🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jared M. Sagendorf

QB3

ORCID: 0009-0009-1195-1753
Biochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
5.0Author DataRank

Indexed papers

7in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 7 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank

Nucleic Acids Research(2024)10.1093/nar/gkae1091
Top 8%
2.8DataRank
Top 8%276 citations

Rusham Bhatt, Charmi Bhikadiya, Chunxiao Bi, Alison Biester, Pratyoy Biswas +46 more

Papers

Driven by 11 papers — median percentile 59. Top paper: “Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank”.

Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank

Nucleic Acids Research(2024)10.1093/nar/gkae1091
Top 8%
2.8DataRank
Top 8%276 citations

Rusham Bhatt, Charmi Bhikadiya, Chunxiao Bi, Alison Biester, Pratyoy Biswas +46 more

DNAproDB: an updated database for the automated and interactive analysis of protein–DNA complexes

Nucleic Acids Research(2024)10.1093/nar/gkae970
Top 24%
0.848DataRank
Top 24%38 citations

Ari S Cohen, Jared M. Sagendorf, Helen M. Berman, Remo Rohs, Raktim Mitra

Geometric deep learning of protein–DNA binding specificity

Nature Methods(2024)10.1038/s41592-024-02372-w
N/A
0.635DataRank · unranked
68 citations

Jinsen Li, Jared M. Sagendorf, Yibei Jiang, Ari S Cohen, Tsu-Pei Chiu +3 more

RCSB Protein Data Bank: Delivering integrative structures alongside experimental structures and computed structure models

Nucleic Acids Research(2025)10.1093/nar/gkaf1187
Top 40%
0.483DataRank
Top 40%17 citations

Yana Rose, Dennis W. Piehl, José M. Duarte, Sebastian Bittrich, Chunxiao Bi +21 more

Structure-based prediction of protein-nucleic acid binding using graph neural networks

Biophysical Reviews(2024)10.1007/s12551-024-01201-w
N/A
0.470DataRank · unranked
22 citations

Raktim Mitra, Jiawei Huang, Xiaojiang S. Chen, Remo Rohs, Jared M. Sagendorf

PDB-IHM: A System for Deposition, Curation, Validation, and Dissemination of Integrative Structures

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.168963
Top 43%
0.439DataRank
Top 43%12 citations

Benjamin Webb, Arthur O. Zalevsky, Hongsuda Tangmunarunkit, Monica Sekharan, Serban Voinea +11 more

IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods

Journal of Molecular Biology(2024)10.1016/j.jmb.2024.168546
Top 46%
0.395DataRank
Top 46%11 citations

Benjamin Webb, John Westbrook, Thomas D. Goddard, Christian A. Hanke, Andrea Graziadei +30 more

PNAbind: Structure-based prediction of protein-nucleic acid binding using graph neural networks

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.27.582387
N/A
0DataRank · unranked
1 citations

Raktim Mitra, Jiawei Huang, Xiaojiang S. Chen, Remo Rohs, Jared M. Sagendorf

Crystal Structures of Ternary Complexes of MEF2 and NKX2–5 Bound to DNA Reveal a Disease Related Protein–Protein Interaction Interface

Journal of Molecular Biology(2020)10.1016/j.jmb.2020.07.004
N/A
0DataRank · unranked
5 citations

Jun Zhao, Jared M. Sagendorf, Niroop Rajashekar, Jiang Xu, Ana Carolina Dantas Machado +5 more

IHMValidation: Assessment of Integrative Structure Models Deposited to the Protein Data Bank

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.169598
Top 100%
0DataRank
Top 100%0 citations

Brinda Vallat, Benjamin Webb, Hongsuda Tangmunarunkit, Monica Sekharan, Aref Shafaeibejestan +22 more

DeepPBS: Geometric deep learning for interpretable prediction of protein–DNA binding specificity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.15.571942
N/A
0DataRank · unranked
3 citations

Jinsen Li, Jared M. Sagendorf, Yibei Jiang, Tsu-Pei Chiu, Remo Rohs +1 more