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COG database update: focus on microbial diversity, model organisms, and widespread pathogens

Nucleic Acids Research(2020)10.1093/nar/gkaa1018Source: DataRank Database

COG database update: focus on microbial diversity, model organisms, and widespread pathogens is a dataset published in Nucleic Acids Research (2020). On theSindex it has a DataRank of 5.9, placing it in the top 3.4% of the data-sharing corpus. It has been cited 1,021 times, with 100 citing works in its 1-hop citation network.

Top 3%percentile

5.9DataRank

Ranks in the top 3% for downstream scientific impact

Data paper Open Access1,021 citations · 100 citing works in its network

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Linked data & code

gen pfam

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (4 grants)Impact (FWCI 38.10)OA: goldTopics (45)Linked Datasets (25)DataCite Reuse (25)IDs (PubMed, PMC, OpenAlex)Annotations (2)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (1/3)

Dataset classification

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DataRank Breakdown

Base Score 18%Citation Network 82%

Base Score Contribution

1.0

From this paper's citation signal

Citation Network Contribution

4.8

From 100 citing papers with measurable signal

Learn more about DataRank methodology →

Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 100 citers.

IPGA: A handy integrated prokaryotes genome and pan‐genome analysis web service
iMeta2022166 citations18 referencesContributes 0.284
VFDB 2022: a general classification scheme for bacterial virulence factors
Nucleic Acids Research20211,730 citations33 referencesContributes 0.226
Database resources of the National Center for Biotechnology Information in 2025
Nucleic Acids Research2024482 citations39 referencesContributes 0.158
eggNOG 6.0: enabling comparative genomics across 12 535 organisms
Nucleic Acids Research2022352 citations38 referencesContributes 0.154
OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity
Nucleic Acids Research2022599 citations42 referencesContributes 0.152

Authors (6)

Yuri I. Wolf ORCID,Kira S. Makarova ORCID,Roberto Vera Alvarez ORCID,David Landsman ORCID,Eugene V. Koonin ORCID

Live enrichment

PubMed:33167031 PMC:PMC7778934 OpenAlex:https://openalex.org/W3100584158

Natural Environment Research Council

Grant: NE/R017050/1

National Institutes of Health

NLM NIH HHS

FWCI

38.10

Citation Percentile

1.0%

Influential Citations

Citation Trend

2020

2021

2022

2023

2024

2025

2026

gold

journalhttps://academic.oup.com/nar/article-pdf/49/D1/D274/35364265/gkaa1018.pdf

GOLDhttps://academic.oup.com/nar/article-pdf/49/D1/D274/35364265/gkaa1018.pdf

publisherhttps://academic.oup.com/nar/article-pdf/49/D1/D274/35364265/gkaa1018.pdf

publisherhttp://academic.oup.com/nar/article-pdf/49/D1/D274/35364265/gkaa1018.pdf

journalhttps://doi.org/10.1093/nar/gkaa1018

Fields of Study

Genomics and Phylogenetic StudiesMicrobial Community Ecology and PhysiologyRNA and protein synthesis mechanismsComputer ScienceMedicineBiologyEnvironmental ScienceArchaeaArchaeal ProteinsBacteriaBacterial ProteinsCRISPR-Cas SystemsDatabases, GeneticGene OntologyGenome, ArchaealGenome, BacterialHumansMolecular Sequence AnnotationSpores, Bacterial

MeSH Terms

ArchaeaBacteriaBacterial ProteinsHumansSpores, BacterialGenome, BacterialArchaeal ProteinsGenome, ArchaealDatabases, GeneticMolecular Sequence AnnotationGene OntologyCRISPR-Cas Systems

Keywords

RefSeqGenBankBiologyCogSequence databaseGenomeArchaeaUniProtGeneticsComputational biologyGenome projectDatabaseGeneComputer science

Additional file 1 of Density Peak clustering of protein sequences associated to a Pfam clan reveals clear similarities and interesting differences with respect to manual family annotation

10.6084/m9.figshare.14211341.v1figshare

Additional file 1 of Density Peak clustering of protein sequences associated to a Pfam clan reveals clear similarities and interesting differences with respect to manual family annotation

10.6084/m9.figshare.14211341figshare

Additional file 1 of To kill or to be killed: pangenome analysis of Escherichia coli strains reveals a tailocin specific for pandemic ST131

10.6084/m9.figshare.20087966.v1figshare

Additional file 1 of To kill or to be killed: pangenome analysis of Escherichia coli strains reveals a tailocin specific for pandemic ST131

10.6084/m9.figshare.20087966figshare

Additional file 2 of To kill or to be killed: pangenome analysis of Escherichia coli strains reveals a tailocin specific for pandemic ST131

10.6084/m9.figshare.20087969.v1figshare

Additional file 2 of To kill or to be killed: pangenome analysis of Escherichia coli strains reveals a tailocin specific for pandemic ST131

10.6084/m9.figshare.20087969figshare

Additional file 4 of To kill or to be killed: pangenome analysis of Escherichia coli strains reveals a tailocin specific for pandemic ST131

10.6084/m9.figshare.20087975.v1figshare

Additional file 4 of To kill or to be killed: pangenome analysis of Escherichia coli strains reveals a tailocin specific for pandemic ST131

10.6084/m9.figshare.20087975figshare

Additional file 1 of Identification and whole-genome sequencing analysis of Vibrio vulnificus strains causing pearl gentian grouper disease in China

10.6084/m9.figshare.20499850.v1figshare

Additional file 1 of Identification and whole-genome sequencing analysis of Vibrio vulnificus strains causing pearl gentian grouper disease in China

10.6084/m9.figshare.20499850figshare

Additional file 10 of Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions

10.6084/m9.figshare.20745284.v1figshare

Additional file 10 of Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions

10.6084/m9.figshare.20745284figshare

Additional file 1 of Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions

10.6084/m9.figshare.20745287.v1figshare

Additional file 1 of Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions

10.6084/m9.figshare.20745287figshare

Additional file 2 of Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions

10.6084/m9.figshare.20745290.v1figshare

Additional file 2 of Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions

10.6084/m9.figshare.20745290figshare

Additional file 3 of Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions

10.6084/m9.figshare.20745293.v1figshare

Additional file 3 of Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions

10.6084/m9.figshare.20745293figshare

Additional file 4 of Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions

10.6084/m9.figshare.20745296.v1figshare

Additional file 4 of Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions

10.6084/m9.figshare.20745296figshare

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COG database update: focus on microbial diversity, model organisms, and widespread pathogens

FAIR Checklist

DataRank Breakdown

Top 5 citers driving the network score

Authors (6)

Funding (4 grants)

Impact

Open Access

Topics

Linked Datasets (25)

Annotations (Europe PMC)

Related Papers (10)