🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Julie C. Dunning Hotopp

University of Maryland, Baltimore

ORCID: 0000-0003-3862-986X

Also affiliated with University of Maryland Medical Center

VeterinaryMedicineAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile
1.4Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Nearly Complete Genome Sequence of Brugia malayi Strain FR3

Microbiology Resource Announcements(2020)10.1128/mra.00154-20
Top 29%
0.699DataRank
Top 29%21 citations

Jeremy M. Foster, Michael Paulini, Alexandra Grote, John Mattick, Yu-Chih Tsai +15 more

Papers

Driven by 23 papers — median percentile 50. Top paper: “Sex chromosome evolution in parasitic nematodes of humans”.

Sex chromosome evolution in parasitic nematodes of humans

Nature Communications(2020)10.1038/s41467-020-15654-6
N/A
1.6DataRank · unranked
52 citations

Alexandra Grote, John Mattick, Alan Tracey, Yu‐Chih Tsai, Matthew Chung +18 more

Comparative Analysis of Genome of Ehrlichia sp. HF, a Model Bacterium to Study Fatal Human Ehrlichiosis

BMC Genomics(2021)10.1186/s12864-020-07309-z
N/A
1.0DataRank · unranked
24 citations

Qingming Xiong, Matthew Chung, Sean C. Daugherty, Sushma Nagaraj, Naomi Sengamalay +8 more

Nearly Complete Genome Sequence of Brugia malayi Strain FR3

Microbiology Resource Announcements(2020)10.1128/mra.00154-20
Top 29%
0.699DataRank
Top 29%21 citations

Jeremy M. Foster, Michael Paulini, Alexandra Grote, John Mattick, Yu-Chih Tsai +15 more

Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential

Genome Medicine(2020)10.1186/s13073-019-0708-9
N/A
0.673DataRank · unranked
88 citations

Elliott F. Drábek, Ankit Dwivedi, Emily M. Stucke, Jonathan Crabtree, Antoine Dara +29 more

Complete Genome Sequence of w Bp, the Wolbachia Endosymbiont of Brugia pahangi FR3

Microbiology Resource Announcements(2020)10.1128/mra.00480-20
Top 50%
0.353DataRank
Top 50%8 citations

John Mattick, Silvia Libro, Benjamin C. Sparklin, Matthew Chung, Robin E. Bromley +9 more

Nearly Complete Genome Sequence of Brugia pahangi FR3

Microbiology Resource Announcements(2020)10.1128/mra.00479-20
Top 50%
0.349DataRank
Top 50%6 citations

Silvia Libro, Benjamin C. Sparklin, Matthew Chung, Robin E. Bromley, Suvarna Nadendla +8 more

Same rule, different genes: Blimp1 is a pair-rule gene in the milkweed bug Oncopeltus fasciatus

Science Advances(2024)10.1126/sciadv.adq9045
N/A
0.286DataRank · unranked
5 citations

Matthew Chung, Abigail Heath, Julie C. Dunning Hotopp, Leslie Pick, Katie Reding

Deciphering transcript architectural complexity in bacteria and archaea

mBio(2024)10.1128/mbio.02359-24
N/A
0.104DataRank · unranked
1 citations

Robin E. Bromley, Kaylee J. Watson, Ricky S. Adkins, Christopher I. Holt, Jarrett F. Lebov +5 more

Comparison of long read sequencing technologies in resolving bacteria and fly genomes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.21.213975
N/A
0.104DataRank · unranked
1 citations

Mark T. Gasser, Benjamin C. Sparklin, Jane M. Michalski, Xuechu Zhao, Robin E. Bromley +5 more

Common Analysis of Direct RNA SequencinG CUrrently Leads to Misidentification of 5-Methylcytosine Modifications at GCU Motifs

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.03.539298
N/A
0DataRank · unranked
1 citations

Robin E. Bromley, Benjamin C. Sparklin, Mark T. Gasser, Tamanash Bhattacharya, Jarrett F. Lebov +10 more

Updated annotation and meta-analysis of Brugia malayi transcriptomics data reveals consistent transcriptional profiles across time and space with some study-specific differences in adult female worm transcriptional profiles

PLoS neglected tropical diseases(2024)10.1371/journal.pntd.0012511
N/A
0DataRank · unranked
1 citations

Julie C. Dunning Hotopp, Christopher I. Holt

Deciphering Bacterial and Archaeal Transcriptional Dark Matter and Its Architectural Complexity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.02.587803
N/A
0DataRank · unranked
0 citations

Robin E. Bromley, Kaylee J. Watson, Ricky S. Adkins, Christopher I. Holt, Jarrett F. Lebov +5 more

Duplexed direct RNA sequencing protocol using polyadenylation and polyuridylation

Microbiology Resource Announcements(2025)10.1128/mra.01041-24
N/A
0DataRank · unranked
6 citations

Robin E. Bromley, Julie C. Dunning Hotopp, Kaylee J. Watson

Degradation of ribosomal RNA during Plasmodium falciparum gametocytogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.12.637867
N/A
0DataRank · unranked
0 citations

Ritwik Singhal, Robin E. Bromley, Sachie Kanatani, Kaylee J. Watson, Franck Dumetz +7 more

Abundant genetic variation is retained in many laboratory schistosome populations

PLoS Pathogens(2025)10.1371/journal.ppat.1013439
N/A
0DataRank · unranked
0 citations

Roy N. Platt, Robbie Diaz, Madison Morales, Julie C. Dunning Hotopp, Winka Le Clecʼh +3 more

Best Practices for Successfully Writing and Publishing a Genome Announcement in Microbiology Resource Announcements

Microbiology Resource Announcements(2020)10.1128/mra.00763-20
N/A
0DataRank · unranked
3 citations

David A. Baltrus, Vincent M. Bruno, John J. Dennehy, Steven R. Gill, Julia A. Maresca +11 more

Comparison of long-read sequencing technologies in interrogating bacteria and fly genomes

G3 Genes Genomes Genetics(2021)10.1093/g3journal/jkab083
N/A
0DataRank · unranked
58 citations

Mark T. Gasser, Benjamin C. Sparklin, Jane M. Michalski, Carl E. Hjelmen, J. Spencer Johnston +7 more

Evaluation of a high-throughput, cost-effective Illumina library preparation kit

Scientific Reports(2021)10.1038/s41598-021-94911-0
N/A
0DataRank · unranked
22 citations

Jane M. Michalski, Shaoji Cheng, Rayanna S. Patkus, Luke J. Tallon, Lisa Sadzewicz +5 more

X-treme loss of sequence diversity linked to neo-X chromosomes in filarial nematodes

PLoS neglected tropical diseases(2021)10.1371/journal.pntd.0009838
N/A
0DataRank · unranked
4 citations

Silvia Libro, Robin E. Bromley, Wanpen Chaicumpa, Matthew Chung, Darren A. N. Cook +18 more

Pim kinase inhibitor co-treatment decreases alternative non-homologous end-joining DNA repair and genomic instability induced by topoisomerase 2 inhibitors in cells with FLT3 internal tandem duplication

Oncotarget(2021)10.18632/oncotarget.28042
N/A
0DataRank · unranked
3 citations

Shivani Kapoor, Eric S. Tvedte, Kshama A. Doshi, Ying Zou, Prerna Singh +8 more

Mucoricin is a Ricin-Like Toxin that is Critical for the Pathogenesis of Mucormycosis

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.13.426274
N/A
0DataRank · unranked
11 citations

Clara Baldin, Yiyou Gu, Shakti Singh, Teclegiorgis Gebremariam, Marc Swidergall +16 more

Accumulation of endosymbiont genomes in an insect autosome followed by endosymbiont replacement

Current Biology(2022)10.1016/j.cub.2022.05.024
N/A
0DataRank · unranked
15 citations

Mark T. Gasser, Xuechu Zhao, Luke J. Tallon, Lisa Sadzewicz, Robin E. Bromley +5 more

Common analysis of direct RNA sequencinG CUrrently leads to misidentification of m5C at GCU motifs

Life Science Alliance(2023)10.26508/lsa.202302201
N/A
0DataRank · unranked
4 citations

Robin E. Bromley, Benjamin Sparklin, Mark T. Gasser, Tamanash Bhattacharya, Jarrett F. Lebov +13 more