Valentina Snetkova

Lawrence Berkeley National Laboratory

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

60.3Author DataRank

Indexed papers

12in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 12 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Papers

Driven by 61 papers — median percentile 97. Top paper: “Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project”.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Correction: Corrigendum: Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases

Scientific Reports(2016)10.1038/srep19384

N/A

10.4DataRank · unranked

722 citations

Tao Huang, Francesca Petralia, Quan Long, Bin Zhang, Carmen Argmann +129 more

Genetic effects on gene expression across human tissues

Nature(2017)10.1038/nature24277

Top 1%

10.1DataRank

Top 1%4706 citations

Barbara E. Engelhardt, Stephen B. Montgomery, Sara Mostafavi, Ayellet V. Segrè, Hailei Zhang +227 more

A comparative encyclopedia of DNA elements in the mouse genome

Nature(2014)10.1038/nature13992

Top 2%

7.9DataRank

Top 2%1946 citations

Yong Cheng, Alessandra Breschi, Jost Vielmetter, Weisheng Wu, Tyrone Ryba +150 more

Phased Whole-Genome Genetic Risk in a Family Quartet Using a Major Allele Reference Sequence

PLoS Genetics(2011)10.1371/journal.pgen.1002280

N/A

7.5DataRank · unranked

148 citations

Rong Chen, Sergio P. Cordero, Kelly E. Ormond, Colleen Caleshu, Konrad J. Karczewski +33 more

Defining functional DNA elements in the human genome

Proceedings of the National Academy of Sciences(2014)10.1073/pnas.1318948111

Top 3%

6.9DataRank

Top 3%755 citations

Valentina Snetkova, Louis Philip Benoit Bouvrette, Anshul Kundaje, Georgi K. Marinov, Lucas D. Ward +29 more

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors

Genome Biology(2012)10.1186/gb-2012-13-9-r48

Top 3%

6.2DataRank

Top 3%269 citations

Chao Cheng, Nitin Bhardwaj, James B Brown, Jing Leng, Anshul Kundaje +7 more

The Genotype-Tissue Expression (GTEx) project

Nature Genetics(2013)10.1038/ng.2653

Top 3%

6.0DataRank

Top 3%10097 citations

Mike Salvatore, Rebecca Phillips, Bernadette Mestichelli, Saboor Shad, Richard Hasz +144 more

Transcriptomic signatures across human tissues identify functional rare genetic variation

Science(2020)10.1126/science.aaz5900

N/A

5.0DataRank · unranked

166 citations

Benjamin J. Strober, Jonah Einson, Nathan S. Abell, François Aguet, Alvaro N. Barbeira +183 more

Systematic functional regulatory assessment of disease-associated variants

Proceedings of the National Academy of Sciences(2013)10.1073/pnas.1219099110

N/A

3.7DataRank · unranked

95 citations

Joel T. Dudley, Kimberly R. Kukurba, Rong Chen, Atul Janardhan Butte, Stephen B. Montgomery +2 more

A vast resource of allelic expression data spanning human tissues

Genome Biology(2020)10.1186/s13059-020-02122-z

Top 8%

2.7DataRank

Top 8%147 citations

François Aguet, Pejman Mohammadi, Kristin G. Ardlie, Anthony Philippakis, Leanne Haggerty +159 more

Integrative multi-omics profiling in human decedents receiving pig heart xenografts

Nature Medicine(2024)10.1038/s41591-024-02972-1

N/A

2.1DataRank · unranked

56 citations

Brian D. Piening, Maedeh Mohebnasab, Bo Xia, Chenchen Zhu, Jeffrey Stern +54 more

A genome-wide association study identifies only two ancestry specific variants associated with spontaneous preterm birth

Scientific Reports(2018)10.1038/s41598-017-18246-5

N/A

1.6DataRank · unranked

50 citations

Jonathan Toung, Dexter Hadley, Ronald J. Wong, Kazumichi Fujioka, Jason Reuter +32 more

Single-cell multi-cohort dissection of the schizophrenia transcriptome

Science(2024)10.1126/science.adg5136

N/A

1.3DataRank · unranked

125 citations

Shahin Mohammadi, José Dávila-Velderrain, Sivan Subburaju, Daniel Reed Tso, Makayla Hourihan +196 more

A Roadmap for the Human Gut Cell Atlas

Nature Reviews Gastroenterology & Hepatology(2023)10.1038/s41575-023-00784-1

Top 17%

1.2DataRank

Top 17%51 citations

Kylie R. James, Mandeep Kaur, Sebastian Pott, Zhixin Li, Albert Burger +37 more

Annotation of functional variation in personal genomes using RegulomeDB

Genome Research(2012)10.1101/gr.137323.112

N/A

1.2DataRank · unranked

2839 citations

Eurie L. Hong, Manoj Hariharan, Yong Cheng, Marc A. Schaub, Madhura Kadaba +7 more

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Genome Research(2012)10.1101/gr.136184.111

N/A

1.2DataRank · unranked

2212 citations

Georgi K. Marinov, Anshul Kundaje, Yanxiao Zhang, Florencia Pauli, Serafim Batzoglou +46 more

Massively parallel characterization of regulatory elements in the developing human cortex

Science(2024)10.1126/science.adh0559

N/A

1.2DataRank · unranked

61 citations

Sean Whalen, Marilyn Steyert, Ryan Ziffra, Pawel F. Przytycki, Fumitaka Inoue +197 more

Architecture of the human regulatory network derived from ENCODE data

Nature(2012)10.1038/nature11245

N/A

1.1DataRank · unranked

1548 citations

Anshul Kundaje, Manoj Hariharan, Stephen G. Landt, Koon-Kiu Yan, Chao Cheng +58 more

Personal Omics Profiling Reveals Dynamic Molecular and Medical Phenotypes

Cell(2012)10.1016/j.cell.2012.02.009

N/A

1.1DataRank · unranked

1301 citations

George I. Mias, Jennifer Li-Pook-Than, Lihua Jiang, Rong Chen, Elana Miriami +42 more

Biological research and self-driving labs in deep space supported by artificial intelligence

Nature Machine Intelligence(2023)10.1038/s42256-023-00618-4

N/A

1.1DataRank · unranked

48 citations

Ryan T. Scott, Jason H. Yang, Héctor García Martín, Daniel C. Berrios, Jaden J. A. Hastings +54 more

Linking disease associations with regulatory information in the human genome

Genome Research(2012)10.1101/gr.136127.111

N/A

0.996DataRank · unranked

765 citations

Beatrice Borsari, Anshul Kundaje, Serafim Batzoglou, Valentina Snetkova, Marc A. Schaub

Performance comparison of exome DNA sequencing technologies

Nature Biotechnology(2011)10.1038/nbt.1975

N/A

0.941DataRank · unranked

528 citations

Rui Chen, Hugo Y. K. Lam, Konrad J. Karczewski, Rong Chen, Ghia Euskirchen +3 more

A longitudinal big data approach for precision health

Nature Medicine(2019)10.1038/s41591-019-0414-6

N/A

0.933DataRank · unranked

501 citations

Kévin Contrepois, Kegan J. Moneghetti, Wenyu Zhou, Tejaswini Mishra, Samson Mataraso +27 more

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

Genome Research(2012)10.1101/gr.134445.111

N/A

0.931DataRank · unranked

496 citations

David G. Knowles, Todd A. Johnson, Qi Dai, Sudipto Chakrabortty, Sarah Djebali +7 more

Clinical Interpretation and Implications of Whole-Genome Sequencing

JAMA(2014)10.1001/jama.2014.1717

N/A

0.919DataRank · unranked

456 citations

Megan E. Grove, Cuiping Pan, Benjamin A. Goldstein, Jonathan A. Bernstein, Hassan Chaib +26 more

Extensive Variation in Chromatin States Across Humans

Science(2013)10.1126/science.1242510

N/A

0.891DataRank · unranked

378 citations

Sofia Kyriazopoulou-Panagiotopoulou, Mark T. Groudine, Judith B. Zaugg, Anshul Kundaje, Yuling Liu +14 more

AlleleSeq: analysis of allele‐specific expression and binding in a network framework

Molecular Systems Biology(2011)10.1038/msb.2011.54

N/A

0.882DataRank · unranked

358 citations

Alexej Abyzov, Jing Wang, Pedro Alves, Debasish Raha, Nicholas J. Haradhvala +9 more

Effect of predicted protein-truncating genetic variants on the human transcriptome

Science(2015)10.1126/science.1261877

N/A

0.877DataRank · unranked

345 citations

Matti Pirinen, Donald F. Conrad, Monkol Lek, Emily K. Tsang, Konrad J. Karczewski +206 more

Divergence of Transcription Factor Binding Sites Across Related Yeast Species

Science(2007)10.1126/science.1140748

N/A

0.874DataRank · unranked

339 citations

Tara A. Gianoulis, Zhengdong D. Zhang, Gargi Dayama, Joel Rozowsky, Michael R. Seringhaus +6 more

Performance comparison of whole-genome sequencing platforms

Nature Biotechnology(2011)10.1038/nbt.2065

N/A

0.865DataRank · unranked

319 citations

Michael J. Clark, Rui Chen, Rong Chen, Georges Natsoulis, Maeve O'Huallachain +9 more

Mutations in NGLY1 cause an inherited disorder of the endoplasmic reticulum–associated degradation pathway

Genetics in Medicine(2014)10.1038/gim.2014.22

N/A

0.821DataRank · unranked

238 citations

Vandana Shashi, Matthew Bainbridge, Michael J. Gambello, Thomas Bast, Rebecca Crimian +29 more

Comparative analysis of regulatory information and circuits across distant species

Nature(2014)10.1038/nature13668

N/A

0.818DataRank · unranked

232 citations

Carlos L. Araya, Cathleen Brdlik, Philip Cayting, Chao Cheng, Yong Cheng +40 more

Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases

Scientific Reports(2015)10.1038/srep15145

N/A

0.811DataRank · unranked

222 citations

Tao Huang, Francesca Petralia, Quan Long, Bin Zhang, Carmen Argmann +128 more

Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease

Cell(2021)10.1016/j.cell.2021.03.050

N/A

0.804DataRank · unranked

212 citations

Daniel C. Nachun, Nicole M. Ferraro, Michael J. Gloudemans, Abhiram S. Rao, Craig Smail +168 more

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

Genome Research(2012)10.1101/gr.136366.111

N/A

0.796DataRank · unranked

201 citations

Sofia Kyriazopoulou-Panagiotopoulou, Max Libbrecht, Cheryl L. Smith, Debasish Raha, Elliott E. Winters +6 more

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

Genome Research(2012)10.1101/gr.136838.111

N/A

0.779DataRank · unranked

179 citations

Roger Alexander, Renqiang Min, Jing Leng, Kevin Y. Yip, Joel Rozowsky +17 more

Erratum: Corrigendum: Performance comparison of whole-genome sequencing platforms

Nature Biotechnology(2012)10.1038/nbt0612-562e

N/A

0.771DataRank · unranked

9 citations

Michael J. Clark, Rui Chen, Rong Chen, Georges Natsoulis, Maeve O'Huallachain +10 more

The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

Genome Biology(2023)10.1186/s13059-023-02915-y

N/A

0.692DataRank · unranked

17 citations

Carles B. Adsera, Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang +46 more

Ultraconserved enhancer function does not require perfect sequence conservation

Nature Genetics(2021)10.1038/s41588-021-00812-3

N/A

0.683DataRank · unranked

94 citations

Athéna R. Ypsilanti, Jennifer A. Akiyama, Brandon J. Mannion, Ingrid Plajzer-Frick, Catherine S. Novak +16 more

Increased enhancer–promoter interactions during developmental enhancer activation in mammals

Nature Genetics(2024)10.1038/s41588-024-01681-2

N/A

0.666DataRank · unranked

84 citations

Valentina Snetkova, Grace Bower, Sandra Jacinto, Ben Clock, Atrin Dizehchi +9 more

Increased Enhancer-Promoter Interactions during Developmental Enhancer Activation in Mammals

bioRxiv (Cold Spring Harbor Laboratory)10.1101/2022.11.18.516017

N/A

0.615DataRank · unranked

11 citations

Valentina Snetkova, Grace Bower, Sandra Jacinto, Benjamin Clock, Atrin Dizehchi +9 more

Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer

Cell(2025)10.1016/j.cell.2025.10.043

N/A

0.529DataRank · unranked

33 citations

Tao Liu, Zhen Zhang, Bai Zhang, Vladislav A. Petyuk, Li Chen +55 more

Multi-omics in stress and health research: study designs that will drive the field forward

Stress(2024)10.1080/10253890.2024.2321610

N/A

0.470DataRank · unranked

22 citations

Jeffrey Gassen, Shahar Lev-Ari, Jenna C. Alley, Sophia Miryam Schüssler-Fiorenza Rose, Valentina Snetkova +2 more

Multi-omics analysis of a pig-to-human decedent kidney xenotransplant

Nature(2025)10.1038/s41586-025-09846-7

N/A

0.437DataRank · unranked

16 citations

Brian D. Piening, Alexa K. Dowdell, Maedeh Mohebnasab, Simon H. Williams, Alexey Stukalov +71 more

Beyond Low Earth Orbit: Biomonitoring, Artificial Intelligence, and Precision Space Health

arXiv (Cornell University)(2021)10.48550/arxiv.2112.12554

N/A

0.330DataRank · unranked

8 citations

Erik L. Antonsen, Lauren M. Sanders, Jaden J. A. Hastings, Seung Min Park, Graham Mackintosh +51 more

Context-Dependent Requirement of Euchromatic Histone Methyltransferase Activity during Reprogramming to Pluripotency

Stem Cell Reports(2020)10.1016/j.stemcr.2020.08.011

N/A

0.330DataRank · unranked

8 citations

Alexander Polyzos, Kaushiki Chatterjee, Ly-Sha Ee, Emily Swanzey, Jorge Morales-Valencia +12 more

Heterogeneity of Diabetes: β-Cells, Phenotypes, and Precision Medicine: Proceedings of an International Symposium of the Canadian Institutes of Health Research’s Institute of Nutrition, Metabolism and Diabetes and the U.S. National Institutes of Health’s National Institute of Diabetes and Digestive and Kidney Diseases

Canadian Journal of Diabetes(2021)10.1016/j.jcjd.2021.09.126

N/A

0.313DataRank · unranked

3 citations

Dana K. Andersen, Guillermo Arreaza-Rubín, Christopher L. Pin, Sheryl Sato, C. Bruce Verchere +56 more

California Stress, Trauma, and Resilience Study (CalSTARS) protocol: A multiomics-based cross-sectional investigation and randomized controlled trial to elucidate the biology of ACEs and test a precision intervention for reducing stress and enhancing resilience

Stress(2024)10.1080/10253890.2024.2401788

N/A

0.269DataRank · unranked

5 citations

Sophia Miryam Schüssler-Fiorenza Rose, Summer Mengelkoch, Daniel P. Moriarity, Jeffrey Gassen, Jenna C. Alley +24 more

Beyond Low Earth Orbit: Biological Research, Artificial Intelligence, and Self-Driving Labs

arXiv (Cornell University)(2021)10.48550/arxiv.2112.12582

N/A

0.241DataRank · unranked

4 citations

Jason H. Yang, Ryan T. Scott, Amina A. Qutub, Héctor García Martín, Daniel C. Berrios +51 more

Integrative Multi-omic Profiling of Two Human Decedents Receiving Pig Heart Xenografts Reveals Strong Perturbations in Early Immune-Cell and Cellular Metabolism Responses

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.05.543406

N/A

0.208DataRank · unranked

3 citations

Brian D. Piening, Bo Xia, Chenchen Zhu, Jeffrey Stern, Weimin Zhang +45 more

The ENCODE Imputation Challenge: A critical assessment of methods for cross-cell type imputation of epigenomic profiles

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.30.502157

N/A

0.190DataRank · unranked

2 citations

Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang, Jen-Chien Chang +40 more

Unlocking the secrets of the genome

UNC Libraries(2020)10.17615/aw2c-np04

N/A

0.154DataRank · unranked

1 citations

Laura A. L. Dillon, Grigorios Georgolopoulos, Kristin C. Gunsalus, Steven Henikoff, Gary H. Karpen +10 more

Correction: Corrigendum: Mutations in NGLY1 cause an inherited disorder of the endoplasmic reticulum–associated degradation pathway

Genetics in Medicine(2014)10.1038/gim.2014.61

N/A

0.136DataRank · unranked

1 citations

Vandana Shashi, Matthew N. Bainbridge, Michael J. Gambello, Farah Zahir, Thomas Bast +28 more

Five Year Pediatric Use of a Digital Wearable Fitness Device: Lessons from a Pilot Case Study

medRxiv(2020)10.1101/2020.10.21.20215491

N/A

0.104DataRank · unranked

1 citations

Amir Bahmani, Atul Janardhan Butte, Sara Mostafavi, Valentina Snetkova, Syzygy Butte +1 more

Additional file 2: of Achieving high-sensitivity for clinical applications using augmented exome sequencing

Figshare(2015)10.6084/m9.figshare.c.3641885_d11

Top 100%

0DataRank

Top 100%0 citations

Jason Harris, Nan Leng, Gábor Bartha, Deanna M. Church, Shujun Luo +20 more

Publisher Correction: The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

Genome Biology(2025)10.1186/s13059-025-03494-w

N/A

0DataRank · unranked

0 citations

Carles B. Adsera, Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang +45 more

Additional file 8: of Achieving high-sensitivity for clinical applications using augmented exome sequencing

Figshare(2015)10.6084/m9.figshare.c.3641885_d12

Top 100%

0DataRank

Top 100%0 citations

Jason Harris, Nan Leng, Gábor Bartha, Deanna M. Church, Shujun Luo +20 more

cellSTAAR: incorporating single-cell-sequencing-based functional data to boost power in rare variant association testing of noncoding regions

Nature Methods(2025)10.1038/s41592-025-02919-5

N/A

0DataRank · unranked

0 citations

Yi Zhang, Xihao Li, Margaret Sunitha Selvaraj, Zilin Li, Hufeng Zhou +544 more

Additional file 9: of Achieving high-sensitivity for clinical applications using augmented exome sequencing

Figshare(2015)10.6084/m9.figshare.c.3641885_d7

Top 100%

0DataRank

Top 100%0 citations

Jason Harris, Nan Leng, Gábor Bartha, Deanna M. Church, Shujun Luo +20 more

Valentina Snetkova

Indexed papers

Top data-sharing exemplar

Papers