

Katherine A. Vernon, Michal Slyper, Julia Waldman, Malte D. Luecken, Kirk Gosik +13 more

Influenza-induced activation of recruited alveolar macrophages during the early inflammatory phase drives lung injury and lethality

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.08.141309

N/A

0.277DataRank · unranked

3 citations

Kishore R. Anekalla, Yuan‐Shih Hu, Jennifer Davis, Mark Ciesielski, Gaurav Gadhvi +11 more

Transitions in lung microbiota landscape associate with distinct patterns of pneumonia progression

Cell Host & Microbe(2025)10.1016/j.chom.2025.11.011

N/A

0.269DataRank · unranked

5 citations

Stefanie Huttelmaier, Chiagozie I. Pickens, Anahid A. Moghadam, Hiam Abdala‐Valencia, Jiaxian Shen +95 more

Developing and validating machine learning models to predict next-day extubation

Scientific Reports(2025)10.1038/s41598-025-12264-4

N/A

0.241DataRank · unranked

4 citations

Alec Peltekian, Mengjia Kang, Nikolay S. Markov, Mengou Zhu, Kevin Grudzinski +16 more

An integrated cell atlas of the human lung in health and disease

Research Square(2022)10.21203/rs.3.rs-1438584/v1

Top 71%

0.127DataRank

Top 71%1 citations

Avi Srivastava, Daniel Strobl, Luke Zappia, Elo Madissoon, Nikolay S. Markov +80 more

Mapping cells to gene programs

Research Square(2023)10.21203/rs.3.pex-2092/v1

N/A

0.104DataRank · unranked

1 citations

Sergei Rybakov, Karin Hrovatin, Soroor Hediyeh-zadeh, Alexander V. Misharin, Fabian Joachim Theis +2 more

Tissue-resident, extravascular Ly6c− monocytes are critical for inflammation in the synovium

Cell Reports(2023)10.1016/j.celrep.2023.112513

N/A

0DataRank · unranked

16 citations

Shang Yang Chen, Yidan Wang, Gaurav Gadhvi, Maximilian G. Mayr, Carla M. Cuda +20 more

Hypercapnia alters stroma-derived Wnt production to limit β-catenin signaling and proliferation in AT2 cells

JCI Insight(2023)10.1172/jci.insight.159331

N/A

0DataRank · unranked

15 citations

Lynn C. Welch, Natalia Magnani, Ziyou Ren, Hyebin Han, Patricia L. Brazee +15 more

Tissue-resident alveolar macrophages reduce O 3 -induced inflammation via MerTK mediated efferocytosis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.06.565865

N/A

0DataRank · unranked

3 citations

Aaron Vose, Anastasiya Birukova, Kaitlyn Lewars, R. Ian Cumming, Michaela C. Albright +13 more

Profibrotic monocyte-derived alveolar macrophages are expanded in patients with persistent respiratory symptoms and radiographic abnormalities after COVID-19

Nature Immunology(2024)10.1038/s41590-024-01975-x

N/A

0DataRank · unranked

55 citations

Connor Puritz, Karolina J. Senkow, Nikolay S. Markov, Estefani Diaz, Emmy Jonasson +27 more

Mitochondria regulate proliferation in adult cardiac myocytes

Journal of Clinical Investigation(2024)10.1172/jci165482

N/A

0DataRank · unranked

23 citations

Kimberly A. Smith, Paul T. Mungai, V. Joseph Dudley, Kathryn A. Helmin, Benjamin D. Singer +20 more

Tissue-Resident Alveolar Macrophages Reduce Ozone-induced Inflammation via MerTK-mediated Efferocytosis

American Journal of Respiratory Cell and Molecular Biology(2024)10.1165/rcmb.2023-0390oc

N/A

0DataRank · unranked

21 citations

Aaron Vose, Anastasiya Birukova, Kaitlyn Lewars, R. Ian Cumming, Michaela C. Albright +13 more

Distinctive evolution of alveolar T cell responses is associated with clinical outcomes in unvaccinated patients with SARS-CoV-2 pneumonia

Nature Immunology(2024)10.1038/s41590-024-01914-w

N/A

0DataRank · unranked

17 citations

Ziyou Ren, Karolina J. Senkow, Rogan A. Grant, Catherine A. Gao, Elizabeth S. Malsin +91 more

Developing and validating a machine learning model to predict successful next-day extubation in the ICU

medRxiv(2024)10.1101/2024.06.28.24309547

N/A

0DataRank · unranked

3 citations

Alec Peltekian, Mengjia Kang, Nikolay S. Markov, Mengou Zhu, Kevin Grudzinski +16 more

Individual target pharmacokinetic/pharmacodynamic attainment rates among cefepime-treated patients admitted to the ICU with hospital-acquired pneumonia with and without ECMO

Antimicrobial Agents and Chemotherapy(2025)10.1128/aac.00102-25

N/A

0DataRank · unranked

1 citations

Monika Żurawska-Kliś, Emma Harlan, Marc H. Scheetz, MIchael N. Neely, Paul R. Yarnold +15 more

Large language models accurately identify immunosuppression in intensive care unit patients

Journal of the American Medical Informatics Association(2025)10.1093/jamia/ocaf141

N/A

0DataRank · unranked

1 citations

Mengjia Kang, M. Bak, Steven Tran, Anna Pawlowski, Prasanth Nannapaneni +87 more

Critical threshold target attainment rates for tazobactam combined with piperacillin among patients admitted to the ICU with hospital-acquired pneumonia

Antimicrobial Agents and Chemotherapy(2025)10.1128/aac.01766-25

N/A

0DataRank · unranked

1 citations

Marta Zurawska, Adrian Valadez, Emma Harlan, Marc H. Scheetz, Michael Neely +14 more

Tissue-resident skeletal muscle macrophages promote recovery from viral pneumonia-induced sarcopenia in normal aging

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.09.631996

N/A

0DataRank · unranked

3 citations

Lucy Luo, Lynn C. Welch, Ziyan Lu, Fei Chen, M. Schleck +15 more

Large language models outperform traditional structured data-based approaches in identifying immunosuppressed patients

medRxiv(2025)10.1101/2025.01.16.25320564

N/A

0DataRank · unranked

3 citations

Mengjia Kang, M. Bak, Steven Tran, Anna Pawlowski, Prasanth Nannapaneni +12 more

Profibrotic monocyte-derived alveolar macrophages as a biomarker and therapeutic target in systemic sclerosis-associated interstitial lung disease

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.07.669006

N/A

0DataRank · unranked

3 citations

Anthony J. Esposito, Karolina J. Senkow, M. Schleck, Luisa Cusick, Zhan Yu +61 more

Machine Learning Analysis of Electronic Health Records Identifies Interstitial Lung Disease and Predicts Mortality in Patients with Systemic Sclerosis

medRxiv(2025)10.1101/2025.06.02.25328786

N/A

0DataRank · unranked

0 citations

Kevin Grudzinski, B. Bemiss, Jane E. Dematte, Carrie Richardson, Mary Carns +27 more

Protocol for preparation of mouse synovium for flow cytometry and RNA-seq

STAR Protocols(2025)10.1016/j.xpro.2025.104207

N/A

0DataRank · unranked

0 citations

Carla M. Cuda, Salina Dominguez, Hadijat M. Makinde, Alexander V. Misharin, Yidan Wang +4 more

Development of a Pilot Machine Learning Model to Predict Successful Short-Term Treatment Success in Critically Ill Patients With Community-Acquired Pneumonia

CHEST Critical Care(2025)10.1016/j.chstcc.2025.100228

N/A

0DataRank · unranked

0 citations

Wan‐Ting Liao, Alec Peltekian, Nikolay S. Markov, Mengjia Kang, Luke V. Rasmussen +10 more

Pharmacokinetic-pharmacodynamic target attainment with continuous infusion piperacillin in patients admitted to the ICU with hospital-acquired pneumonia

Antimicrobial Agents and Chemotherapy(2025)10.1128/aac.01760-25

N/A

0DataRank · unranked

0 citations

Adrian Valadez, Emma Harlan, Ryan H. Williamson, Marc H. Scheetz, Michael Neely +14 more

Lung transplantation for patients with severe COVID-19

Science Translational Medicine(2020)10.1126/scitranslmed.abe4282

N/A

0DataRank · unranked

335 citations

Melissa Querrey, Nikolay S. Markov, Samuel S. Kim, Chitaru Kurihara, Rafael Garza‐Castillon +10 more

Impaired phagocytic function in CX3CR1 + tissue‐resident skeletal muscle macrophages prevents muscle recovery after influenza A virus‐induced pneumonia in old mice

Aging Cell(2020)10.1111/acel.13180

N/A

0DataRank · unranked

39 citations

Lynn C. Welch, Emilia Lecuona, Masahiko Shigemura, Luciano Amarelle, Hiam Abdala‐Valencia +14 more

Epithelial cell–specific loss of function of Miz1 causes a spontaneous COPD-like phenotype and up-regulates Ace2 expression in mice

Science Advances(2020)10.1126/sciadv.abb7238

N/A

0DataRank · unranked

23 citations

Cong Chen, Qiao Zhang, Alexander V. Misharin, Hiam Abdala‐Valencia, S. Marina Casalino‐Matsuda +21 more

Alveolitis in severe SARS-CoV-2 pneumonia is driven by self-sustaining circuits between infected alveolar macrophages and T cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.05.238188

N/A

0DataRank · unranked

25 citations

Luisa Morales‐Nebreda, Nikolay S. Markov, Suchitra Swaminathan, Estefany Rios-Guzman, Darryl A. Abbott +30 more

Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia

Nature(2021)10.1038/s41586-020-03148-w

N/A

0DataRank · unranked

778 citations

Luisa Morales‐Nebreda, Nikolay S. Markov, Suchitra Swaminathan, Melissa Querrey, Estefany Rios-Guzman +59 more

The lung microenvironment shapes a dysfunctional response of alveolar macrophages in aging

Journal of Clinical Investigation(2021)10.1172/jci140299

N/A

0DataRank · unranked

180 citations

Ziyou Ren, Nikita Joshi, Satoshi Watanabe, Thomas Stoeger, Monica Chi +29 more

Distinctive features of severe SARS-CoV-2 pneumonia

Journal of Clinical Investigation(2021)10.1172/jci149412

N/A

0DataRank · unranked

88 citations

Alexander V. Misharin, Karen M. Ridge, Benjamin D. Singer, Richard G. Wunderink, G. R. Scott Budinger

Age-related Differences in the Nasal Mucosal Immune Response to SARS-CoV-2

American Journal of Respiratory Cell and Molecular Biology(2021)10.1165/rcmb.2021-0292oc

N/A

0DataRank · unranked

48 citations

Andrew D. Prigge, Kishore R. Anekalla, Avani Shukla, Hanh Chi Do Umehara, Leah Setar +13 more

Regulator of Cell Cycle Protein (RGCC/RGC-32) Protects Against Pulmonary Fibrosis

American Journal of Respiratory Cell and Molecular Biology(2021)10.1165/rcmb.2021-0022oc

N/A

0DataRank · unranked

18 citations

Violeta Rus, Virginia Lockatell, Jean-Paul Courneya, Brian Hampton, Rita Fishelevich +6 more

Aging is associated with a systemic length-associated transcriptome imbalance

Nature Aging(2022)10.1038/s43587-022-00317-6

N/A

0DataRank · unranked

116 citations

Rogan A. Grant, Alexandra C. McQuattie‐Pimentel, Kishore R. Anekalla, Sophia S. Liu, Heliodoro Tejedor-Navarro +14 more

Lung Injury Induces Alveolar Type 2 Cell Hypertrophy and Polyploidy with Implications for Repair and Regeneration

American Journal of Respiratory Cell and Molecular Biology(2022)10.1165/rcmb.2021-0356oc

N/A

0DataRank · unranked

30 citations

Mariana Maciel, Satoshi Watanabe, Lynn C. Welch, Annette S. Flozak, Rogan A. Grant +8 more

CD11b suppresses TLR activation of nonclassical monocytes to reduce primary graft dysfunction after lung transplantation

Journal of Clinical Investigation(2022)10.1172/jci157262

N/A

0DataRank · unranked

28 citations

Stephen Chiu, Emilia Lecuona, Qiang Wu, Haiying Sun, Megan L. Anderson +7 more

Placental dysfunction influences fetal monocyte subpopulation gene expression in preterm birth

JCI Insight(2022)10.1172/jci.insight.155482

N/A

0DataRank · unranked

12 citations

Robert Birkett, Erika T. Lin, Linda M. Ernst, William A. Grobman, Suchitra Swaminathan +5 more

A Novel MIP-1–Expressing Macrophage Subtype in BAL Fluid from Healthy Volunteers

American Journal of Respiratory Cell and Molecular Biology(2022)10.1165/rcmb.2021-0123oc

N/A

0DataRank · unranked

7 citations

Elizabeth S. Malsin, Basil Khuder, Nikita Joshi, Gaurav Gadhvi, Annette S. Flozak +13 more

Individual target pharmacokinetic/pharmacodynamic attainment rates among meropenem-treated patients admitted to the ICU with hospital-acquired pneumonia

Journal of Antimicrobial Chemotherapy(2022)10.1093/jac/dkac245

N/A

0DataRank · unranked

4 citations

Marc H. Scheetz, Helen K. Donnelly, Alvaro Donayre, Mengjia Kang, Estefani Diaz +95 more

A machine learning approach identifies unresolving secondary pneumonia as a contributor to mortality in patients with severe pneumonia, including COVID-19

medRxiv(2022)10.1101/2022.09.23.22280118

N/A

0DataRank · unranked

2 citations

Nikolay S. Markov, Thomas Stoeger, Anna Pawlowski, Mengjia Kang, Prasanth Nannapaneni +16 more

Hypercapnia limits β-catenin-mediated alveolar type 2 cell progenitor function by altering Wnt production from adjacent fibroblasts

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.12.475264

N/A

0DataRank · unranked

0 citations

Lynn C. Welch, Natalia Magnani, Ziyou Ren, Patricia L. Brazee, Diego Celli +14 more

Machine learning links unresolving secondary pneumonia to mortality in patients with severe pneumonia, including COVID-19

Journal of Clinical Investigation(2023)10.1172/jci170682

N/A

0DataRank · unranked

55 citations

Nikolay S. Markov, Thomas Stoeger, Anna Pawlowski, Mengjia Kang, Prasanth Nannapaneni +15 more

Alexander V. Misharin

Indexed papers

Top data-sharing exemplar

Papers