Epigenetic patterns in a complete human genome is a dataset published in Science (2022). On theSindex it has a DataRank of 3.9, placing it in the top 5.8% of the data-sharing corpus. It has been cited 322 times, with 100 citing works in its 1-hop citation network. Its calibrated FAIR score is 67/100.
Ranks in the top 6% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“HG002 nanoNOMe data can be accessed on Sequence Read Archive with BioProject Accession number PRJNA725525”
The paper gives a BioProject accession (PRJNA725525), which is a persistent identifier scheme (re3data/IDs.org).
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“HG002 nanoNOMe data can be accessed on Sequence Read Archive with BioProject Accession number PRJNA725525”
The paper names Sequence Read Archive (SRA), a curated repository listed in re3data.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“HG002 nanoNOMe data can be accessed on Sequence Read Archive with BioProject Accession number PRJNA725525”
The dataset identifier appears only in the body text (Data and Materials Availability section), not in the reference list. [majority verdict 'partial' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Data and Materials Availability: Sequencing data: • Nanopolish methylation calls are available on zenodo (79) • HG002 nanoNOMe data can be accessed on Sequence Read Archive with BioProject Accession number PRJNA725525 • CUT&RUN data on CHM13 and HG002 can be accessed on Sequence Read Archive with BioProject Accession PRJNA559484 and PRJNA752795 • All other datasets used in this study are properly cited with accessions referenced in the methods and materials”
The data-availability statement points to multiple public repositories with accessions, matching Colavizza category 3.
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The sequenced cell line CHM13 and HG002 nanopore datasets surveyed 32.19M (99.7% of total CpGs) and 32.26M (99.9% of total CpGs) CpGs.”
The data's extent is described in running prose, not in an itemised inventory section, table, or list. [majority verdict 'partial' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“HG002 nanoNOMe data can be accessed on Sequence Read Archive with BioProject Accession number PRJNA725525”
The text gives a route to the data with no stated precondition (public repository, no embargo or registration).
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“HG002 nanoNOMe data can be accessed on Sequence Read Archive with BioProject Accession number PRJNA725525”
The paper describes an access action (can be accessed on SRA) but does not apply an explicit access-level label.
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
No gatekeeper is named for the human-derived data; the data are deposited in open repositories without restriction.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not state when the data become available (beyond publication) nor how long they persist. [majority verdict 'no' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for the released data; the paper does not specify whether the data are in CSV, FASTQ, BAM, etc. [majority verdict 'no' (4/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No community standard (FAIRsharing-registered checklist, schema, or ontology) is named for the data.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
No identifier for an external resource (other than the paper's own dataset) is provided; resources are cited only by reference number. [majority verdict 'no' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The CC BY license in the footer applies to the article, not the data; no separate license for the data is stated.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is given for the released data; the data are referred to by accession only.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“Code for all CHM13 and HG002 CpG methylation and GpC methylation available: https://github.com/timplab/T2T- Epigenetics and zenodo (79)”
The paper gives a machine-resolvable code repository URL (GitHub) and a Zenodo DOI, both authoritative locators.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“This study was supported by grants from the NIH R01HG009190 (W.T.), F32 GM134558 (G.A.L.), R24 DK106766-01A1 (M.C.S.), U24HG010263 (M.C.S.), 1R01HG011274-01 and 1U01HG010971 (K.H.M.)”
The paper provides specific award/grant numbers (e.g., R01HG009190) attached to named funders.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“To measure CpG methylation in nanopore data we used Nanopolish (v0.13.2)”
The paper names specific software tools and versions used to produce the data (e.g., Nanopolish v0.13.2).
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, data dictionary, codebook) is named as accompanying the data, and no variable-definition table appears in the article.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.867
From this paper's citation signal
Citation Network Contribution
3.0
From 100 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 100 citers.
NIGMS NIH HHS
Grant: R01 GM123312
NHGRI NIH HHS
Grant: R01 HG011274
NCI NIH HHS
Grant: U01 CA253481
NHGRI NIH HHS
Grant: R01 HG002385
NHGRI NIH HHS
Grant: U01 HG010971
NIGMS NIH HHS
Grant: F32 GM134558
NHGRI NIH HHS
Grant: R01 HG009190
NHGRI NIH HHS
Grant: U24 HG010263
NIDDK NIH HHS
Grant: R24 DK106766
NIGMS NIH HHS
Grant: T32 GM007445
MeSH Terms