Yoseph Barash

Also affiliated with University of Pennsylvania

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.756Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

MAJIQlopedia: an encyclopedia of RNA splicing variations in human tissues and cancer

Nucleic Acids Research(2023)10.1093/nar/gkad1043

Top 36%

0.548DataRank

Top 36%20 citations

San Jewell, Kristen W. Lynch, Andrei Thomas‐Tikhonenko, Yoseph Barash, Mathieu Quesnel-Vallières

Papers

Driven by 45 papers — median percentile 50. Top paper: “RNA splicing analysis using heterogeneous and large RNA-seq datasets”.

RNA splicing analysis using heterogeneous and large RNA-seq datasets

Nature Communications(2023)10.1038/s41467-023-36585-y

N/A

0.719DataRank · unranked

120 citations

Joseph K. Aicher, San Jewell, Matthew R. Gazzara, Caleb M. Radens, Anupama Jha +5 more

Retention of CD19 intron 2 contributes to CART-19 resistance in leukemias with subclonal frameshift mutations in CD19

Leukemia(2020)10.1038/s41375-019-0580-z

N/A

0.716DataRank · unranked

117 citations

Katharina E. Hayer, Ammar S. Naqvi, Sisi Zheng, Scarlett Y. Yang, Derek Oldridge +14 more

Disrupting upstream translation in mRNAs is associated with human disease

Nature Communications(2021)10.1038/s41467-021-21812-1

N/A

0.641DataRank · unranked

71 citations

Joseph Park, Andrew Kromer, Aris Baras, Daniel J. Rader, Marylyn D. Ritchie +3 more

Genomic profiling of human vascular cells identifies TWIST1 as a causal gene for common vascular diseases

PLoS Genetics(2020)10.1371/journal.pgen.1008538

N/A

0.619DataRank · unranked

61 citations

Marie Guerraty, Robert Wirka, H. Shanker Rao, Milos Pjanic, Scott Norton +17 more

High-throughput mutagenesis identifies mutations and RNA-binding proteins controlling CD19 splicing and CART-19 therapy resistance

Nature Communications(2022)10.1038/s41467-022-31818-y

N/A

0.614DataRank · unranked

59 citations

Laura Schulz, Mihaela Enculescu, Claudia Paret, Bea Spiekermann, Mathieu Quesnel-Vallières +16 more

Alternative splicing of its 5′-UTR limits CD20 mRNA translation and enables resistance to CD20-directed immunotherapies

Blood(2023)10.1182/blood.2023020400

N/A

0.581DataRank · unranked

47 citations

Luca Paruzzo, Katharina E. Hayer, Carolin Schmidt, Manuel Torres-Diz, Feng Xu +19 more

Identifying common transcriptome signatures of cancer by interpreting deep learning models

Genome biology(2022)10.1186/s13059-022-02681-3

N/A

0.553DataRank · unranked

39 citations

Mathieu Quesnel-Vallières, David Wang, Andrei Thomas‐Tikhonenko, Kristen W. Lynch, Yoseph Barash +1 more

MAJIQlopedia: an encyclopedia of RNA splicing variations in human tissues and cancer

Nucleic Acids Research(2023)10.1093/nar/gkad1043

Top 36%

0.548DataRank

Top 36%20 citations

San Jewell, Kristen W. Lynch, Andrei Thomas‐Tikhonenko, Yoseph Barash, Mathieu Quesnel-Vallières

The germ cell-specific RNA binding protein RBM46 is essential for spermatogonial differentiation in mice

PLoS Genetics(2022)10.1371/journal.pgen.1010416

N/A

0.464DataRank · unranked

21 citations

Taylor A. Johnson, Sungkyoung Lee, Matthew J. Sears, Yang Fang, Mathieu Quesnel-Vallières +9 more

RNA-Binding Proteins PCBP1 and PCBP2 Are Critical Determinants of Murine Erythropoiesis

Molecular and Cellular Biology(2021)10.1128/mcb.00668-20

N/A

0.449DataRank · unranked

19 citations

Anupama Jha, Jesse Humenik, Louis R. Ghanem, Andrew Kromer, Christopher Duncan-Lewis +5 more

Contrasting and combining transcriptome complexity captured by short and long RNA sequencing reads

Genome Research(2024)10.1101/gr.278659.123

N/A

0.442DataRank · unranked

18 citations

San Jewell, Andrei Thomas‐Tikhonenko, Yoseph Barash, Seong Woo Han

An Alternatively Spliced Gain-of-Function NT5C2 Isoform Contributes to Chemoresistance in Acute Lymphoblastic Leukemia

Cancer Research(2024)10.1158/0008-5472.can-23-3804

N/A

0.428DataRank · unranked

10 citations

Clara Reglero, Catherine D. Falkenstein, Annette Castro, Katharina E. Hayer, Caleb M. Radens +9 more

FBXW7β isoform drives transcriptional activation of the proinflammatory TNF cluster in human pro-B cells

Blood Advances(2022)10.1182/bloodadvances.2022007910

N/A

0.345DataRank · unranked

9 citations

Katharina E. Hayer, Hossein Fazelinia, Lynn A. Spruce, Mukta Asnani, Kathryn L. Black +6 more

CAMPAREE: a robust and configurable RNA expression simulator

BMC Genomics(2021)10.1186/s12864-021-07934-2

N/A

0.331DataRank · unranked

7 citations

Thomas G. Brooks, Dimitra Sarantopoulou, Soumyashant Nayak, Cris Lawrence, Antonijo Mrčela +6 more

RNA splicing analysis using heterogeneous and large RNA-seq datasets

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.03.467086

N/A

0.330DataRank · unranked

8 citations

Joseph K. Aicher, Paul Jewell, Matthew R. Gazzara, Caleb M. Radens, Anupama Jha +6 more

Machine learning-optimized targeted detection of alternative splicing

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.20.614162

N/A

0.269DataRank · unranked

5 citations

Nathaniel Islas, San Jewell, Anupama Jha, Caleb M. Radens, Jeffrey A. Pleiss +4 more

NRCAM variant defined by microexon skipping is a targetable cell surface proteoform in high-grade gliomas

Cell Reports(2025)10.1016/j.celrep.2025.116099

N/A

0.269DataRank · unranked

5 citations

Ammar S. Naqvi, Makenna Higgins, Jia‐Geng Liu, Kyra Harvey, Julien Jarroux +25 more

The exon junction complex coordinates the cotranscriptional inclusion of blocks of neighboring exons

Genes & Development(2025)10.1101/gad.353081.125

N/A

0.241DataRank · unranked

4 citations

Jackson M. Gordon, Matthew R. Gazzara, Chuan-Tien Hung, Benhur Lee, Yoseph Barash +2 more

Contrasting and Combining Transcriptome Complexity Captured by Short and Long RNA Sequencing Reads

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.21.568046

N/A

0.208DataRank · unranked

3 citations

San Jewell, Andrei Thomas‐Tikhonenko, Yoseph Barash, Seong Woo Han

Disrupting upstream translation in mRNAs leads to loss-of-function associated with human disease

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.09.287912

N/A

0.208DataRank · unranked

3 citations

Joseph Park, Andrew Kromer, Daniel J. Rader, Marylyn D. Ritchie, Louis R. Ghanem +2 more

PolyA_DB v4: systematic polyA site identification and isoform annotation in human and mouse genomes using 3′ end and long-read sequencing data

Nucleic Acids Research(2025)10.1093/nar/gkaf1212

Top 65%

0.208DataRank

Top 65%3 citations

Wei Chun Chen, Luyang Wang, San Jewell, Ayna Mammedova, Seong Woo Han +4 more

Machine learning-optimized targeted detection of alternative splicing

Nucleic Acids Research(2024)10.1093/nar/gkae1260

N/A

0.208DataRank · unranked

3 citations

Nathaniel Islas, San Jewell, Di Wu, Anupama Jha, Caleb M. Radens +5 more

G4mer: An RNA language model for transcriptome-wide identification of G-quadruplexes and disease variants from population-scale genetic data

Nature Communications(2025)10.1038/s41467-025-65020-7

N/A

0.104DataRank · unranked

1 citations

Danielle Gutman, Nathaniel Islas, Bryan B. Guzmán, Alli Jimenez, San Jewell +5 more

Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data

RNA(2023)10.1261/rna.079849.123

N/A

0DataRank · unranked

17 citations

Dominik Bürri, Matthew R. Gazzara, Christina Herrmann, Weronika Danecka, Christina M. Fitzsimmons +21 more

A Bayesian model for unsupervised detection of RNA splicing based subtypes in cancers

Nature Communications(2023)10.1038/s41467-022-35369-0

N/A

0DataRank · unranked

9 citations

Mathieu Quesnel-Vallières, San Jewell, Moein Elzubeir, Kristen W. Lynch, Andrei Thomas‐Tikhonenko +2 more

Parkin Deficiency Suppresses Antigen Presentation to Promote Tumor Immune Evasion and Immunotherapy Resistance

Cancer Research(2023)10.1158/0008-5472.can-22-2499

N/A

0DataRank · unranked

7 citations

Nektaria Maria Leli, Hesham Mohei, Silvia Beghi, Osvaldo D. Rivera, Νεκτάριος Κωστόπουλος +14 more

The Tumor Suppressor Adenomatous Polyposis Coli (apc) Is Required for Neural Crest-Dependent Craniofacial Development in Zebrafish

Journal of Developmental Biology(2023)10.3390/jdb11030029

N/A

0DataRank · unranked

3 citations

William David Jones, Mathieu Quesnel-Vallières, Sudhish A. Devadiga, Kristin Lorent, Alexander J. Valvezan +7 more

Alternative splicing of its 5’-UTR limits CD20 mRNA translation and enables resistance to CD20-directed immunotherapies

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.19.529123

N/A

0DataRank · unranked

5 citations

Luca Paruzzo, Katharina E. Hayer, Carolin Schmidt, Manuel Torres-Diz, Feng Xu +19 more

The global Protein-RNA interaction map of ESRP1 defines a post-transcriptional program that is essential for epithelial cell function

iScience(2022)10.1016/j.isci.2022.105205

N/A

0DataRank · unranked

14 citations

Jae Yeon Hwang, Mathieu Quesnel-Vallières, Matthew J. Sears, Yuequin Yang, Peter Stoilov +5 more

An Alternatively Spliced Gain-of-Function NT5C2 Isoform Contributes to Chemoresistance in Acute Lymphoblastic Leukemia

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.14.557413

N/A

0DataRank · unranked

0 citations

Clara Reglero, Catherine D. Falkenstein, Annette Castro, Katharina E. Hayer, Caleb M. Radens +9 more

The Global Protein-RNA Interaction map of Epithelial Splicing Regulatory Protein 1 defines a post-transcriptional program that is essential for epithelial cell function

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.18.444719

N/A

0DataRank · unranked

0 citations

Jae Yeon Hwang, Mathieu Quesnel- Vallières, Matthew J. Sears, Yuequin Yang, Peter Stoilov +4 more

Identifying common transcriptome signatures of cancer by interpreting deep learning models

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.11.467790

N/A

0DataRank · unranked

3 citations

Mathieu Quesnel-Vallières, Andrei Thomas‐Tikhonenko, Kristen W. Lynch, Yoseph Barash, Anupama Jha

Direct long-read RNA sequencing identifies a subset of questionable exitrons likely arising from reverse transcription artifacts

Genome biology(2021)10.1186/s13059-021-02411-1

N/A

0DataRank · unranked

40 citations

Manuel Torres-Diz, Mariela Cortés-López, Katharina E. Hayer, Mukta Asnani, Sarah K. Tasian +6 more

Modulation of CD22 Protein Expression in Childhood Leukemia by Pervasive Splicing Aberrations: Implications for CD22-Directed Immunotherapies

Blood Cancer Discovery(2021)10.1158/2643-3230.bcd-21-0087

N/A

0DataRank · unranked

63 citations

Elisabeth Gillespie, Ammar S. Naqvi, Katharina E. Hayer, Zhiwei Ang, Manuel Torres-Diz +17 more

A Deep Dive into Statistical Modeling of RNA Splicing QTLs Reveals New Variants that Explain Neurodegenerative Disease

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.01.610696

N/A

0DataRank · unranked

0 citations

Matthew R. Gazzara, San Jewell, Benjamin D Wales-McGrath, Christopher Devlin Brown, Peter S. Choi +2 more

Alternative splicing redefines landscape of commonly mutated genes in acute myeloid leukemia

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.21.107557

N/A

0DataRank · unranked

4 citations

Michael J. Mallory, Mathieu Quesnel-Vallières, D. Schultz, Martin Carroll, Yoseph Barash +3 more

Rapid and scalable profiling of nascent RNA with fastGRO

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.24.916015

N/A

0DataRank · unranked

8 citations

Connor Hill, Mathieu Quesnel-Vallières, Yoseph Barash, Alessandro Gardini, Elisa Barbieri

Integrative analysis of RNA binding proteins identifies DDX55 as a novel regulator of 3’UTR isoform diversity

Genome biology(2025)10.1186/s13059-025-03852-8

N/A

0DataRank · unranked

1 citations

Timothy Cater, Michael J. Mallory, Yoseph Barash, Kristen W. Lynch, Matthew R. Gazzara

A deep dive into statistical modeling of RNA splicing QTLs reveals variants that explain neurodegenerative disease

The American Journal of Human Genetics(2025)10.1016/j.ajhg.2025.10.012

N/A

0DataRank · unranked

1 citations

Matthew R. Gazzara, San Jewell, Benjamin D Wales-McGrath, Kevin Yang, Christopher D. Brown +3 more

Integrative analysis reveals RNA G-quadruplexes in UTRs are selectively constrained and enriched for functional associations

Nature Communications(2020)10.1038/s41467-020-14404-y

N/A

0DataRank · unranked

101 citations

Louis R. Ghanem, Yoseph Barash, David S.M. Lee

Rapid and Scalable Profiling of Nascent RNA with fastGRO

Cell Reports(2020)10.1016/j.celrep.2020.108373

N/A

0DataRank · unranked

34 citations

Connor Hill, Mathieu Quesnel-Vallières, Avery Zucco, Yoseph Barash, Alessandro Gardini +1 more

Generative modeling for RNA splicing prediction and design

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.20.633986

N/A

0DataRank · unranked

2 citations

Natalie Maus, Anupama Jha, Kevin Yang, Benjamin D Wales-McGrath, San Jewell +5 more

MAJIQ-CLIN: A novel tool for the identification of Mendelian disease-causing variants from RNA-Seq data

medRxiv(2025)10.1101/2025.01.30.25321185

N/A

0DataRank · unranked

0 citations

Dina Issakova, Barry Slaff, San Jewell, Nicholas F. Lahens, Gregory R. Grant +7 more

Integrative analysis of RNA binding proteins identifies DDX55 as a novel regulator of 3’UTR isoform diversity

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.06.652471

N/A

0DataRank · unranked

0 citations

Timothy Cater, Michael J. Mallory, Yoseph Barash, Kristen W. Lynch, Matthew R. Gazzara

Enhanced Integrated Gradients: improving interpretability of deep learning models using splicing codes as a case study

Genome biology(2020)10.1186/s13059-020-02055-7

N/A

0DataRank · unranked

93 citations

Joseph K. Aicher, Matthew R. Gazzara, Deependra Singh, Yoseph Barash, Anupama Jha

Yoseph Barash

Indexed papers

Top data-sharing exemplar

Papers