Aviv Regev

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

12.9Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Nature Medicine(2020)10.1038/s41591-020-0844-1

Top 4%

5.6DataRank

Top 4%819 citations

Caroline B. M. Porter, Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro +45 more

Papers

Driven by 40 papers — median percentile 90. Top paper: “SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues”.

SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues

Cell(2020)10.1016/j.cell.2020.04.035

N/A

14.1DataRank · unranked

2492 citations

Samuel J. Allon, Sarah K. Nyquist, Ian Mbano, Vincent N. Miao, Constantine N. Tzouanas +92 more

Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA

Cell(2014)10.1016/j.cell.2014.08.028

N/A

12.5DataRank · unranked

1026 citations

Douglas A. Bernstein, Maxwell R. Mumbach, Marko Jovanovic, Rebecca H. Herbst, Brian X. León-Ricardo +7 more

Hyperactivation of sympathetic nerves drives depletion of melanocyte stem cells

Nature(2020)10.1038/s41586-020-1935-3

N/A

7.5DataRank · unranked

295 citations

Sai Ma, Inbal Rachmin, Megan He, Pankaj Baral, Sekyu Choi +12 more

The neutrotime transcriptional signature defines a single continuum of neutrophils across biological compartments

Nature Communications(2021)10.1038/s41467-021-22973-9

N/A

7.1DataRank · unranked

347 citations

Felix A. Radtke, Pierre Cunin, Giuseppina Stifano, Anaïs Levescot, Brinda Vijaykumar +85 more

Multimodal pooled Perturb-CITE-seq screens in patient models define mechanisms of cancer immune evasion

Nature Genetics(2021)10.1038/s41588-021-00779-1

N/A

6.5DataRank · unranked

271 citations

Johannes C. Melms, Pratiksha I. Thakore, Kathryn Geiger-Schuller, Patricia Ho, Adrienne Luoma +17 more

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Nature Medicine(2020)10.1038/s41591-020-0844-1

Top 4%

5.6DataRank

Top 4%819 citations

Caroline B. M. Porter, Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro +45 more

Cell type ontologies of the Human Cell Atlas

Nature Cell Biology(2021)10.1038/s41556-021-00787-7

Top 5%

4.6DataRank

Top 5%128 citations

Chuan Xu, Maria Keays, Adam P. Levine, Peter V. Kharchenko, Aviv Regev +3 more

TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omics

Nature Biotechnology(2023)10.1038/s41587-023-01657-3

N/A

2.0DataRank · unranked

86 citations

Noa Moriel, Inbal Avraham‐Davidi, Evan Murray, Jan Watter, Fei Chen +5 more

A microRNA expression and regulatory element activity atlas of the mouse immune system

Nature Immunology(2021)10.1038/s41590-021-00944-y

Top 15%

1.4DataRank

Top 15%38 citations

Aleksandra Wroblewska, Maxime Dhainaut, Hideyuki Yoshida, Jonathan M. Shaffer, Anela Bektesevic +91 more

Single-nucleus cross-tissue molecular reference maps to decipher disease gene function

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.19.452954

Top 16%

1.3DataRank

Top 16%27 citations

Eugene Drokhlyansky, Shankara Anand, Ayshwarya Subramanian, Evgenij Fiskin, Michal Slyper +19 more

Neuropeptide signalling orchestrates T cell differentiation

Nature(2024)10.1038/s41586-024-08049-w

N/A

1.2DataRank · unranked

64 citations

Lin-Yu Sun, Martin W. LaFleur, Linglin Huang, Conner Lambden, Pratiksha I. Thakore +20 more

Glioblastoma Cortical Organoids Recapitulate Cell-State Heterogeneity and Intercellular Transfer

Cancer Discovery(2024)10.1158/2159-8290.cd-23-1336

N/A

0.940DataRank · unranked

42 citations

Rony Chanoch-Myers, Rafaela Sartore, Bruna Paulsen, Simon Gritsch, Hannah Weisman +9 more

BACH2 regulates diversification of regulatory and proinflammatory chromatin states in TH17 cells

Nature Immunology(2024)10.1038/s41590-024-01901-1

N/A

0.863DataRank · unranked

40 citations

Alexandra Schnell, Linglin Huang, Maryann Zhao, Yu Hou, Elena Christian +16 more

How to build the virtual cell with artificial intelligence: Priorities and opportunities

Cell(2024)10.1016/j.cell.2024.11.015

N/A

0.861DataRank · unranked

310 citations

Yusuf Roohani, Yanay Rosen, Ankit Gupta, Xikun Zhang, Marcel Roed +37 more

Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma

Cancer Cell(2020)10.1016/j.ccell.2020.06.006

N/A

0.820DataRank · unranked

236 citations

Vinay K. Kartha, Sai Ma, Kevin Meli, Isabella Del Priore, Caleb A. Lareau +13 more

Smarca4 Inactivation Promotes Lineage-Specific Transformation and Early Metastatic Features in the Lung

Cancer Discovery(2021)10.1158/2159-8290.cd-21-0248

N/A

0.714DataRank · unranked

116 citations

Sai Ma, Lindsay M. LaFave, Arjun Bhutkar, Manyuan Liu, Lydia P. DeAngelo +18 more

Heterochronic parabiosis reprograms the mouse brain transcriptome by shifting aging signatures in multiple cell types

Nature Aging(2023)10.1038/s43587-023-00373-6

N/A

0.641DataRank · unranked

71 citations

Kristina M. Holton, Richard M. Giadone, Ceren Ozek, Monika Saxena, Samara Santiago +15 more

Single Cell, Single Nucleus and Spatial RNA Sequencing of the Human Liver Identifies Hepatic Stellate Cell and Cholangiocyte Heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.27.436882

N/A

0.631DataRank · unranked

15 citations

Jawairia Atif, Jeff C. Liu, Cátia T. Perciani, Xue‐Zhong Ma, Cornelia Thoeni +15 more

Mostly natural sequencing-by-synthesis for scRNA-seq using Ultima sequencing

Nature Biotechnology(2022)10.1038/s41587-022-01452-6

N/A

0.598DataRank · unranked

53 citations

Gila Lithwick‐Yanai, Xian Adiconis, Florian C. Oberstrass, Nika Iremadze, Kathryn Geiger-Schuller +9 more

A deep lung cell atlas reveals cytokine-mediated lineage switching of a rare cell progenitor of the human airway epithelium

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.28.569028

N/A

0.484DataRank · unranked

11 citations

Isha Monga, Brian Lin, Viral S. Shah, Michal Slyper, Bruno Giotti +18 more

Simultaneous single cell measurements of intranuclear proteins and gene expression

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.18.427139

N/A

0.483DataRank · unranked

24 citations

Christopher N. Parkhurst, Emma M. Magee, Devan R. Phillips, Ehsan Habibi, Fei Chen +5 more

Multi-modal pooled Perturb-CITE-Seq screens in patient models define novel mechanisms of cancer immune evasion

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.01.267211

N/A

0.375DataRank · unranked

5 citations

Johannes C. Melms, Pratiksha I. Thakore, Kathryn R. Geiger-Schuller, Patricia Ho, Adrienne Luoma +15 more

Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics

eLife(2025)10.7554/elife.104815

N/A

0.104DataRank · unranked

1 citations

Simon Mages, Johanna Klughammer, Noa Moriel, Shinya Imada, Matan Hofree +22 more

MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.15.435473

N/A

0DataRank · unranked

43 citations

Artem Sokolov, Clarence Yapp, Jeremy L. Muhlich, Joshua M. Hess, Jia‐Ren Lin +16 more

SlideCNA: Spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.25.517982

N/A

0DataRank · unranked

0 citations

Åsa Segerstolpe, Michal Slyper, Julia Waldman, Evan Murray, Ofir Cohen +13 more

MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging

Nature Methods(2021)10.1038/s41592-021-01308-y

N/A

0DataRank · unranked

245 citations

Artem Sokolov, Clarence Yapp, Yu‐An Chen, Jeremy L. Muhlich, Joshua M. Hess +22 more

Metabolic modeling of single Th17 cells reveals regulators of autoimmunity

Cell(2021)10.1016/j.cell.2021.05.045

N/A

0DataRank · unranked

510 citations

Chao Wang, Johannes Fessler, David DeTomaso, Julián Ávila-Pacheco, James J. Kaminski +21 more

Emergence of division of labor in tissues through cell interactions and spatial cues

Cell Reports(2023)10.1016/j.celrep.2023.112412

N/A

0DataRank · unranked

55 citations

Noa Moriel, Aleksandrina Goeva, Inbal Avraham‐Davidi, Simon Mages, Taylor Adams +6 more

Targeted in silico characterization of fusion transcripts in tumor and normal tissues via FusionInspector

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100467

N/A

0DataRank · unranked

31 citations

Alexander Dobin, Mahmoud Ghandi, Anne Van Arsdale, Timothy L. Tickle, James Robinson +4 more

Inference of single cell profiles from histology stains with the Single Cell omics from Histology Analysis Framework (SCHAF)

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.21.533680

N/A

0DataRank · unranked

36 citations

Xingjian Chen, Eeshit Dhaval Vaishnav, Koseki J. Kobayashi-Kirschvink, Metamia Ciampricotti, Ke Zhang +30 more

ECLIPSER: identifying causal cell types and genes for complex traits through single cell enrichment of e/sQTL-mapped genes in GWAS loci

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.24.469720

N/A

0DataRank · unranked

12 citations

Jiali Wang, Gökçen Eraslan, Shankara Anand, Andrew R. Hamel, Brian Cole +5 more

Evaluation and optimization of sequence-based gene regulatory deep learning models

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.26.538471

N/A

0DataRank · unranked

9 citations

Daria Nogina, Dmitry Penzar, Dohoon Lee, Danyeong Lee, N. S. KIM +20 more

Using viral load and epidemic dynamics to optimize pooled testing in resource constrained settings

medRxiv(2020)10.1101/2020.05.01.20086801

N/A

0DataRank · unranked

23 citations

James A. Hay, Brendan Blumenstiel, Maegan Harden, Michelle Cipicchio, Jon Bezney +8 more

Purifying Selection against Pathogenic Mitochondrial DNA in Human T Cells

New England Journal of Medicine(2020)10.1056/nejmoa2001265

N/A

0DataRank · unranked

100 citations

Caleb A. Lareau, Leif S. Ludwig, Amel Karaa, Vijay G. Sankaran, Aviv Regev +2 more

Endogenous Glucocorticoid Signaling Regulates CD8+ T Cell Differentiation and Development of Dysfunction in the Tumor Microenvironment

Immunity(2020)10.1016/j.immuni.2020.08.005

N/A

0DataRank · unranked

230 citations

Asaf Madi, Huiyuan Zhang, Max Klapholz, Giulia Escobar, Shai Dulberg +15 more

Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing

Cell Reports(2020)10.1016/j.celrep.2020.108566

N/A

0DataRank · unranked

206 citations

Hana Shapiro, Christina Tsiobikas, Laura M. Selfors, Huidong Chen, Jennifer M. Rosenbluth +10 more

Pan-cancer mapping of single CD8+ T cell profiles reveals a TCF1:CXCR6 axis regulating CD28 co-stimulation and anti-tumor immunity

Cell Reports Medicine(2024)10.1016/j.xcrm.2024.101640

N/A

0DataRank · unranked

21 citations

Livnat Jerby, Giulia Escobar, S. Harsha Krovi, Davide Mangani, Gitanjali Dandekar +9 more

LAT encodes T cell activation pathway balance

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.26.609683

N/A

0DataRank · unranked

2 citations

Tyler T. Dao, Amelia V. Schueppert, Aviv Regev, Alex K. Shalek, Adam J. Rubin

Biomni: A General-Purpose Biomedical AI Agent

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.30.656746

N/A

0DataRank · unranked

100 citations

Serena Zhang, Hanchen Wang, Yuanhao Qu, Yingzhou Lu, Yusuf Roohani +18 more

Identifying disease-critical cell types and cellular processes across the human body by integration of single-cell profiles and human genetics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.19.436212

N/A

0DataRank · unranked

39 citations

Kushal K. Dey, Daniel T. Montoro, Rahul Mohan, Steven Gazal, Jesse M. Engreitz +4 more

Aviv Regev

Indexed papers

Top data-sharing exemplar

Papers