🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Fostering Data Sharing

Search Papers Authors Institutions Grants FAIR About

TheSindex

Fostering Data Sharing

Empowering the data sharing that empowers science — an open, citation-grounded index for datasets.

Product

Search
API
Explore
Rankings

Resources

Methodology
Data Sources
Documentation
Press

Organization

About
Team
Wikidata

© 2026 theSindex. All rights reserved.

Home
Authors
Sharon L. R. Kardia

Sharon L. R. Kardia

University of Michigan

ORCID: 0000-0002-9853-3379

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

267Author DataRank

Indexed papers

61in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 61 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

GENCODE: The reference human genome annotation for The ENCODE Project

Genome Research(2012)10.1101/gr.135350.111

Top 1%

12.0DataRank

Top 1%5084 citations

Michael G. FitzGerald, Electra Tapanari, Mark Diekhans, Felix Kokocinski, Rizi Ai +42 more

Papers

Driven by 862 papers — median percentile 94. Top paper: “GENCODE: The reference human genome annotation for The ENCODE Project”.

GENCODE: The reference human genome annotation for The ENCODE Project

Genome Research(2012)10.1101/gr.135350.111

Top 1%

12.0DataRank

Top 1%5084 citations

Michael G. FitzGerald, Electra Tapanari, Mark Diekhans, Felix Kokocinski, Rizi Ai +42 more

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

Genome Research(2009)10.1101/gr.080531.108

Top 1%

12.0DataRank

Top 1%592 citations

Jennifer Harrow, Rachel A. Harte, Craig Wallin, Mark Diekhans, Bin Ma +52 more

Inherited causes of clonal haematopoiesis in 97,691 whole genomes

Nature(2020)10.1038/s41586-020-2819-2

N/A

11.6DataRank · unranked

748 citations

Joshua S. Weinstock, Satish K. Nandakumar, Charles P. Fulco, Erik L. Bao, Seyedeh M. Zekavat +95 more

Sequencing and comparison of yeast species to identify genes and regulatory elements

Nature(2003)10.1038/nature01644

Top 1%

11.4DataRank

Top 1%1802 citations

Nick Patterson, Matthew Endrizzi, Matthew E. Hurles, Matthew G. Endrizzi, Bruce W. Birren +1 more

Transcriptional regulatory code of a eukaryotic genome

Nature(2004)10.1038/nature02800

Top 1%

10.6DataRank

Top 1%2201 citations

D. Benjamin Gordon, Tong Ihn Lee, Nicola J. Rinaldi, Kenzie D. Macisaac, Timothy W. Danford +21 more

Correction: Corrigendum: Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases

Scientific Reports(2016)10.1038/srep19384

N/A

10.4DataRank · unranked

722 citations

Tao Huang, Francesca Petralia, Quan Long, Bin Zhang, Carmen Argmann +129 more

Genetic effects on gene expression across human tissues

Nature(2017)10.1038/nature24277

Top 1%

10.1DataRank

Top 1%4706 citations

Barbara E. Engelhardt, Stephen B. Montgomery, Sara Mostafavi, Ayellet V. Segrè, Hailei Zhang +227 more

Integrative analysis of 111 reference human epigenomes

Nature(2015)10.1038/nature14248

Top 1%

10.0DataRank

Top 1%7189 citations

Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen +93 more

Genome sequence, comparative analysis and haplotype structure of the domestic dog

Nature(2005)10.1038/nature04338

Top 2%

9.2DataRank

Top 2%2636 citations

Claire M. Wade, Tarjei S. Mikkelsen, Elinor K. Karlsson, David B. Jaffe, Michael Kamal +46 more

Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes

Genome Research(2007)10.1101/gr.6593807

N/A

9.1DataRank · unranked

196 citations

Yanxiao Zhang, Leopold Parts, Julius Brennecke, Emily Hodges, Gregory J. Hannon +2 more

Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments

Nucleic Acids Research(2013)10.1093/nar/gkt1249

Top 2%

8.9DataRank

Top 2%525 citations

Sharon L. R. Kardia, Yanxiao Zhang

GENCODE reference annotation for the human and mouse genomes

Nucleic Acids Research(2018)10.1093/nar/gky955

Top 2%

8.2DataRank

Top 2%3533 citations

Mark Diekhans, Anne-Maud Ferreira, Todd A. Johnson, Irwin Jungreis, Jane E Loveland +59 more

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

Nature(2010)10.1038/nature09725

Top 2%

8.1DataRank

Top 2%911 citations

Sebastian Will, Yuri B. Schwartz, Aki Minoda, Nicole C. Riddle, Jason Ernst +28 more

Integrative annotation of chromatin elements from ENCODE data

Nucleic Acids Research(2012)10.1093/nar/gks1284

Top 2%

7.9DataRank

Top 2%628 citations

Jason Ernst, Steven P. Wilder, Anshul Kundaje, Robert S. Harris, Max Libbrecht +10 more

A comparative encyclopedia of DNA elements in the mouse genome

Nature(2014)10.1038/nature13992

Top 2%

7.9DataRank

Top 2%1946 citations

Yong Cheng, Alessandra Breschi, Jost Vielmetter, Weisheng Wu, Tyrone Ryba +150 more

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

Nature(2004)10.1038/nature03025

Top 2%

7.8DataRank

Top 2%2027 citations

Jean-Marc Aury, Frédéric Brunet, Jean-Louis Petit, Nicole Stange-Thomann, Evan Mauceli +69 more

A high-resolution map of human evolutionary constraint using 29 mammals

Nature(2011)10.1038/nature10530

Top 2%

7.6DataRank

Top 2%1227 citations

Genome Institute at Washington University, Manuel Garber, Or Zuk, Alireza Heravi-Moussavi, Wouter Meuleman +49 more

Assessing the contribution of rare variants to complex trait heritability from whole-genome sequence data

Nature Genetics(2022)10.1038/s41588-021-00997-7

N/A

7.2DataRank · unranked

363 citations

Deepti Jain, Zhili Zheng, TOPMed Anthropometry Working Group, Stella Aslibekyan, Diane M. Becker +95 more

Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program

Nature(2021)10.1038/s41586-021-03205-y

Top 3%

7.0DataRank

Top 3%2322 citations

Daniel Harris, Michael D. Kessler, Jedidiah Carlson, Zachary A. Szpiech, Raúl Torres +95 more

Deep learning for regulatory genomics

Nature Biotechnology(2015)10.1038/nbt.3313

N/A

7.0DataRank · unranked

185 citations

Sharon L. R. Kardia, Yongjin Park

A cis-regulatory map of the Drosophila genome

Nature(2011)10.1038/nature09990

Top 3%

7.0DataRank

Top 3%543 citations

Christopher D. Brown, Christopher Aaron Bristow, Steven W. Miller, Ulrich Wagner, Yanxiao Zhang +40 more

Defining functional DNA elements in the human genome

Proceedings of the National Academy of Sciences(2014)10.1073/pnas.1318948111

Top 3%

6.9DataRank

Top 3%755 citations

Valentina Snetkova, Louis Philip Benoit Bouvrette, Anshul Kundaje, Georgi K. Marinov, Lucas D. Ward +29 more

GENCODE 2021

Nucleic Acids Research(2020)10.1093/nar/gkaa1087

Top 3%

6.9DataRank

Top 3%1480 citations

Mark Diekhans, Irwin Jungreis, Julien Lagarde, Jane E Loveland, Shinichi Morishita +59 more

Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues

Nature Biotechnology(2015)10.1038/nbt.3157

Top 3%

6.7DataRank

Top 3%440 citations

Sharon L. R. Kardia, Jason Ernst

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Reliable prediction of regulator targets using 12 Drosophila genomes

Genome Research(2007)10.1101/gr.7090407

N/A

6.4DataRank · unranked

162 citations

Alexander Stark, Sushmita Roy, Sharon L. R. Kardia, Yanxiao Zhang

Using an atlas of gene regulation across 44 human tissues to inform complex disease- and trait-associated variation

Nature Genetics(2018)10.1038/s41588-018-0154-4

Top 3%

6.3DataRank

Top 3%492 citations

Eric R. Gamazon, Ayellet V. Segrè, Martijn van de Bunt, Xiaoquan Wen, Emilio Rodríguez-Ruiz +14 more

Evidence of Abundant Purifying Selection in Humans for Recently Acquired Regulatory Functions

Science(2012)10.1126/science.1225057

Top 3%

6.2DataRank

Top 3%234 citations

Sharon L. R. Kardia, Lucas D. Ward

Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions

Nature Biotechnology(2016)10.1038/nbt.3678

N/A

6.0DataRank · unranked

187 citations

Alexandre Melnikov, Xiaolan Zhang, Li Wang, Peter Rogov, Tarjei S. Mikkelsen +2 more

The Genotype-Tissue Expression (GTEx) project

Nature Genetics(2013)10.1038/ng.2653

Top 3%

6.0DataRank

Top 3%10097 citations

Mike Salvatore, Rebecca Phillips, Bernadette Mestichelli, Saboor Shad, Richard Hasz +144 more

Pan-cancer analysis of whole genomes

Nature(2020)10.1038/s41586-020-1969-6

Top 3%

5.9DataRank

Top 3%3307 citations

Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams +1244 more

Genetic diversity fuels gene discovery for tobacco and alcohol use

Nature(2022)10.1038/s41586-022-05477-4

N/A

5.9DataRank · unranked

513 citations

Xingyan Wang, Fang Chen, Seon-Kyeong Jang, Mengzhen Liu, Chen Wang +95 more

Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging

Genome biology(2021)10.1186/s13059-021-02398-9

N/A

5.8DataRank · unranked

307 citations

Josine L. Min, Rebecca Richmond, Ake T. Lu, Maria Sobczyk, Gail Davies +95 more

SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes

Nature Communications(2021)10.1038/s41467-021-22905-7

N/A

5.6DataRank · unranked

174 citations

Rachel Sealfon, Sharon L. R. Kardia, Irwin Jungreis

SNP Set Association Analysis for Familial Data

Genetic Epidemiology(2012)10.1002/gepi.21676

N/A

5.6DataRank · unranked

110 citations

Michael P. Epstein, Lawrence F. Bielak, Min A. Jhun, Sharon L. R. Kardia, Patricia A. Peyser +2 more

Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases

Nature Methods(2016)10.1038/nmeth.3799

Top 4%

5.4DataRank

Top 4%384 citations

David Lamparter, Richard Sandstrom, Sharon L. R. Kardia, Zoltán Kutalik, Sven Bergmann +1 more

Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole-genome sequencing studies at scale

Nature Genetics(2020)10.1038/s41588-020-0676-4

N/A

5.3DataRank · unranked

295 citations

Zilin Li, Hufeng Zhou, Sheila M. Gaynor, Yaowu Liu, Han Chen +88 more

Regulatory genomic circuitry of human disease loci by integrative epigenomics

Nature(2021)10.1038/s41586-020-03145-z

Top 4%

5.2DataRank

Top 4%468 citations

Benjamin T. James, Yongjin P. Park, Wouter Meuleman, Sharon L. R. Kardia, Carles B. Adsera

Improved Identification and Analysis of Small Open Reading Frame Encoded Polypeptides

Analytical Chemistry(2016)10.1021/acs.analchem.6b00191

N/A

5.2DataRank · unranked

150 citations

Jolene K. Diedrich, Irwin Jungreis, Cynthia Donaldson, Joan Vaughan, Sharon L. R. Kardia +4 more

Transcriptomic signatures across human tissues identify functional rare genetic variation

Science(2020)10.1126/science.aaz5900

N/A

5.0DataRank · unranked

166 citations

Benjamin J. Strober, Jonah Einson, Nathan S. Abell, François Aguet, Alvaro N. Barbeira +183 more

Methods in Comparative Genomics: Genome Correspondence, Gene Identification and Regulatory Motif Discovery

Journal of Computational Biology(2004)10.1089/1066527041410319

N/A

5.0DataRank · unranked

105 citations

Nick Patterson, Bonnie Berger, Matthew E. Hurles, Bruce W. Birren, Sharon L. R. Kardia

Three Periods of Regulatory Innovation During Vertebrate Evolution

Science(2011)10.1126/science.1202702

N/A

4.9DataRank · unranked

143 citations

Sharon L. R. Kardia, Olof Emanuelsson, Alexander Stark, Michele Clamp, Sofie R. Salama +6 more

Survey of variation in human transcription factors reveals prevalent DNA binding changes

Science(2016)10.1126/science.aad2257

N/A

4.7DataRank · unranked

153 citations

Anastasia Vedenko, Jesse V. Kurland, Julia M. Rogers, Stephen S. Gisselbrecht, Elizabeth J. Rossin +19 more

Comparative validation of the D. melanogaster modENCODE transcriptome annotation

Genome Research(2014)10.1101/gr.159384.113

Top 5%

4.6DataRank

Top 5%192 citations

David Sturgill, Jiaxin Qu, Huaiyang Jiang, Soo Park, Nathan Boley +67 more

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Nature(2020)10.1038/s41586-020-1965-x

Top 5%

4.6DataRank

Top 5%668 citations

Federico Abascal, Jeremiah A. Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj +1240 more

Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks

Genome Research(2012)10.1101/gr.127191.111

N/A

4.3DataRank · unranked

126 citations

Sushmita Roy, Ferhat Ay, Patrick E. Meyer, Rogerio Candeias, Christopher A. Bristow +2 more

Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types

Genome Research(2013)10.1101/gr.144840.112

Top 5%

4.2DataRank

Top 5%102 citations

Sharon L. R. Kardia, Jason Ernst

Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes

Genome Research(2007)10.1101/gr.7105007

N/A

4.2DataRank · unranked

89 citations

Sharon L. R. Kardia, Albert J. Vilella

Discovery and validation of sub-threshold genome-wide association study loci using epigenomic signatures

eLife(2016)10.7554/elife.10557

N/A

4.1DataRank · unranked

127 citations

Nathan R. Tucker, Gizem Rizki, Robert Mills, Peter H.L. Krijger, Elzo de Wit +18 more

NEBULA is a fast negative binomial mixed model for differential or co-expression analysis of large-scale multi-subject single-cell data

Communications Biology(2021)10.1038/s42003-021-02146-6

N/A

4.1DataRank · unranked

178 citations

Jose Davila-Velderrain, Tomokazu S. Sumida, David A. Hafler, Sharon L. R. Kardia, Alexander M. Kulminski +2 more

Analyses of mRNA structure dynamics identify embryonic gene regulatory programs

Nature Structural & Molecular Biology(2018)10.1038/s41594-018-0091-z

N/A

4.1DataRank · unranked

132 citations

Eva Maria Novoa, Charles E. Vejnar, Valeria Yartseva, Carter M. Takacs, Sharon L. R. Kardia +2 more

New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes

Genome Research(2011)10.1101/gr.112516.110

N/A

4.0DataRank · unranked

124 citations

Ida Moltke, Adam Roth, Stefan Washietl, Jiayu Wen, Sharon L. R. Kardia +4 more

Single-cell multiregion dissection of Alzheimer’s disease

Nature(2024)10.1038/s41586-024-07606-7

Top 6%

4.0DataRank

Top 6%281 citations

Carles B. Adsera, Leyla Anne Akay, Ziting Xia, José Dávila-Velderrain, Ayesha P. Ng +15 more

Analysis of variation at transcription factor binding sites in Drosophila and humans

Genome Biology(2012)10.1186/gb-2012-13-9-r49

Top 6%

3.8DataRank

Top 6%104 citations

Junaid Akhtar, Yanxiao Zhang, Kathryn Beal, Charles Girardot, Gautier Koscielny +6 more

Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries

Nature Communications(2018)10.1038/s41467-018-04668-w

N/A

3.7DataRank · unranked

109 citations

Sanni Ruotsalainen, Robert E. Handsaker, Maris Alver, Jonathan M. Bloom, Timothy Poterba +442 more

Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees

Genome Research(2013)10.1101/gr.161968.113

N/A

3.7DataRank · unranked

86 citations

Albert J. Vilella, Mukul S. Bansal, Sharon L. R. Kardia, Yi-Chieh Wu

Single-cell atlas reveals correlates of high cognitive function, dementia, and resilience to Alzheimer’s disease pathology

Cell(2023)10.1016/j.cell.2023.08.039

Top 6%

3.7DataRank

Top 6%492 citations

Zhuyu Peng, Carles B. Adsera, Matheus B. Victor, Gloria Suella Menchaca, Sudhagar Babu +26 more

Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci

Science(2018)10.1126/science.aar3146

N/A

3.6DataRank · unranked

123 citations

Eugene Lurie, Ivenise Carrero, Piotr Pawliczek, Ronak Y. Patel, Joel Rozowsky +15 more

Joint Bayesian inference of risk variants and tissue-specific epigenomic enrichments across multiple complex human diseases

Nucleic Acids Research(2016)10.1093/nar/gkw627

N/A

3.6DataRank · unranked

82 citations

Sharon L. R. Kardia, Yue Li

TrustLLM: Trustworthiness in Large Language Models

arXiv (Cornell University)(2024)10.48550/arxiv.2401.05561

N/A

3.5DataRank · unranked

53 citations

Y. Huang, Haoran Wang, Siyuan Wu, Qihui Zhang, Chujie Gao +65 more

Review of Wastewater Reuse in the Mediterranean Countries, Focusing on Regulations and Policies for Municipal and Industrial Applications

Global NEST Journal(2013)10.30955/gnj.000936

N/A

3.5DataRank · unranked

79 citations

Ioannis K. Kalavrouziotis, Petros Gikas, M Allam, G Allam, A Angelakis +71 more

PRC2 Is Required to Maintain Expression of the Maternal Gtl2-Rian-Mirg Locus by Preventing De Novo DNA Methylation in Mouse Embryonic Stem Cells

Cell Reports(2015)10.1016/j.celrep.2015.07.053

N/A

3.3DataRank · unranked

77 citations

David A. Hendrix, Effie Apostolou, Alice H. Buchner, Matthew C. Canver, Semir Beyaz +19 more

Mapping the epigenomic and transcriptomic interplay during memory formation and recall in the hippocampal engram ensemble

Nature Neuroscience(2020)10.1038/s41593-020-00717-0

N/A

3.3DataRank · unranked

170 citations

Hiruy S. Meharena, Vishnu Dileep, Ravikiran M. Raju, Jose Davila-Velderrain, Amy Letao Zhang +7 more

Genetic drivers of m6A methylation in human brain, lung, heart and muscle

Nature Genetics(2021)10.1038/s41588-021-00890-3

N/A

3.3DataRank · unranked

152 citations

Lei Hou, Yongjin P. Park, Benoit Molinie, Alvaro N. Barbeira, François Aguet +4 more

Standardized annotation of translated open reading frames

Nature Biotechnology(2022)10.1038/s41587-022-01369-0

Top 7%

3.2DataRank

Top 7%252 citations

Jorge Ruiz-Orera, John R. Prensner, Marie A. Brunet, Ferriol Calvet, Irwin Jungreis +31 more

Evolutionary principles of modular gene regulation in yeasts

eLife(2013)10.7554/elife.00603

N/A

3.2DataRank · unranked

90 citations

Sushmita Roy, Mark P Styczynsky, Jenna Pfiffner, Courtney French, Amanda Socha +11 more

Phylogenetically and spatially conserved word pairs associated with gene-expression changes in yeasts

Genome Biology(2003)10.1186/gb-2003-4-7-r43

N/A

3.1DataRank · unranked

55 citations

Alan M Moses, Sharon L. R. Kardia, Matthew E. Hurles, Michael B. Eisen, Derek Y. Chiang

Soft X-Ray Tomography Reveals Gradual Chromatin Compaction and Reorganization during Neurogenesis In Vivo

Cell Reports(2016)10.1016/j.celrep.2016.10.060

N/A

3.0DataRank · unranked

131 citations

E. Josephine Clowney, Angeliki Magklara, Angela Yen, Eirene Markenscoff-Papadimitriou, Markko Myllys +5 more

Reconciliation Revisited: Handling Multiple Optima when Reconciling with Duplication, Transfer, and Loss

Journal of Computational Biology(2013)10.1089/cmb.2013.0073

N/A

3.0DataRank · unranked

71 citations

Eric J. Alm, Sharon L. R. Kardia, Mukul S. Bansal

Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival

npj Genomic Medicine(2018)10.1038/s41525-017-0040-5

N/A

2.9DataRank · unranked

87 citations

B. F. Francis Ouellette, Nicholas A Sinnott-Armstrong, Michał P. Świtnicki, Malene Juul, Francesco Marabita +8 more

Challenges in IBD Research: Environmental Triggers

Inflammatory Bowel Diseases(2019)10.1093/ibd/izz076

Top 8%

2.8DataRank

Top 8%93 citations

James D. Lewis, Emeran A. Mayer, Charles N. Bernstein, Scott E. Plevy, Emil Chuang +19 more

Systematic chromatin state comparison of epigenomes associated with diverse properties including sex and tissue type

Nature Communications(2015)10.1038/ncomms8973

Top 8%

2.8DataRank

Top 8%80 citations

Sharon L. R. Kardia, Angela Yen

Core and region-enriched networks of behaviorally regulated genes and the singing genome

Science(2014)10.1126/science.1256780

N/A

2.7DataRank · unranked

127 citations

Andreas R. Pfenning, Jason T. Howard, Charles A Blatti, Fang Liu, James M. Ward +11 more

A vast resource of allelic expression data spanning human tissues

Genome Biology(2020)10.1186/s13059-020-02122-z

Top 8%

2.7DataRank

Top 8%147 citations

François Aguet, Pejman Mohammadi, Kristin G. Ardlie, Anthony Philippakis, Leanne Haggerty +159 more

RANGER-DTL 2.0: rigorous reconstruction of gene-family evolution by duplication, transfer and loss

Bioinformatics(2018)10.1093/bioinformatics/bty314

N/A

2.7DataRank · unranked

107 citations

Sharon L. R. Kardia, Misagh Kordi, Soumya Kundu, Mukul S. Bansal

A wealth of discovery built on the Human Genome Project — by the numbers

Nature(2021)10.1038/d41586-021-00314-6

Top 8%

2.7DataRank

Top 8%101 citations

Deisy Morselli Gysi, Sharon L. R. Kardia, Albert-Ĺaszló Barabási, Alexander J. Gates

Single-cell dissection of the obesity-exercise axis in adipose-muscle tissues implies a critical role for mesenchymal stem cells

Cell Metabolism(2022)10.1016/j.cmet.2022.09.004

N/A

2.7DataRank · unranked

125 citations

Maria Vamvini, Pasquale Nigro, Marcus Ho, Kyriakitsa Galani, Marcus Alvarez +14 more

Single-nucleus multiregion transcriptomic analysis of brain vasculature in Alzheimer’s disease

Nature Neuroscience(2023)10.1038/s41593-023-01334-3

Top 8%

2.6DataRank

Top 8%154 citations

Leyla Anne Akay, Mitchell H. Murdock, Yongjin P. Park, Fabiola Galiana-Melendez, Adele Bubnys +8 more

MicroRNA and gene expression changes in unruptured human cerebral aneurysms

Journal of Neurosurgery(2016)10.3171/2015.11.jns151841

N/A

2.5DataRank · unranked

51 citations

Joanna S. Kerley-Hamilton, Amy Teegarden, Craig R. Tomlinson, Rachael Kuintzle, Nathan Simmons +7 more

Neuronal DNA double-strand breaks lead to genome structural variations and 3D genome disruption in neurodegeneration

Cell(2023)10.1016/j.cell.2023.08.038

N/A

2.5DataRank · unranked

129 citations

Carles B. Adsera, Hansruedi Mathys, Asaf Marco, Gwyneth M. Welch, Hiruy S. Meharena +7 more

The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication

Proceedings of the National Academy of Sciences(2008)10.1073/pnas.0707293105

N/A

2.5DataRank · unranked

58 citations

Michael B. Elowitz, Sharon L. R. Kardia, Roy Kishony, Aviva Presser

Reconstruction of Cell-type-Specific Interactomes at Single-Cell Resolution

Cell Systems(2019)10.1016/j.cels.2019.10.007

N/A

2.4DataRank · unranked

80 citations

Jose Davila-Velderrain, Sharon L. R. Kardia, José Dávila-Velderrain, Shahin Mohammadi

Genome-wide In Vivo CNS Screening Identifies Genes that Modify CNS Neuronal Survival and mHTT Toxicity

Neuron(2020)10.1016/j.neuron.2020.01.004

N/A

2.4DataRank · unranked

93 citations

Mollie R. Mitchem, Sergio Sebastian Pineda, Lea J. Hachigian, Hyeseung Lee, Vanessa Lau +14 more

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

Science(2010)10.1126/science.1198374

Top 9%

2.4DataRank

Top 9%1089 citations

Sushmita Roy, Jason Ernst, Peter V. Kharchenko, Yanxiao Zhang, Richard S. Sandstrom +172 more

52 Genetic Loci Influencing Myocardial Mass

Journal of the American College of Cardiology(2016)10.1016/j.jacc.2016.07.729

N/A

2.4DataRank · unranked

135 citations

Jessica van Setten, Niek Verweij, Georg Vogler, Matthew T. Maurano, Xinchen Wang +172 more

Error and Error Mitigation in Low-Coverage Genome Assemblies

PLoS ONE(2011)10.1371/journal.pone.0017034

N/A

2.4DataRank · unranked

36 citations

Alireza Heravi-Moussavi, Sharon L. R. Kardia, Olof Emanuelsson, Melissa J. Hubisz

Alzheimer's loci: epigenetic associations and interaction with genetic factors

Annals of Clinical and Translational Neurology(2015)10.1002/acn3.201

N/A

2.3DataRank · unranked

65 citations

Lei Yu, Matthew L. Eaton, Gyan Srivastava, Julie A. Schneider, Sharon L. R. Kardia +3 more

Neurons burdened by DNA double-strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration

Science Advances(2022)10.1126/sciadv.abo4662

N/A

2.3DataRank · unranked

82 citations

Carles B. Adsera, Eloi Schmauch, José Dávila-Velderrain, Matheus B. Victor, Vishnu Dileep +9 more

Stop codon readthrough generates a C-terminally extended variant of the human vitamin D receptor with reduced calcitriol response

Journal of Biological Chemistry(2018)10.1074/jbc.m117.818526

N/A

2.3DataRank · unranked

80 citations

Irwin Jungreis, Ioanna Tzani, Michael Power, Ruslan I. Dmitriev, Ivaylo P. Ivanov +3 more

A high-throughput screening and computation platform for identifying synthetic promoters with enhanced cell-state specificity (SPECS)

Nature Communications(2019)10.1038/s41467-019-10912-8

N/A

2.2DataRank · unranked

88 citations

Lior Nissim, Doron Stupp, Erez Pery, Adina Binder-Nissim, Karen Weisinger +13 more

Improved gene tree error correction in the presence of horizontal gene transfer

Bioinformatics(2015)10.1093/bioinformatics/btu806

N/A

2.2DataRank · unranked

67 citations

Yi-Chieh Wu, Eric J. Alm, Sharon L. R. Kardia, Mukul S. Bansal

A partnership between the lipid scramblase XK and the lipid transfer protein VPS13A at the plasma membrane

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2205425119

N/A

2.2DataRank · unranked

74 citations

Yumei Wu, Sergio Sebastian Pineda, Francisco J. Garcia, Julia N. Eisen, Marianna Leonzino +6 more

Integrative multi-omics profiling in human decedents receiving pig heart xenografts

Nature Medicine(2024)10.1038/s41591-024-02972-1

N/A

2.1DataRank · unranked

56 citations

Brian D. Piening, Maedeh Mohebnasab, Bo Xia, Chenchen Zhu, Jeffrey Stern +54 more

Single-cell dissection of schizophrenia reveals neurodevelopmental-synaptic axis and transcriptional resilience

medRxiv(2020)10.1101/2020.11.06.20225342

N/A

2.1DataRank · unranked

59 citations

Shahin Mohammadi, Jose Davila-Velderrain, Sivan Subburaju, Daniel Reed Tso, Makayla Hourihan +3 more

SARS-CoV-2 variants evolve convergent strategies to remodel the host response

Cell(2023)10.1016/j.cell.2023.08.026

N/A

2.1DataRank · unranked

113 citations

Ann-Kathrin Reuschl, Benjamin J. Polacco, Lucy G. Thorne, Manisha R. Ummadi, Chengjin Ye +88 more

Evidence of reduced recombination rate in human regulatory domains

Genome Biology(2017)10.1186/s13059-017-1308-x

N/A

2.1DataRank · unranked

61 citations

Abhishek Sarkar, Yanxiao Zhang, Jason Ernst, Sharon L. R. Kardia, Yaping Liu

Evidence for secondary-variant genetic burden and non-random distribution across biological modules in a recessive ciliopathy

Nature Genetics(2020)10.1038/s41588-020-0707-1

N/A

2.0DataRank · unranked

35 citations

Onuralp Söylemez, Aysegül Ozanturk, Niki Mourtzi, Sebastian Akle, Irwin Jungreis +16 more

Plasma-derived extracellular vesicle analysis and deconvolution enable prediction and tracking of melanoma checkpoint blockade outcome

Science Advances(2020)10.1126/sciadv.abb3461

N/A

2.0DataRank · unranked

60 citations

Gyulnara G. Kasumova, William A. Michaud, Jessica Cintolo-Gonzalez, Marta Díaz-Martínez, Jacqueline Ohmura +13 more

Author Correction: Single-cell transcriptomic analysis of Alzheimer’s disease

Nature(2019)10.1038/s41586-019-1329-6

Top 11%

2.0DataRank

Top 11%63 citations

Jose Davila-Velderrain, Zhuyu Peng, Fan Gao, Shahin Mohammadi, Jennie Z. Young +12 more

Motif discovery in physiological datasets

ACM Transactions on Knowledge Discovery from Data(2010)10.1145/1644873.1644875

N/A

2.0DataRank · unranked

36 citations

Collin Stultz, Sharon L. R. Kardia, Piotr Indyk, John Guttag, Collin M. Stultz +2 more

An encyclopedia of enhancer-gene regulatory interactions in the human genome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.09.563812

Top 11%

1.9DataRank

Top 11%120 citations

Kristy S. Mualim, Alireza Karbalayghareh, Maya U. Sheth, Kushal K. Dey, Evelyn Jagoda +41 more

An AR-ERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells

Genome Research(2019)10.1101/gr.230243.117

N/A

1.9DataRank · unranked

63 citations

Kern Rei Chng, Shreyas Lingadahalli, Zikai Chen, Mei Hui Liu, Huy Hoang Do +18 more

Conservation of small RNA pathways in platypus

Genome Research(2008)10.1101/gr.073056.107

N/A

1.9DataRank · unranked

49 citations

Yanxiao Zhang, Ravi Sachidanandam, Carly Smith, Emily Hodges, Zhenyu Xuan +5 more

Genus-Wide Characterization of Bumblebee Genomes Provides Insights into Their Evolution and Variation in Ecological and Behavioral Traits

Molecular Biology and Evolution(2020)10.1093/molbev/msaa240

N/A

1.9DataRank · unranked

118 citations

Jiaxing Huang, Yun Wang, Xiaomeng Zhao, Long Su, Mengya Zhao +43 more

Multi-scale chromatin state annotation using a hierarchical hidden Markov model

Nature Communications(2017)10.1038/ncomms15011

N/A

1.9DataRank · unranked

65 citations

Wouter Meuleman, Jialiang Huang, Kimberly Glass, Luca Pinello, Jianrong Wang +3 more

Evolutionary Dynamics of Abundant Stop Codon Readthrough

Molecular Biology and Evolution(2016)10.1093/molbev/msw189

N/A

1.9DataRank · unranked

75 citations

Clara S. Chan, Robert M. Waterhouse, Gabriel Fields, Alireza Heravi-Moussavi, Sharon L. R. Kardia +1 more

Distinct and Predictive Histone Lysine Acetylation Patterns at Promoters, Enhancers, and Gene Bodies

G3 Genes|Genomes|Genetics(2014)10.1534/g3.114.013565

N/A

1.8DataRank · unranked

46 citations

Jason Ernst, Roberto Salgado, Jie Wu, Robert A. Waterland, Sharon L. R. Kardia +3 more

Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/237313

N/A

1.7DataRank · unranked

47 citations

B. F. Francis Ouellette, Federico Abascal, Grace Tiao, Henrik Hornshøj, Nobuyoshi Hiraoka +64 more

Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes

Cell Reports(2018)10.1016/j.celrep.2018.06.030

N/A

1.7DataRank · unranked

51 citations

Khoi T. Nguyen, George E. Allen, Jerome Jullien, Dinesh Kumar, Tomoki Otani +8 more

Predicting gene expression in massively parallel reporter assays: A comparative study

Human Mutation(2017)10.1002/humu.23197

N/A

1.7DataRank · unranked

52 citations

Haoyang Zeng, Matthew D. Edwards, Gamze Gürsoy, Kevin Tian, R. Alan Harris +20 more

Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.12.945840

N/A

1.7DataRank · unranked

45 citations

Travis Law, Karl R. Clauser, Susan Klaeger, Siranush Sarkizova, François Aguet +22 more

Single-cell dissection of the human motor and prefrontal cortices in ALS and FTLD

Cell(2024)10.1016/j.cell.2024.02.031

Top 13%

1.7DataRank

Top 13%95 citations

Hyeseung Lee, Maria J. Ulloa-Navas, Raleigh M. Linville, Francisco J. Garcia, Kyriakitsa Galani +22 more

Erratum: Genome analysis of the platypus reveals unique signatures of evolution

Nature(2008)10.1038/nature07253

N/A

1.6DataRank · unranked

35 citations

LaDeana W. Hillier, Jennifer A. Marshall Graves, Kerstin Lindblad‐Toh, Elaine A. Ostrander, Frank Grützner +115 more

A multiresolution framework to characterize single-cell state landscapes

Nature Communications(2020)10.1038/s41467-020-18416-6

N/A

1.6DataRank · unranked

66 citations

Jose Davila-Velderrain, Sharon L. R. Kardia, José Dávila-Velderrain, Shahin Mohammadi

Conflicting and ambiguous names of overlapping ORFs in the SARS-CoV-2 genome: A homology-based resolution

Virology(2021)10.1016/j.virol.2021.02.013

N/A

1.6DataRank · unranked

51 citations

Chase W. Nelson, Zachary Ardern, Yaara Finkel, Nevan J. Krogan, Kei Sato +8 more

Whole genome sequence analysis of blood lipid levels in >66,000 individuals

Nature Communications(2022)10.1038/s41467-022-33510-7

N/A

1.6DataRank · unranked

75 citations

Xihao Li, Zilin Li, Akhil Pampana, David Zhang, Joseph Park +95 more

Type 2 Diabetes Partitioned Polygenic Scores Associate With Disease Outcomes in 454,193 Individuals Across 13 Cohorts

Diabetes Care(2022)10.2337/dc21-1395

N/A

1.6DataRank · unranked

68 citations

Jessica LeClair, Joanne B. Cole, Chloé Sarnowski, Fariba Ahmadizar, Lawrence F. Bielak +48 more

SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.02.130955

Top 13%

1.6DataRank

Top 13%24 citations

Rachel Sealfon, Sharon L. R. Kardia, Irwin Jungreis

Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster

Genome Research(2014)10.1101/gr.168807.113

N/A

1.6DataRank · unranked

34 citations

Christopher A. Bristow, Robert K. Arthur, Yanxiao Zhang, Anshul Kundaje, Nicolas Nègre +18 more

Model-based assessment of replicability for genome-wide association meta-analysis

Nature Communications(2021)10.1038/s41467-021-21226-z

N/A

1.5DataRank · unranked

40 citations

Yu Jiang, Mengzhen Liu, J. Dylan Weissenkampen, Scott A. Eckert, Lina Yang +125 more

Context influences on TALE–DNA binding revealed by quantitative profiling

Nature Communications(2015)10.1038/ncomms8440

N/A

1.5DataRank · unranked

35 citations

Luis A. Barrera, Deepak Reyon, Jeffry D. Sander, Sharon L. R. Kardia, J. Keith Joung +3 more

Primer-Directed Enzymatic Amplification of DNA with a Thermostable DNA Polymerase

Science(1988)10.1126/science.2448875

N/A

1.5DataRank · unranked

17134 citations

David H. Gelfand, Susanne Stoffel, Stephen J. Scharf, Russell Higuchi, Glenn T. Horn +4 more

Analysis of Genetically Regulated Gene Expression Identifies a Prefrontal PTSD Gene, SNRNP35, Specific to Military Cohorts

Cell Reports(2020)10.1016/j.celrep.2020.107716

N/A

1.4DataRank · unranked

68 citations

Chris Chatzinakos, Michael S. Breen, Jakob Hartmann, Torsten Klengel, Ana C. da Silva Almeida +40 more

Single-cell multi-cohort dissection of the schizophrenia transcriptome

Science(2024)10.1126/science.adg5136

N/A

1.3DataRank · unranked

125 citations

Shahin Mohammadi, José Dávila-Velderrain, Sivan Subburaju, Daniel Reed Tso, Makayla Hourihan +196 more

Interleukin-6 deficiency exacerbates Huntington’s disease model phenotypes

Molecular Neurodegeneration(2020)10.1186/s13024-020-00379-3

N/A

1.3DataRank · unranked

39 citations

Sergio Sebastian Pineda, Hyeseung Lee, Ruth Kulicke, Sharon L. R. Kardia, Myriam Heiman +1 more

Complete sequencing of ape genomes

Nature(2025)10.1038/s41586-025-08816-3

Top 16%

1.3DataRank

Top 16%128 citations

Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar +123 more

Network Infusion to Infer Information Sources in Networks

MURAL - Maynooth University Research Archive Library (National University of Ireland, Maynooth)(2016)10.48550/arxiv.1606.07383

N/A

1.3DataRank · unranked

15 citations

Muriel Médard, Richard Sandstrom, Sharon L. R. Kardia, Ken R. Duffy, Soheil Feizi

Alternatives to amyloid for Alzheimer's disease therapies—a symposium report

Annals of the New York Academy of Sciences(2020)10.1111/nyas.14371

N/A

1.3DataRank · unranked

13 citations

David M. Holtzman, Bradley T. Hyman, Malú Gámez Tansey, Marco Colonna, Sharon L. R. Kardia +8 more

Spectral Alignment of Graphs

IEEE Transactions on Network Science and Engineering(2020)10.1109/tnse.2019.2913233

N/A

1.3DataRank · unranked

36 citations

Richard Sandstrom, Mariana Recamonde-Mendoza, Sharon L. R. Kardia, Ali Jadbabaie, Muriel Médard +1 more

FRESCo: finding regions of excess synonymous constraint in diverse viruses

Genome Biology(2015)10.1186/s13059-015-0603-7

N/A

1.2DataRank · unranked

43 citations

Alireza Heravi-Moussavi, Irwin Jungreis, Maxim Y. Wolf, Sharon L. R. Kardia, Pardis C. Sabeti +1 more

Network Infusion to Infer Information Sources in Networks

IEEE Transactions on Network Science and Engineering(2019)10.1109/tnse.2018.2854218

N/A

1.2DataRank · unranked

22 citations

Richard Sandstrom, Sharon L. R. Kardia, Ken R. Duffy, Muriel Médard, Soheil Feizi

Single-cell transcriptomic analysis of Alzheimer’s disease

Nature(2019)10.1038/s41586-019-1195-2

N/A

1.2DataRank · unranked

2670 citations

Jose Davila-Velderrain, Zhuyu Peng, Fan Gao, Shahin Mohammadi, Jennie Z. Young +12 more

Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila

Cell(2007)10.1016/j.cell.2007.01.043

N/A

1.2DataRank · unranked

2579 citations

Alexei A. Aravin, Alexander Stark, Monica Dus, Sharon L. R. Kardia, Ravi Sachidanandam +2 more

Histone modifications at human enhancers reflect global cell-type-specific gene expression

Nature(2009)10.1038/nature07829

N/A

1.2DataRank · unranked

2569 citations

Gary C. Hon, R. David Hawkins, Yanxiao Zhang, Alexander Stark, Lindsey F. Harp +18 more

ChromHMM: automating chromatin-state discovery and characterization

Nature Methods(2012)10.1038/nmeth.1906

N/A

1.2DataRank · unranked

2372 citations

Sharon L. R. Kardia, Jason Ernst

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Genome Research(2012)10.1101/gr.136184.111

N/A

1.2DataRank · unranked

2212 citations

Georgi K. Marinov, Anshul Kundaje, Yanxiao Zhang, Florencia Pauli, Serafim Batzoglou +46 more

Massively parallel characterization of regulatory elements in the developing human cortex

Science(2024)10.1126/science.adh0559

N/A

1.2DataRank · unranked

61 citations

Sean Whalen, Marilyn Steyert, Ryan Ziffra, Pawel F. Przytycki, Fumitaka Inoue +197 more

Single-Nucleus Transcriptome Profiling of Dorsolateral Prefrontal Cortex: Mechanistic Roles for Neuronal Gene Expression, Including the 17q21.31 Locus, in PTSD Stress Response

American Journal of Psychiatry(2023)10.1176/appi.ajp.20220478

N/A

1.2DataRank · unranked

53 citations

Cameron D. Pernia, Filomene G. Morrison, Fumitaka Inoue, Kenneth M. McCullough, Heike Schuler +25 more

Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use

Nature Genetics(2019)10.1038/s41588-018-0307-5

N/A

1.1DataRank · unranked

2128 citations

Mengzhen Liu, HUNT All-In Psychiatry, Yu Jiang, Robbee Wedow, Yue Li +120 more

Wisdom of crowds for robust gene network inference

Nature Methods(2012)10.1038/nmeth.2016

N/A

1.1DataRank · unranked

1765 citations

Daniel Marbach, James C. Costello, Robert Küffner, Nicole M Vega, Robert J. Prill +5 more

Chromosome Xq23 is associated with lower atherogenic lipid concentrations and favorable cardiometabolic indices

Nature Communications(2021)10.1038/s41467-021-22339-1

N/A

1.1DataRank · unranked

51 citations

Akhil Pampana, Sarah E. Graham, Sanni Ruotsalainen, James A. Perry, Paul S. de Vries +95 more

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

Nature(2004)10.1038/nature02424

N/A

1.1DataRank · unranked

1554 citations

Bruce W. Birren, Matthew E. Hurles, Sharon L. R. Kardia

Leveraging single-cell ATAC-seq and RNA-seq to identify disease-critical fetal and adult brain cell types

Nature Communications(2024)10.1038/s41467-024-44742-0

N/A

1.1DataRank · unranked

44 citations

Buu Truong, Kushal K. Dey, Soumya Raychaudhuri, Sharon L. R. Kardia, Alkes L. Price +3 more

Evidence for a novel overlapping coding sequence in POLG initiated at a CUG start codon

BMC Genetics(2020)10.1186/s12863-020-0828-7

N/A

1.1DataRank · unranked

41 citations

Irwin Jungreis, James C. Wright, Shinichi Morishita, Jyoti Sharma Choudhary, Andrew E. Firth +2 more

High-resolution genome-wide functional dissection of transcriptional regulatory regions in human

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/193136

N/A

1.1DataRank · unranked

15 citations

Liang He, Sarah Goggin, Alham Saadat, Li Wang, Melina Claussnitzer +3 more

Discovery and Characterization of Chromatin States for Systematic Annotation of the Human Genome

Lecture Notes in Computer Science(2011)10.1007/978-3-642-20036-6_6

N/A

1.1DataRank · unranked

29 citations

Sharon L. R. Kardia, Jason Ernst

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

Nature(2009)10.1038/nature08064

N/A

1.1DataRank · unranked

1097 citations

Albert J. Vilella, Alireza Heravi-Moussavi, Manuel A. S. Santos, Sharadha Sakthikumar, Carol A. Munro +52 more

Loss of LDAH associated with prostate cancer and hearing loss

Human Molecular Genetics(2018)10.1093/hmg/ddy310

N/A

1.0DataRank · unranked

19 citations

Ming Chen, Richard C Sallari, Maura Cotter, Kristen E. Wong, Nahid G. Robertson +32 more

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

Bioinformatics(2011)10.1093/bioinformatics/btr209

N/A

1.0DataRank · unranked

1073 citations

Irwin Jungreis, Sharon L. R. Kardia, Alireza Heravi-Moussavi

Chromatin-state discovery and genome annotation with ChromHMM

Nature Protocols(2017)10.1038/nprot.2017.124

N/A

1.0DataRank · unranked

1039 citations

Sharon L. R. Kardia, Jason Ernst

Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters

Nature Genetics(2011)10.1038/ng.848

N/A

1.0DataRank · unranked

1003 citations

Yulei Wang, Alireza Heravi-Moussavi, Ashley K. Koegel, Yojiro Kotake, Gavin D. Grant +19 more

The Tissue-Specific lncRNA Fendrr Is an Essential Regulator of Heart and Body Wall Development in the Mouse

Developmental Cell(2013)10.1016/j.devcel.2012.12.012

N/A

1.0DataRank · unranked

1002 citations

Lars Wittler, Frederic Koch, Sandra Währisch, Arica Beisaw, Karol Macura +8 more

Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci

Nature Neuroscience(2014)10.1038/nn.3786

N/A

1.0DataRank · unranked

999 citations

Gyan Srivastava, Katie Lunnon, Jeremy Burgess, Leonard C. Schalkwyk, Lei Yu +27 more

HaploReg v4: systematic mining of putative causal variants, cell types, regulators and target genes for human complex traits and disease

Nucleic Acids Research(2015)10.1093/nar/gkv1340

N/A

1.0DataRank · unranked

974 citations

Sharon L. R. Kardia, Lucas D. Ward

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs

Development(2019)10.1242/dev.175265

N/A

1.0DataRank · unranked

33 citations

Philipp Wahle, Sascha Werner, Irwin Jungreis, Peter Menzel, Chinmay J. Shukla +7 more

Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

Nature(2013)10.1038/nature12894

N/A

1.0DataRank · unranked

916 citations

Meghan Zubradt, Stefan Washietl, Sharon L. R. Kardia, Jonathan S. Weissman, Silvi Rouskin

50,000 years of Evolutionary History of India: Insights from ~2,700 Whole Genome Sequences

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.15.580575

Top 20%

1.0DataRank

Top 20%26 citations

Laurits Skov, Nick Patterson, Wei Zhao, Yuk Yee Lueng, Gerard D. Schellenberg +8 more

Exercise training remodels inguinal white adipose tissue through adaptations in innervation, vascularization, and the extracellular matrix

Cell Reports(2023)10.1016/j.celrep.2023.112392

N/A

1.0DataRank · unranked

45 citations

Maria Vamvini, Jiekun Yang, Tiziana Caputo, Marcus Ho, Nicholas P. Carbone +17 more

Multi-tissue polygenic models for transcriptome-wide association studies

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/107623

N/A

1.0DataRank · unranked

17 citations

Abhishek Sarkar, Kunal Bhutani, Sharon L. R. Kardia, Yong‐Jin Park, Yongjin Park

RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo

Nature Genetics(2007)10.1038/ng.2007.26

N/A

0.998DataRank · unranked

772 citations

Alexander Stark, Sharon L. R. Kardia, Joung-Woo Hong, Sergei Nechaev, Karen Adelman +4 more

An endogenous small interfering RNA pathway in Drosophila

Nature(2008)10.1038/nature07007

N/A

0.985DataRank · unranked

708 citations

Colin D. Malone, Rui Zhou, Alexander Stark, Catherine Schlingeheyde, Monica Dus +8 more

Multiple knockout mouse models reveal lincRNAs are required for life and brain development

eLife(2013)10.7554/elife.01749

N/A

0.982DataRank · unranked

697 citations

Loyal A. Goff, Simona Lodato, Boyan Bonev, Abigail F. Groff, Chiara Gerhardinger +21 more

Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay

Nature Biotechnology(2012)10.1038/nbt.2137

N/A

0.978DataRank · unranked

677 citations

Anand Murugan, Xiaolan Zhang, Tiberiu Tesileanu, Li Wang, Peter Rogov +9 more

Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer’s disease

Nature(2015)10.1038/nature14252

N/A

0.968DataRank · unranked

634 citations

Andreas R. Pfenning, Hansruedi Mathys, Richard Sandstrom, Anshul Kundaje, Li-Huei Tsai +3 more

Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs

Genome Research(2007)10.1101/gr.6597907

N/A

0.964DataRank · unranked

617 citations

Alexander Stark, Wendy K. Johnston, Sharon L. R. Kardia, David P. Bartel, David M. MacAlpine +1 more

Target site specificity and in vivo complexity of the mammalian arginylome

Scientific Reports(2018)10.1038/s41598-018-34639-6

N/A

0.944DataRank · unranked

30 citations

Vikas Rao Pejaver, Geoffrey P. Dann, Max Y. Wolf, Sharon L. R. Kardia, Yun Huang +5 more

Interpreting noncoding genetic variation in complex traits and human disease

Nature Biotechnology(2012)10.1038/nbt.2422

N/A

0.941DataRank · unranked

528 citations

Sharon L. R. Kardia, Lucas D. Ward

Comparative Functional Genomics of the Fission Yeasts

Science(2011)10.1126/science.1203357

N/A

0.940DataRank · unranked

524 citations

Zehua Chen, Moran Yassour, Brian J. Haas, Naomi Habib, Ilan Wapinski +64 more

Constitutive nuclear lamina–genome interactions are highly conserved and associated with A/T-rich sequence

Genome Research(2012)10.1101/gr.141028.112

N/A

0.929DataRank · unranked

487 citations

Daan Peric-Hupkes, Jop Kind, Jean-Bernard Beaudry, Ludo Pagie, Sharon L. R. Kardia +7 more

APOE4 impairs myelination via cholesterol dysregulation in oligodendrocytes

Nature(2022)10.1038/s41586-022-05439-w

N/A

0.927DataRank · unranked

483 citations

Leyla Anne Akay, José Dávila-Velderrain, Djuna von Maydell, Hansruedi Mathys, Shawn M. Davidson +26 more

BRCA1 Recruitment to Transcriptional Pause Sites Is Required for R-Loop-Driven DNA Damage Repair

Molecular Cell(2015)10.1016/j.molcel.2015.01.011

N/A

0.924DataRank · unranked

473 citations

Konstantina Skourti-Stathaki, Steffen Ventz, Luca Pinello, Angela Yen, Kinga Kamieniarz-Gdula +13 more

N6-methyladenosine RNA modification regulates embryonic neural stem cell self-renewal through histone modifications

Nature Neuroscience(2018)10.1038/s41593-017-0057-1

N/A

0.917DataRank · unranked

452 citations

Yue Li, Minghui Yue, Jun Wang, Sandeep Kumar, Robert J. Wechsler-Reya +7 more

Single-cell multi-cohort dissection of the schizophrenia transcriptome

medRxiv(2022)10.1101/2022.08.31.22279406

Top 22%

0.913DataRank

Top 22%29 citations

Shahin Mohammadi, Prashant S. Emani, Jose Davila-Velderrain, Sivan Subburaju, Daniel Reed Tso +11 more

Comparative analysis of metazoan chromatin organization

Nature(2014)10.1038/nature13415

N/A

0.910DataRank · unranked

429 citations

Youngsook L. Jung, Tao Liu, Burak H. Alver, Soohyun Lee, Kohta Ikegami +83 more

Evolution of enhanced innate immune evasion by SARS-CoV-2

Nature(2021)10.1038/s41586-021-04352-y

N/A

0.900DataRank · unranked

402 citations

Mehdi Bouhaddou, Ann-Kathrin Reuschl, Lorena Zuliani-Alvarez, Benjamin J. Polacco, Adrian Pelin +41 more

A synthetic transcription platform for programmable gene expression in mammalian cells

Nature Communications(2022)10.1038/s41467-022-33287-9

N/A

0.897DataRank · unranked

31 citations

Leonid Gaidukov, Yong Lai, Ming-Ru Wu, Jicong Cao, Michael J. Gutbrod +11 more

Phylogenetic Identification and Functional Characterization of Orthologs and Paralogs across Human, Mouse, Fly, and Worm

bioRxiv (Cold Spring Harbor Laboratory)(2014)10.1101/005736

N/A

0.893DataRank · unranked

13 citations

Mukul S. Bansal, Albert J. Vilella, Javier Herrero, Sharon L. R. Kardia, Yi-Chieh Wu

Human microglial state dynamics in Alzheimer’s disease progression

Cell(2023)10.1016/j.cell.2023.08.037

N/A

0.893DataRank · unranked

384 citations

Matheus B. Victor, Yongjin P. Park, Xushen Xiong, Aine Ni Scannail, Gloria Suella Menchaca +14 more

Extensive Variation in Chromatin States Across Humans

Science(2013)10.1126/science.1242510

N/A

0.891DataRank · unranked

378 citations

Sofia Kyriazopoulou-Panagiotopoulou, Mark T. Groudine, Judith B. Zaugg, Anshul Kundaje, Yuling Liu +14 more

High-Throughput 5’ UTR Engineering for Enhanced Protein Production in Non-Viral Gene Therapies

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.24.006486

N/A

0.889DataRank · unranked

18 citations

Eva Maria Novoa, Zhizhuo Zhang, Dianbo Liu, Alan S L Wong, Claudia Wehrspaun +7 more

Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay

Genome Research(2013)10.1101/gr.144899.112

N/A

0.885DataRank · unranked

363 citations

Jason Ernst, Alexandre Melnikov, Peter Rogov, Li Wang, Xiaolan Zhang +5 more

Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid

Molecular Cell(2020)10.1016/j.molcel.2020.11.041

N/A

0.885DataRank · unranked

363 citations

Christine A. Roden, Mark A. Boerneke, Grace A. McLaughlin, Irwin Jungreis, Ethan J. Fritch +13 more

Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration

Nature Communications(2019)10.1038/s41467-019-12780-8

N/A

0.880DataRank · unranked

352 citations

Shahin Mohammadi, Jose Davila-Velderrain, Brittany A. Goods, Tanina D. Cadwell, Yu Xing +8 more

Effect of predicted protein-truncating genetic variants on the human transcriptome

Science(2015)10.1126/science.1261877

N/A

0.877DataRank · unranked

345 citations

Matti Pirinen, Donald F. Conrad, Monkol Lek, Emily K. Tsang, Konrad J. Karczewski +206 more

A Comprehensive Map of Insulator Elements for the Drosophila Genome

PLoS Genetics(2010)10.1371/journal.pgen.1000814

N/A

0.877DataRank · unranked

344 citations

Christopher D. Brown, Parantu K. Shah, Yanxiao Zhang, Carolyn A. Morrison, Philipp Kapranov +11 more

Combinatorial Patterning of Chromatin Regulators Uncovered by Genome-wide Location Analysis in Human Cells

Cell(2011)10.1016/j.cell.2011.09.057

N/A

0.872DataRank · unranked

334 citations

Alon Goren, Ido Amit, Noam Shoresh, Nir Yosef, Jason Ernst +12 more

Single-cell dissection of the human brain vasculature

Nature(2022)10.1038/s41586-022-04521-7

N/A

0.870DataRank · unranked

330 citations

Na Sun, Hyeseung Lee, Brianna Godlewski, Hansruedi Mathys, Kyriaki Galani +12 more

Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals

Genome Research(2014)10.1101/gr.165035.113

N/A

0.870DataRank · unranked

329 citations

Sharon L. R. Kardia, Manuel Garber, Stefan Washietl

Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites

Proceedings of the National Academy of Sciences(2007)10.1073/pnas.0701811104

N/A

0.864DataRank · unranked

316 citations

Tarjei S. Mikkelsen, Andreas Gnirke, Broad Institute Sequencing Platform and Whole Genome Assembly Team, Sharon L. R. Kardia, Matthew E. Hurles +2 more

Common Variants at 9p21 and 8q22 Are Associated with Increased Susceptibility to Optic Nerve Degeneration in Glaucoma

PLoS Genetics(2012)10.1371/journal.pgen.1002654

N/A

0.863DataRank · unranked

314 citations

Brian L. Yaspan, Michael A. Hauser, Jae H. Kang, R. Rand Allingham, Lana M. Olson +52 more

APOE4 disrupts intracellular lipid homeostasis in human iPSC-derived glia

Science Translational Medicine(2021)10.1126/scitranslmed.aaz4564

N/A

0.862DataRank · unranked

312 citations

Priyanka Narayan, Julia Maeve Bonner, Nora Kory, Sebastian Boland, Aleksandra A. Arczewska +14 more

An Epigenetic Signature for Monoallelic Olfactory Receptor Expression

Cell(2011)10.1016/j.cell.2011.03.040

N/A

0.860DataRank · unranked

308 citations

Angela Yen, Bradley M. Colquitt, E. Josephine Clowney, Eirene Markenscoff-Papadimitriou, Zoe A. Evans +8 more

Network deconvolution as a general method to distinguish direct dependencies in networks

Nature Biotechnology(2013)10.1038/nbt.2635

N/A

0.858DataRank · unranked

304 citations

Daniel Marbach, Muriel Médard, Sharon L. R. Kardia, Soheil Feizi

Network Motif Discovery Using Subgraph Enumeration and Symmetry-Breaking

Lecture notes in computer science(2007)10.1007/978-3-540-71681-5_7

N/A

0.858DataRank · unranked

304 citations

Sharon L. R. Kardia, Joshua A. Grochow

Whole-genome ChIP–chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo

Genes & Development(2007)10.1101/gad.1509607

N/A

0.855DataRank · unranked

298 citations

Robert P. Zinzen, Alexander Stark, Sharon L. R. Kardia, Hailan Zhang, Richard A. Young +2 more

Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer

Nature Biotechnology(2021)10.1038/s41587-021-01021-3

N/A

0.853DataRank · unranked

294 citations

Travis Law, Karl R. Clauser, Susan Klaeger, Siranush Sarkizova, François Aguet +24 more

Reconstruction of the human blood–brain barrier in vitro reveals a pathogenic mechanism of APOE4 in pericytes

Nature Medicine(2020)10.1038/s41591-020-0886-4

N/A

0.852DataRank · unranked

292 citations

Michael Bula, Jose Davila-Velderrain, Leyla Anne Akay, Lena Zhu, Alexander Frank +11 more

Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation

Neuron(2020)10.1016/j.neuron.2020.06.021

N/A

0.851DataRank · unranked

290 citations

Robert J. Fenster, Sergio Sebastian Pineda, Whitney S. Gibbs, Shahin Mohammadi, Jose Davila-Velderrain +12 more

Multisensory gamma stimulation promotes glymphatic clearance of amyloid

Nature(2024)10.1038/s41586-024-07132-6

N/A

0.847DataRank · unranked

282 citations

Cheng-Yi Yang, Na Sun, Ping-Chieh Pao, Cristina Blanco-Duque, Martin C. Kahn +22 more

A Bayesian approach to mediation analysis predicts 206 causal target genes in Alzheimer’s disease

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/219428

N/A

0.829DataRank · unranked

14 citations

Lucas D. Ward, Liang He, José Dávila-Velderrain, Philip L. De Jager, Sharon L. R. Kardia +2 more

Evidence of efficient stop codon readthrough in four mammalian genes

Nucleic Acids Research(2014)10.1093/nar/gku608

N/A

0.827DataRank · unranked

247 citations

Ming-Yuan Chou, Ivaylo P. Ivanov, Irwin Jungreis, Sharon L. R. Kardia, Pavel V. Baranov +3 more

RFECS: A Random-Forest Based Algorithm for Enhancer Identification from Chromatin State

PLoS Computational Biology(2013)10.1371/journal.pcbi.1002968

N/A

0.826DataRank · unranked

245 citations

Wei Xie, Yan Li, Uli Wagner, Wei Wang, Momoe Kato +5 more

Evidence of abundant stop codon readthrough in Drosophila and other metazoa

Genome Research(2011)10.1101/gr.119974.110

N/A

0.825DataRank · unranked

243 citations

Alireza Heravi-Moussavi, Rebecca Spokony, Clara S. Chan, Richard S. Sandstrom, Alec Victorsen +4 more

Joint profiling of DNA methylation and chromatin architecture in single cells

Nature Methods(2019)10.1038/s41592-019-0502-z

N/A

0.825DataRank · unranked

243 citations

Yaping Liu, Yanxiao Zhang, Naoki Kubo, Miao Yu, Rongxin Fang +3 more

Single-Cell Dissection of Schizophrenia Reveals Neurodevelopmental-Synaptic Link and Transcriptional Resilience Associated Cellular State

Biological Psychiatry(2021)10.1016/j.biopsych.2021.02.273

N/A

0.824DataRank · unranked

26 citations

Shahin Mohammadi, Jose Davila-Velderrain, Sivan Subburaju, Reed Tso, Makayla Hourihan +3 more

CoCoA-diff: counterfactual inference for single-cell gene expression analysis

Genome Biology(2021)10.1186/s13059-021-02438-4

N/A

0.823DataRank · unranked

20 citations

Sharon L. R. Kardia, Yongjin P. Park

Comparative analysis of regulatory information and circuits across distant species

Nature(2014)10.1038/nature13668

N/A

0.818DataRank · unranked

232 citations

Carlos L. Araya, Cathleen Brdlik, Philip Cayting, Chao Cheng, Yong Cheng +40 more

Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases

Scientific Reports(2015)10.1038/srep15145

N/A

0.811DataRank · unranked

222 citations

Tao Huang, Francesca Petralia, Quan Long, Bin Zhang, Carmen Argmann +128 more

Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss

Bioinformatics(2012)10.1093/bioinformatics/bts225

N/A

0.810DataRank · unranked

221 citations

Eric J. Alm, Sharon L. R. Kardia, Mukul S. Bansal

A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands

Genes & Development(2008)10.1101/gad.1613108

N/A

0.809DataRank · unranked

219 citations

Natascha Bushati, Calvin H. Jan, Yanxiao Zhang, Emily Hodges, Julius Brennecke +4 more

Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease

Cell(2021)10.1016/j.cell.2021.03.050

N/A

0.804DataRank · unranked

212 citations

Daniel C. Nachun, Nicole M. Ferraro, Michael J. Gloudemans, Abhiram S. Rao, Craig Smail +168 more

Human Primordial Germ Cells Are Specified from Lineage-Primed Progenitors

Cell Reports(2019)10.1016/j.celrep.2019.11.083

N/A

0.796DataRank · unranked

201 citations

Na Sun, Lei Hou, Rachel Kim, Jared Faith, Marianna Aslanyan +9 more

Discovery of Human sORF-Encoded Polypeptides (SEPs) in Cell Lines and Tissue

Journal of Proteome Research(2014)10.1021/pr401280w

N/A

0.795DataRank · unranked

199 citations

Carl C. Ward, Irwin Jungreis, Sarah A. Slavoff, Adam G. Schwaid, John Neveu +6 more

Distinct metabolic programs established in the thymus control effector functions of γδ T cell subsets in tumor microenvironments

Nature Immunology(2021)10.1038/s41590-020-00848-3

N/A

0.791DataRank · unranked

194 citations

Claire McIntyre, Stefania Martin, Mathilde Raverdeau, Nital Sumaria, Ayano C. Kohlgruber +19 more

Diversifying Sparsity Using Variational Determinantal Point Processes

arXiv (Cornell University)(2014)10.48550/arxiv.1411.6307

N/A

0.789DataRank · unranked

10 citations

Richard Sandstrom, Alex Kulesza, Sharon L. R. Kardia, Polina Golland, Luke Bornn +1 more

Unified modeling of gene duplication, loss, and coalescence using a locus tree

Genome Research(2012)10.1101/gr.123901.111

N/A

0.785DataRank · unranked

187 citations

Sharon L. R. Kardia, Albert J. Vilella

The NF-κB Genomic Landscape in Lymphoblastoid B Cells

Cell Reports(2014)10.1016/j.celrep.2014.07.037

N/A

0.775DataRank · unranked

174 citations

Luis A. Barrera, Ina Ersing, Bradford Willox, Stefanie C.S. Schmidt, Hannah Greenfeld +12 more

Rate of brain aging and APOE ε4 are synergistic risk factors for Alzheimer’s disease

Life Science Alliance(2019)10.26508/lsa.201900303

N/A

0.750DataRank · unranked

16 citations

Andreas R. Pfenning, Sam S Lee, David A. Bennett, Etienne L Sibille, Sharon L. R. Kardia +3 more

Single-cell dissection of the human cerebrovasculature in health and disease

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.26.440975

N/A

0.748DataRank · unranked

13 citations

Na Sun, Hyeseung Lee, Brianna Godlewski, Kyriaki Galani, Julio Mantero +7 more

Best practices for genome-wide RNA structure analysis: combination of mutational profiles and drop-off information

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/176883

N/A

0.744DataRank · unranked

14 citations

Jean-Denis Beaudoin, John S. Mattick, Sharon L. R. Kardia, Antonio J. Giráldez, Eva Maria Novoa

Antigen presenting cells in cancer immunity and mediation of immune checkpoint blockade

Clinical & Experimental Metastasis(2024)10.1007/s10585-023-10257-z

N/A

0.743DataRank · unranked

31 citations

Lee Chen, Doris Fu, Wendi Liu, Anusha Puri, Sharon L. R. Kardia +2 more

Few SINEs of life: Alu elements have little evidence for biological relevance despite elevated translation

NAR Genomics and Bioinformatics(2019)10.1093/nargab/lqz023

N/A

0.738DataRank · unranked

24 citations

Federico Abascal, Irwin Jungreis, Fernando Pozo, Sharon L. R. Kardia, Shinichi Morishita +4 more

Correction: Evolutionary principles of modular gene regulation in yeasts

eLife(2013)10.7554/elife.01114

N/A

0.734DataRank · unranked

13 citations

Sushmita Roy, Mark P. Styczynski, Jenna Pfiffner, Courtney French, Amanda Socha +11 more

Lateral mammillary body neurons in mouse brain are disproportionately vulnerable in Alzheimer’s disease

Science Translational Medicine(2023)10.1126/scitranslmed.abq1019

N/A

0.731DataRank · unranked

24 citations

Zhuyu Peng, Mitchell H. Murdock, Andrea Spitaleri, Hansruedi Mathys, José Dávila-Velderrain +10 more

Mathematical analysis of Córdoba calcifediol trial suggests strong role for Vitamin D in reducing ICU admissions of hospitalized COVID-19 patients

medRxiv(2020)10.1101/2020.11.08.20222638

N/A

0.731DataRank · unranked

12 citations

Sharon L. R. Kardia, Irwin Jungreis

Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets

Nature Communications(2020)10.1038/s41467-020-18320-z

N/A

0.695DataRank · unranked

22 citations

Deniz Yorukoglu, Lillian Zhang, Sarah K. Nyquist, Alex K. Shalek, Sharon L. R. Kardia +4 more

SwiSpot: modeling riboswitches by spotting out switching sequences

Bioinformatics(2016)10.1093/bioinformatics/btw401

N/A

0.695DataRank · unranked

12 citations

Eva Maria Novoa, Sharon L. R. Kardia, Alessio Bechini, Marco Barsacchi

Single-cell deconvolution of 3,000 post-mortem brain samples for eQTL and GWAS dissection in mental disorders

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.21.426000

N/A

0.693DataRank · unranked

15 citations

Liang He, Jose Davila-Velderrain, Lei Hou, Shahin Mohammadi, Hansruedi Mathys +6 more

The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

Genome Biology(2023)10.1186/s13059-023-02915-y

N/A

0.692DataRank · unranked

17 citations

Carles B. Adsera, Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang +46 more

Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery

Nature Neuroscience(2024)10.1038/s41593-024-01806-0

N/A

0.691DataRank · unranked

29 citations

Gonçalo Castelo-Branco, Fei Chen, Simone Codeluppi, M. Ryan Corces, Jean Fan +26 more

TreeFix: Statistically Informed Gene Tree Error Correction Using Species Trees

Systematic Biology(2012)10.1093/sysbio/sys076

N/A

0.689DataRank · unranked

98 citations

Albert J. Vilella, Mukul S. Bansal, Sharon L. R. Kardia, Yi-Chieh Wu

Leveraging single-cell ATAC-seq to identify disease-critical fetal and adult brain cell types

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.20.445067

N/A

0.646DataRank · unranked

11 citations

Kushal K. Dey, Soumya Raychaudhuri, Sharon L. R. Kardia, Alkes L. Price, Karthik A. Jagadeesh +2 more

Pareto-optimal phylogenetic tree reconciliation

Bioinformatics(2014)10.1093/bioinformatics/btu289

N/A

0.624DataRank · unranked

63 citations

Yi-Chieh Wu, Mukul S. Bansal, Sharon L. R. Kardia, Ran Libeskind-Hadas

ncdDetect2: improved models of the site-specific mutation rate in cancer and driver detection with robust significance evaluation

Bioinformatics(2018)10.1093/bioinformatics/bty511

N/A

0.623DataRank · unranked

10 citations

Francesco Marabita, Manaswi Gupta, Johanna Bertl, Nobuyoshi Hiraoka, Sharon L. R. Kardia +2 more

Signals in the Cells: Multimodal and Contextualized Machine Learning Foundations for Therapeutics

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.12.598655

Top 32%

0.621DataRank

Top 32%14 citations

Xiang Lin, Michelle M. Li, Kexin Huang, Wenhao Gao, Tianfan Fu +4 more

Reconciliation Revisited: Handling Multiple Optima When Reconciling with Duplication, Transfer, and Loss

Lecture Notes in Computer Science(2013)10.1007/978-3-642-37195-0_1

N/A

0.600DataRank · unranked

4 citations

Eric J. Alm, Sharon L. R. Kardia, Mukul S. Bansal

PhyloCSF: a comparative genomics method to distinguish protein-coding and non-coding regions

Nature Precedings(2010)10.1038/npre.2010.4784.1

N/A

0.594DataRank · unranked

11 citations

Irwin Jungreis, Sharon L. R. Kardia, Michael Lin

Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

eLife(2024)10.7554/elife.87866

N/A

0.590DataRank · unranked

17 citations

Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T. J. van Velthoven, Na Sun +6 more

Complete sequencing of ape genomes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.31.605654

Top 34%

0.582DataRank

Top 34%26 citations

Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar +123 more

Whole genome sequence association analysis of fasting glucose and fasting insulin levels in diverse cohorts from the NHLBI TOPMed program

Communications Biology(2022)10.1038/s42003-022-03702-4

Top 34%

0.582DataRank

Top 34%16 citations

Sheila M. Gaynor, Emily M. Russell, Kenneth E. Westerman, Laura M. Raffield, Timothy D. Majarian +88 more

Computational analysis of noncoding RNAs

WIREs RNA(2012)10.1002/wrna.1134

N/A

0.581DataRank · unranked

47 citations

Sebastian Will, David A. Hendrix, Loyal A. Goff, John L. Rinn, Bonnie Berger +2 more

A polygenic score method boosted by non-additive models

Nature Communications(2024)10.1038/s41467-024-48654-x

N/A

0.577DataRank · unranked

16 citations

Yosuke Tanigawa, Yuta Suzuki, Sharon L. R. Kardia, Shinichi Morishita, Rikifumi Ohta

Sex differences in oncogenic mutational processes

White Rose Research Online (University of Leeds, The University of Sheffield, University of York)(2020)10.17863/cam.57292

N/A

0.564DataRank · unranked

7 citations

Stephenie D. Prokopec, Hong Su, Fouad Yousif, Nathaniel Schmitz, Paul C. Boutros +11 more

Evolution at the Subgene Level: Domain Rearrangements in the Drosophila Phylogeny

Molecular Biology and Evolution(2011)10.1093/molbev/msr222

N/A

0.557DataRank · unranked

40 citations

M. D. Rasmussen, Yi‐Chun Wu, Sharon L. R. Kardia, Y.-C. Wu

RiVIERA-beta: Joint Bayesian inference of risk variants and tissue-specific epigenomic enrichments across multiple complex human diseases

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/059329

N/A

0.542DataRank · unranked

4 citations

Sharon L. R. Kardia, Yue Li

Transcriptomic and spatial dissection of human ex vivo right atrial tissue reveals proinflammatory microvascular changes in ischemic heart disease

Cell Reports Medicine(2024)10.1016/j.xcrm.2024.101556

N/A

0.538DataRank · unranked

16 citations

Eloi Schmauch, Kyriakitsa Galani, Johannes Ojanen, Carles B. Adsera, Tiit Örd +26 more

An autoimmune transcriptional circuit drives FOXP3 + regulatory T cell dysfunction

Science Translational Medicine(2024)10.1126/scitranslmed.adp1720

N/A

0.534DataRank · unranked

20 citations

Matthew R. Lincoln, Liang He, Yongjin P. Park, Mineto Ota, Akiko Oguchi +12 more

Erratum: Corrigendum: Network deconvolution as a general method to distinguish direct dependencies in networks

Nature Biotechnology(2015)10.1038/nbt0415-424

N/A

0.530DataRank · unranked

11 citations

Daniel Marbach, Muriel Médard, Sharon L. R. Kardia, Soheil Feizi

SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes

Research Square(2020)10.21203/rs.3.rs-80345/v1

Top 37%

0.527DataRank

Top 37%9 citations

Rachel Sealfon, Sharon L. R. Kardia, Irwin Jungreis

The single-cell opioid responses in the context of HIV (SCORCH) consortium

Molecular Psychiatry(2024)10.1038/s41380-024-02620-7

N/A

0.526DataRank · unranked

16 citations

Rianne R. Campbell, Mary Kay Lobo, Joseph P. Receveur, Kriti Agrawal, Alejandra Borjabad +81 more

Deep phenotyping and genomic data from a nationally representative study on dementia in India

Scientific Data(2023)10.1038/s41597-023-01941-6

Top 37%

0.516DataRank

Top 37%20 citations

Sarah Petrosyan, Pranali Khobragade, Joyita Banerjee, Sandy Chien, Bas Weerman +51 more

Crosstalk between epitranscriptomic and epigenomic modifications and its implication in human diseases

Cell Genomics(2024)10.1016/j.xgen.2024.100605

N/A

0.502DataRank · unranked

15 citations

Kexuan Chen, Qianchen Fang, Shaohui Shi, Jiuhong Nan, Jialin He +9 more

A probabilistic framework to dissect functional cell-type-specific regulatory elements and risk loci underlying the genetics of complex traits

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/059345

N/A

0.473DataRank · unranked

8 citations

Jose Davila-Velderrain, Sharon L. R. Kardia, José Dávila-Velderrain, Yue Li

Integrative analysis of 10,000 epigenomic maps across 800 samples for regulatory genomics and disease dissection

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/810291

Top 41%

0.466DataRank

Top 41%10 citations

Yongjin P. Park, Wouter Meuleman, Sharon L. R. Kardia, Yongjin Park, Carles B. Adsera

A partnership of the lipid scramblase XK and of the lipid transfer protein VPS13A at the plasma membrane

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.30.486314

N/A

0.465DataRank · unranked

7 citations

Yumei Wu, Sergio Sebastian Pineda, Francisco J. Garcia, Julia N. Eisen, Marianna Leonzino +6 more

Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/182642

N/A

0.464DataRank · unranked

6 citations

B. F. Francis Ouellette, Nicholas A Sinnott-Armstrong, Michał P. Świtnicki, Malene Juul, Francesco Marabita +8 more

ABCA7 Loss-of-Function Variants Impact Phosphatidylcholine Metabolism in the Human Brain

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.05.556135

N/A

0.463DataRank · unranked

9 citations

Shannon Wright, Ping-Chieh Pao, Colin Staab, Oisín King, Andrea Spitaleri +14 more

Neurons burdened by DNA double strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.23.474002

N/A

0.462DataRank · unranked

8 citations

Carles B. Adsera, Eloi Schmauch, José Dávila-Velderrain, Matheus B. Victor, Vishnu Dileep +9 more

Conserved epigenetic regulatory logic infers genes governing cell identity

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/635516

N/A

0.457DataRank · unranked

8 citations

Enakshi Sinniah, Jun Xu, Burcu Vitrinel, Michael Alexanian, Gaia Andreoletti +17 more

A multiresolution framework to characterize single-cell state landscapes

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/746339

N/A

0.453DataRank · unranked

8 citations

Jose Davila-Velderrain, Sharon L. R. Kardia, José Dávila-Velderrain, Shahin Mohammadi

Heterologous Stop Codon Readthrough of Metazoan Readthrough Candidates in Yeast

PLoS ONE(2013)10.1371/journal.pone.0059450

N/A

0.440DataRank · unranked

8 citations

Irwin Jungreis, Sharon L. R. Kardia, Clara S. Chan

Mature and migratory dendritic cells promote immune infiltration and response to anti-PD-1 checkpoint blockade in metastatic melanoma

Nature Communications(2025)10.1038/s41467-025-62878-5

N/A

0.438DataRank · unranked

13 citations

Cassia Wang, Doris Fu, Marcus Ho, Kyriakitsa Galani, Lee Chen +21 more

Multi-omics analysis of a pig-to-human decedent kidney xenotransplant

Nature(2025)10.1038/s41586-025-09846-7

N/A

0.437DataRank · unranked

16 citations

Brian D. Piening, Alexa K. Dowdell, Maedeh Mohebnasab, Simon H. Williams, Alexey Stukalov +71 more

APOE4 impairs myelination via cholesterol dysregulation in oligodendrocytes

Alzheimer's & Dementia(2023)10.1002/alz.071948

N/A

0.432DataRank · unranked

10 citations

Joel Blanchard, Djuna K Von Maydell, Sharon L. R. Kardia, Jose Davila, Leyla Anne Akay +3 more

Large-scale discovery and validation of functional elements in the human genome.

Genome Biology(2005)10.1186/gb-2005-6-3-312

N/A

0.431DataRank · unranked

6 citations

Sharon L. R. Kardia, Louis Philip Benoit Bouvrette

Deep learning prediction of ribosome profiling with Translatomer reveals translational regulation and interprets disease variants

Nature Machine Intelligence(2024)10.1038/s42256-024-00915-6

N/A

0.416DataRank · unranked

9 citations

Lei Xiong, Shaohui Shi, Chengyu Li, Kexuan Chen, Qianchen Fang +9 more

Single-cell RNA sequencing data imputation using bi-level feature propagation

Briefings in Bioinformatics(2024)10.1093/bib/bbae209

N/A

0.414DataRank · unranked

6 citations

Sukwon Yun, Yeongmin Kim, Tianlong Chen, Sharon L. R. Kardia, Chanyoung Park +1 more

Simultaneous profiling of DNA methylation and chromatin architecture in mixed populations and in single cells

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/470963

N/A

0.404DataRank · unranked

4 citations

Yaping Liu, Yanxiao Zhang, Rongxin Fang, Sharon L. R. Kardia, Simona Volpi +1 more

Evidence for secondary-variant genetic burden and non-random distribution across biological modules in a recessive ciliopathy

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/362707

N/A

0.403DataRank · unranked

4 citations

Onuralp Söylemez, Aysegül Ozanturk, Sebastian Akle, Irwin Jungreis, Jean Muller +16 more

Genome-Wide Association Study of Cardiac Structure and Systolic Function in African Americans: The Candidate Gene Association Resource (CARe) Study

UNC Libraries(2020)10.17615/r6f9-4t91

Top 46%

0.402DataRank

Top 46%6 citations

Ramachandran S. Vasan, Nicole L. Glazer, Susan R. Heckbert, Abdullah Kutlar, Thomas H. Mosley +32 more

Cardiovascular disease causes proinflammatory microvascular changes in the human right atrium

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.23.449672

N/A

0.396DataRank · unranked

6 citations

Eloi Schmauch, Kyriakitsa Galani, Johannes Ojanen, Carles B. Adsera, Tiit Örd +26 more

Author Correction: APOE4 impairs myelination via cholesterol dysregulation in oligodendrocytes

Nature(2024)10.1038/s41586-024-08434-5

N/A

0.394DataRank · unranked

7 citations

Leyla Anne Akay, José Dávila-Velderrain, Djuna von Maydell, Hansruedi Mathys, Shawn M. Davidson +26 more

ProCyon: A multimodal foundation model for protein phenotypes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.10.627665

N/A

0.391DataRank · unranked

8 citations

Yepeng Huang, Robert Calef, Valentina Giunchiglia, Tianlong Chen, George Dasoulas +19 more

Translon: a single term for translated regions

Nature Methods(2025)10.1038/s41592-025-02810-3

N/A

0.389DataRank · unranked

11 citations

Jack A. S. Tierney, M. Mar Albà, Dmitry E. Andreev, Julie L. Aspden, John F. Atkins +164 more

Overcoming resistance to immunotherapy by targeting CD38 in human tumor explants

Cell Reports Medicine(2025)10.1016/j.xcrm.2025.102210

N/A

0.382DataRank · unranked

9 citations

Angelina M. Cicerchia, Ofir Shorer, Claire A. Palin, Boryana Petrova, Seth Anderson +50 more

Author Correction: Reconstruction of the human blood–brain barrier in vitro reveals a pathogenic mechanism of APOE4 in pericytes

Nature Medicine(2021)10.1038/s41591-021-01250-8

N/A

0.372DataRank · unranked

5 citations

Michael Bula, Jose Davila-Velderrain, Leyla Anne Akay, Lena Zhu, Alexander Frank +11 more

New approaches for understanding the potential role of microbes in Alzheimer's disease

Brain, Behavior, & Immunity - Health(2024)10.1016/j.bbih.2024.100743

N/A

0.372DataRank · unranked

7 citations

William A. Banks, Monica M. Diaz, Bess Frost, Sharon L. R. Kardia, Richard Lathe +7 more

SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings

Lecture Notes in Computer Science(2010)10.1007/978-3-642-12683-3_2

N/A

0.371DataRank · unranked

7 citations

Sharon L. R. Kardia, Ferhat Ay

Causal Mediation Analysis Leveraging Multiple Types of Summary Statistics Data

arXiv (Cornell University)(2019)10.48550/arxiv.1901.08540

N/A

0.357DataRank · unranked

4 citations

Abhishek Sarkar, Khoi Nguyen, Sharon L. R. Kardia, Yong‐Jin Park

Molecular hallmarks of excitatory and inhibitory neuronal resilience to Alzheimer’s disease

Molecular Neurodegeneration(2025)10.1186/s13024-025-00892-3

N/A

0.350DataRank · unranked

9 citations

Pourya Naderi Yeganeh, Carles B. Adsera, Sarah L. Morgan, Hansruedi Mathys, Dmitry Prokopenko +17 more

QClus: A droplet-filtering algorithm for enhanced snRNA-seq data quality in challenging samples

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.21.513315

N/A

0.342DataRank · unranked

3 citations

Johannes Ojanen, Kyriakitsa Galani, Juho Jalkanen, Kristiina Harju, Maija Hollmén +10 more

Single-cell mosaicism analysis reveals cell-type-specific somatic mutational burden in Alzheimer’s Dementia

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.21.489103

N/A

0.341DataRank · unranked

6 citations

Carles B. Adsera, Yongjin P. Park, Hansruedi Mathys, Samuel Sledzieski, Zhuyu Peng +4 more

Structural variant selection for high-altitude adaptation using single-molecule long-read sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.27.436702

N/A

0.341DataRank · unranked

3 citations

Zhilong Jia, Xiaojing Zhao, Jinxiu Sun, Fan Liang, Minsung Park +20 more

Loose ends: almost one in five human genes still have unresolved coding status

Nucleic Acids Research(2018)10.1093/nar/gky1146

N/A

0.339DataRank · unranked

4 citations

David Juan, Irwin Jungreis, Sharon L. R. Kardia, Laura Martinez-Gomez, Maria Rigau +7 more

Single-cell multi-region dissection of brain vasculature in Alzheimer’s Disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.09.479797

N/A

0.338DataRank · unranked

5 citations

Leyla Anne Akay, Mitchell H. Murdock, Yongjin P. Park, Adele Bubnys, Kyriaki Galani +7 more

Phylogenomic Approach to the Evolutionary Dynamics of Gene Duplication in Birds

Evolution after Gene Duplication(2010)10.1002/9780470619902.ch14

N/A

0.327DataRank · unranked

6 citations

Albert J. Vilella, Maude W. Baldwin, Sharon L. R. Kardia, Scott V. Edwards, Chris L. Organ

Conflicting and Ambiguous Names of Overlapping ORFs in SARS-CoV-2: A Homology-Based Resolution

Preprints.org(2020)10.20944/preprints202012.0048.v1

N/A

0.327DataRank · unranked

5 citations

Chase W. Nelson, Zachary Ardern, Yaara Finkel, Nevan J. Krogan, Kei Sato +8 more

Engineered 3D immuno-glial-neurovascular human miBrain model

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2511596122

N/A

0.320DataRank · unranked

7 citations

Adele Bubnys, Emre Agbas, Dong Shin Park, Alan Jiang, Rebecca L. Pinals +16 more

An expanded reference catalog of translated open reading frames for biomedical research

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.03.662928

Top 53%

0.319DataRank

Top 53%7 citations

Jorge Ruiz-Orera, Jack A. S. Tierney, Jim Clauwaert, Eric W. Deutsch, M. Mar Albà +41 more

The critical role of isomiRs in accurate differential expression analysis of miRNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.28.587190

N/A

0.317DataRank · unranked

5 citations

Yassine Attia, Pia Laitinen, Tiia A. Turunen, Piia Bartos, Mari-Anna Vaananen +7 more

Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorization

Nucleic Acids Research(2019)10.1093/nar/gkz538

N/A

0.314DataRank · unranked

5 citations

Jose Davila-Velderrain, Zhizhuo Zhang, Sharon L. R. Kardia, José Dávila-Velderrain, Dianbo Liu

Enhancer Reprogramming in Melanoma Immune Checkpoint Therapy Resistance

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.31.506051

N/A

0.300DataRank · unranked

4 citations

Alvin Shi, Ming Tang, Marcus Ho, Christopher Terranova, Kyriaki Galani +36 more

Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

(2023)10.7554/elife.87866.1

N/A

0.296DataRank · unranked

5 citations

Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T. J. van Velthoven, Na Sun +6 more

Hierarchical Interpretation of Out-of-Distribution Cells Using Bottlenecked Transformer

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.17.628533

N/A

0.296DataRank · unranked

4 citations

He Zhu, Yiwen Hu, Yanjie Chen, Yuwei Wang, Xuegong Zhang +7 more

Integrating single-cell RNA-seq datasets with substantial batch effects

BMC Genomics(2025)10.1186/s12864-025-12126-3

N/A

0.294DataRank · unranked

5 citations

Amir Ali Moinfar, Luke Zappia, Shrey Parikh, Alejandro Tejada-Lapuerta, Benjamin J. Lengerich +3 more

Disrupting CD38-driven T cell dysfunction restores sensitivity to cancer immunotherapy

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.12.579184

N/A

0.290DataRank · unranked

5 citations

Angelina M. Cicerchia, Ofir Shorer, Boryana Petrova, Seth Anderson, Joshua Park +48 more

Cellular intelligence: dynamic specialization through non-equilibrium multi-scale compartmentalization

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.25.449951

N/A

0.289DataRank · unranked

4 citations

Leandro Z. Agudelo, Soumya P. Ram, Anjanet Loon, Burak Kutlu, Kevin Grove +3 more

P4‐126: Genome‐wide exploration of DNA methylation in the aging brain and its relation to Alzheimer's disease

Alzheimer's & Dementia(2012)10.1016/j.jalz.2012.05.1829

N/A

0.278DataRank · unranked

4 citations

Gyan Srivastava, Richard S. Sandstrom, Fangeng Zou, High Song, Curtis Younkin +13 more

Publisher Correction: Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries

Nature Communications(2020)10.1038/s41467-020-15236-6

Top 57%

0.275DataRank

Top 57%2 citations

Sanni Ruotsalainen, Robert E. Handsaker, Maris Alver, Jonathan M. Bloom, Timothy Poterba +442 more

Single-cell dissection of obesity-exercise axis in adipose-muscle tissues

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.22.469622

N/A

0.257DataRank · unranked

4 citations

Maria Vamvini, Pasquale Nigro, Marcus Ho, Kiki Galani, Marcus Alvarez +11 more

FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNA

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.02.573710

N/A

0.250DataRank · unranked

3 citations

Sarah C. Reed, Christopher Lo, Atish D. Choudhury, Heather A. Parsons, Daniel G. Stover +12 more

Author Correction: Single-nucleus multiregion transcriptomic analysis of brain vasculature in Alzheimer’s disease

Nature Neuroscience(2023)10.1038/s41593-023-01507-0

N/A

0.247DataRank · unranked

3 citations

Leyla Anne Akay, Mitchell H. Murdock, Yongjin P. Park, Fabiola Galiana-Melendez, Adele Bubnys +8 more

Multisensory gamma stimulation enhances adult neurogenesis and improves cognitive function in male mice with Down Syndrome

PLOS One(2025)10.1371/journal.pone.0317428

N/A

0.245DataRank · unranked

4 citations

Brennan Jackson, Maeesha Tasnim Naomi, Noah Tan, Mitchell Murdock, Dong Shin Park +14 more

Evidence of a recombination rate valley in human regulatory domains

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/048827

N/A

0.244DataRank · unranked

3 citations

Abhishek Sarkar, Sharon L. R. Kardia, Yaping Liu

Contextualized: Heterogeneous Modeling Toolbox

Journal of Open Source Software(2024)10.21105/joss.06469

N/A

0.241DataRank · unranked

4 citations

Benjamin J. Lengerich, Wesley Lo, Aaron Alvarez, Andrea Rubbi, Sharon L. R. Kardia +4 more

Stratified analysis identifies HIF-2 α as a therapeutic target for highly immune-infiltrated melanomas

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.29.620300

N/A

0.231DataRank · unranked

3 citations

Kelly P. Burke, Ryan Porter, Lynn Meiger, Peter Fatouros, Jiekun Yang +24 more

Erratum to: Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits

Molecular Biology and Evolution(2021)10.1093/molbev/msab100

N/A

0.228DataRank · unranked

3 citations

Jiaxing Huang, Yun Wang, Xiaomeng Zhao, Long Su, Mengya Zhao +43 more

Death by Round Numbers: Glass-Box Machine Learning Uncovers Biases in Medical Practice

medRxiv(2022)10.1101/2022.04.30.22274520

N/A

0.224DataRank · unranked

3 citations

Rich Caruana, Mark E. Nunnally, Sharon L. R. Kardia, Benjamin J. Lengerich

Contextualized Machine Learning

arXiv (Cornell University)(2023)10.48550/arxiv.2310.11340

N/A

0.223DataRank · unranked

3 citations

Caleb N. Ellington, Andrea Rubbi, Sharon L. R. Kardia, Eric P. Xing, Benjamin J. Lengerich

Immune genes outside immune cells for multiple sclerosis

Neuron(2022)10.1016/j.neuron.2022.03.017

N/A

0.222DataRank · unranked

3 citations

Sharon L. R. Kardia, Na Sun

Plasma-derived exosomal analysis and deconvolution enables prediction and tracking of melanoma checkpoint blockade response

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/809699

N/A

0.219DataRank · unranked

2 citations

Gyulnara G. Kasumova, William A. Michaud, Jessica Cintolo-Gonzales, Marta Díaz Martínez, Jacqueline Ohmura +12 more

Molecular hallmarks of excitatory and inhibitory neuronal resilience and resistance to Alzheimer’s disease

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.13.632801

N/A

0.216DataRank · unranked

3 citations

Pourya Naderi Yeganeh, Carles B. Adsera, Sarah L. Morgan, Hansruedi Mathys, Dmitry Prokopenko +16 more

QClus: a droplet filtering algorithm for enhanced snRNA-seq data quality in challenging samples

Nucleic Acids Research(2024)10.1093/nar/gkae1145

N/A

0.208DataRank · unranked

3 citations

Johannes Ojanen, Kyriakitsa Galani, Juho Jalkanen, Kristiina Harju, Maija Hollmén +10 more

Intraspecific sequence variation and complete genomes refine the identification of rapidly evolved regions in humans

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.20.683446

Top 65%

0.208DataRank

Top 65%3 citations

Riley J. Mangan, Seth Weaver, Sarah A. Zhao, Federica Mosti, Michael C. Thomas +5 more

Integrative Multi-omic Profiling of Two Human Decedents Receiving Pig Heart Xenografts Reveals Strong Perturbations in Early Immune-Cell and Cellular Metabolism Responses

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.05.543406

N/A

0.208DataRank · unranked

3 citations

Brian D. Piening, Bo Xia, Chenchen Zhu, Jeffrey Stern, Weimin Zhang +45 more

Programmed ribosomal frameshifting during PLEKHM2 mRNA decoding generates a constitutively active proteoform that supports myocardial function

Science Advances(2025)10.1126/sciadv.ady1742

N/A

0.208DataRank · unranked

3 citations

Raffaella De Pace, Ningyu Ding, Jianchao Zhang, Irwin Jungreis, Gionmattia Carancini +10 more

Mature and migratory dendritic cells promote immune infiltration and response to anti-PD-1 checkpoint blockade in metastatic melanoma

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.20.599945

N/A

0.208DataRank · unranked

3 citations

Cassia Wang, Doris Fu, Marcus Ho, Kyriakitsa Galani, Lee Chen +14 more

A latent topic model for mining heterogenous non-randomly missing electronic health records data

arXiv (Cornell University)(2018)10.48550/arxiv.1811.00464

N/A

0.202DataRank · unranked

1 citations

Sharon L. R. Kardia, Yue Li

Genome-Wide Exploration of DNA Methylation in the Aging Brain and Its Relation to Alzheimer's Disease (P05.070)

Neurology(2012)10.1212/wnl.78.1_meetingabstracts.p05.070

N/A

0.201DataRank · unranked

2 citations

Richard S. Sandstrom, Phillip de Jager, Gyan Srivastava, Matthew L. Eaton, Lori B. Chibnik +3 more

Genome-wide regulatory model from MPRA data predicts functional regions, eQTLs, and GWAS hits

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/110171

N/A

0.198DataRank · unranked

2 citations

Ryan Tewhey, Pardis C. Sabeti, Jason Ernst, Sharon L. R. Kardia, Alvin Shi +1 more

LLMs Understand Glass-Box Models, Discover Surprises, and Suggest Repairs

arXiv (Cornell University)(2023)10.48550/arxiv.2308.01157

N/A

0.191DataRank · unranked

2 citations

Sebastian Bordt, Harsha Nori, Mark E. Nunnally, Yindalon Aphinyanaphongs, Sharon L. R. Kardia +2 more

The ENCODE Imputation Challenge: A critical assessment of methods for cross-cell type imputation of epigenomic profiles

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.30.502157

N/A

0.190DataRank · unranked

2 citations

Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang, Jen-Chien Chang +40 more

Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.16.532873

N/A

0.177DataRank · unranked

2 citations

Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T. J. van Velthoven, Na Sun +6 more

Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2012 Special Issue

Journal of Computational Biology(2013)10.1089/cmb.2013.008p

N/A

0.176DataRank · unranked

1 citations

Sharon L. R. Kardia, Gustavo Stolovitzky, Andrea Califano

Epigenetic control of metabolic identity across cell types

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.24.604914

N/A

0.175DataRank · unranked

2 citations

Déborah Gerard, Riley J. Mangan, Alec R. Chapman, Dennis Hecker, Sharon L. R. Kardia +4 more

Context-dependent regulatory variants in Alzheimer’s disease

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.11.659973

N/A

0.171DataRank · unranked

2 citations

Yaxuan Liu, Ashley R. Brown, Heather H. Sestili, Easwaran Ramamurthy, Xushen Xiong +11 more

Specific oncogene activation of the cell of origin in mucosal melanoma

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.22.590595

N/A

0.168DataRank · unranked

2 citations

Jiajia Chen, Emily Robitschek, Chloé S. Baron, Constance Wu, Aikaterini Dedeilia +17 more

Analysis of Genetically Regulated Gene Expression identifies a trauma type specific PTSD gene, SNRNP35

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/581124

N/A

0.165DataRank · unranked

2 citations

Michael S. Breen, Chris Chatzinakos, Jakob Hartmann, Torsten Klengel, Ana C. da Silva Almeida +35 more

The changing face of genomics.

Genome Biology(2004)10.1186/gb-2004-5-5-324

N/A

0.165DataRank · unranked

2 citations

Sharon L. R. Kardia

Proteogenomics in cerebrospinal fluid and plasma reveals new biological fingerprint of cerebral small vessel disease

Nature Aging(2025)10.1038/s43587-025-01006-w

N/A

0.165DataRank · unranked

2 citations

Daniel Western, Shinichi Namba, Na Sun, Shuji Kawaguchi, Yunye He +56 more

Genetic determinants and genomic consequences of non-leukemogenic somatic point mutations

Nature Communications(2025)10.1038/s41467-025-64236-x

N/A

0.165DataRank · unranked

2 citations

Sharjeel A. Chaudhry, Μαρία Ιωάννου, Maria Viskadourou, Paula Reventún, Yasminka A. Jakubek +49 more

Biophysical characterization of high-confidence, small human proteins

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.12.589296

N/A

0.165DataRank · unranked

2 citations

Irwin Jungreis, Jeffre Allen, Christina Cleveland, Shinichi Morishita, Sharon L. R. Kardia +4 more

Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

eLife(2024)10.7554/elife.87866.2

N/A

0.165DataRank · unranked

2 citations

Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T. J. van Velthoven, Na Sun +6 more

RECOMB/ISCB Systems Biology, Regulatory Genomics, and DREAM 2013 Special Issue

Journal of Computational Biology(2014)10.1089/cmb.2014.009p

N/A

0.165DataRank · unranked

2 citations

Sharon L. R. Kardia, Gustavo Stolovitzky, Andrea Califano

Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Communications Biology(2022)10.1038/s42003-022-03769-z

N/A

0.165DataRank · unranked

2 citations

Lars Feuerbach, Chen Hong, David Mas-Ponte, Randi Istrup Pedersen, PCAWG Drivers and Functional Interpretation Group +1255 more

Combinatorial Optimization for Predicting Optimal Cell-state Conversion Paths

2023 16th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI)(2023)10.1109/cisp-bmei60920.2023.10373258

N/A

0.165DataRank · unranked

2 citations

Sharon L. R. Kardia, Martin Wohlwend, Shaurya Agrawal

An Autoimmune Transcriptional Circuit Driving Foxp3 + Regulatory T cell Dysfunction

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.02.518871

N/A

0.165DataRank · unranked

2 citations

Matthew R. Lincoln, Liang He, Yongjin P. Park, Mineto Ota, Helen A. Stillwell +8 more

Comparison of human and mouse tissues with focus on genes with no 1-to-1 homology

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.22.445250

N/A

0.158DataRank · unranked

1 citations

Sharon L. R. Kardia, Jieun Jeong

Unlocking the secrets of the genome

UNC Libraries(2020)10.17615/aw2c-np04

N/A

0.154DataRank · unranked

1 citations

Laura A. L. Dillon, Grigorios Georgolopoulos, Kristin C. Gunsalus, Steven Henikoff, Gary H. Karpen +10 more

Multisensory gamma stimulation enhances adult neurogenesis and improves cognitive function in male mice with Down Syndrome

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.03.616486

N/A

0.142DataRank · unranked

1 citations

Brennan Jackson, Maeesha Tasnim Naomi, Noah Tan, Mitchell Murdock, Dong Shin Park +13 more

Exome-wide age-of-onset analysis reveals exonic variants in ERN1, TACR3 and SPPL2C associated with Alzheimer’s disease

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.28.923789

N/A

0.135DataRank · unranked

1 citations

Yury Loika, Yongjin Park, David A. Bennett, Sharon L. R. Kardia, Alexander M. Kulminski +2 more

GENCODE: Creating a Validated Manually Annotated Geneset for the Whole Human Genome

Nature Precedings(2009)10.1038/npre.2009.3155.1

Top 71%

0.128DataRank

Top 71%1 citations

Giulio Formenti, Rizi Ai, Nicholas J. Dickens, Genome Institute at Washington University, Michael Tress +45 more

Multi‐polygenic score model informs the genetic basis of heterogeneity in Alzheimer’s disease

Alzheimer's & Dementia(2023)10.1002/alz.079231

N/A

0.126DataRank · unranked

1 citations

Na Sun, William F Li, Carles B. Adsera, Kyriaki Galani, Hansruedi Mathys +4 more

Engineered 3D Immuno-Glial-Neurovascular Human miBrain Model

Research Square(2024)10.21203/rs.3.rs-4577378/v1

N/A

0.122DataRank · unranked

1 citations

Karri Silventoinen, Adele Bubnys, Emre Agbas, Dong Park, Alan Jiang +14 more

Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters

UNC Libraries(2021)10.17615/wdw5-4544

N/A

0.120DataRank · unranked

1 citations

Yulei Wang, Alireza Heravi-Moussavi, Ashley K. Koegel, Yojiro Kotake, Gavin D. Grant +17 more

Author Correction: Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery

Nature Neuroscience(2024)10.1038/s41593-024-01858-2

N/A

0.118DataRank · unranked

1 citations

Gonçalo Castelo-Branco, Fei Chen, Simone Codeluppi, M. Ryan Corces, Jean Fan +26 more

mRNA structure dynamics identifies the embryonic RNA regulome

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/274290

N/A

0.117DataRank · unranked

1 citations

Eva Maria Novoa, Charles E. Vejnar, Valeria Yartseva, Sharon L. R. Kardia, Carter M. Takacs +2 more

Huntington’s Disease Produces Multiplexed Transcriptional Vulnerabilities of Striatal D1-D2 and Striosome-Matrix Neurons

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.25.489455

N/A

0.116DataRank · unranked

1 citations

Sergio Sebastian Pineda, Jill R. Crittenden, Hyeseung Lee, Kyriakitsa Galani, Julio Mantero +4 more

Specific oncogene activation of the cell of origin in mucosal melanoma

Nature Communications(2025)10.1038/s41467-025-61937-1

N/A

0.107DataRank · unranked

1 citations

Jiajia Chen, Chloé S. Baron, Kaiwen Sun, Emily Robitschek, Alicia M. McConnell +18 more

Correlating predicted epigenetic marks with expression data to find interactions between SNPs and genes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.29.970962

N/A

0.106DataRank · unranked

1 citations

Yongjin Park, Michael Lapi, Sharon L. R. Kardia, Antoine Despinasse

Supplementary Data Files for "Power of inclusion: Enhancing polygenic prediction with admixed individuals"

Figshare(2023)10.6084/m9.figshare.22905368

Top 78%

0.104DataRank

Top 78%1 citations

Sharon L. R. Kardia, Yosuke Tanigawa

Compensatory Plasticity Defines a Vulnerable Neuronal State in Alzheimer’s Disease with Psychosis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.30.651435

N/A

0.104DataRank · unranked

1 citations

Na Sun, Kyriakitsa Galani, Gloria Suella Menchaca, Yosuke Tanigawa, Aine Ni Scannail +9 more

CONCERT predicts niche-aware perturbation responses in spatial transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.08.686890

N/A

0.104DataRank · unranked

1 citations

Zhenglun Kong, Soumya Ghosh, Sharon L. R. Kardia, Marinka Zitnik, Xiang Lin

Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorization

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/217588

N/A

0.104DataRank · unranked

1 citations

Jose Davila-Velderrain, Zhizhuo Zhang, Sharon L. R. Kardia, José Dávila-Velderrain, Dianbo Liu

Proteogenomics-enabled discovery of novel small open reading frame (sORF)-encoded polypeptides in human and mouse tissues

Nucleic Acids Research(2025)10.1093/nar/gkaf687

N/A

0.104DataRank · unranked

1 citations

Yuting Xie, Lingshuo Wang, Irwin Jungreis, Tong Ou, Sharon L. R. Kardia +3 more

Author Correction: Regulatory genomic circuitry of human disease loci by integrative epigenomics

Nature(2025)10.1038/s41586-025-09134-4

N/A

0.104DataRank · unranked

1 citations

Benjamin T. James, Yongjin P. Park, Wouter Meuleman, Sharon L. R. Kardia, Carles B. Adsera

Various localized epigenetic marks predict expression across 54 samples and reveal underlying chromatin state enrichments

bioRxiv (Cold Spring Harbor Laboratory)(2015)10.1101/030478

Top 78%

0.104DataRank

Top 78%1 citations

Angela Yen, Sharon L. R. Kardia, Lalita Devadas

Cell type-specific contributions to impaired blood-brain barrier and cerebral metabolism in presymptomatic 5XFAD mice

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.23.650260

N/A

0.104DataRank · unranked

1 citations

Na Sun, Zhiliang Wei, Aaron Kakazu, Yuxiao Ouyang, Ruoxuan Li +13 more

Energy Conservation Drives Adaptive Specialization Through Fine-tuned Organizations

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.06.692764

N/A

0.104DataRank · unranked

1 citations

Naeimeh Atabaki-Pasdar, Suvi Linna-Kuosmanen, Kevin Grove, Sharon L. R. Kardia, Leandro Z. Agudelo +2 more

Convergent Signals Encode Persistent Memory of Resilient States

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.15.694462

N/A

0.104DataRank · unranked

1 citations

Hannah Prendeville, Na Sun, Cathal Harmon, Kyriakitsa Galani, Kevin Grove +6 more

Single-Cell Dissection of Obesity-Exercise Axis in Adipose-Muscle Tissues Reveals Central Role of Mesenchymal Stem Cells

SSRN Electronic Journal(2022)10.2139/ssrn.4030990

N/A

0.104DataRank · unranked

1 citations

Maria Vamvini, Pasquale Nigro, Marcus Ho, Kiki Galani, Marcus Alvarez +12 more

Applications of Deep Learning to physics workflows

arXiv (Cornell University)(2023)10.48550/arxiv.2306.08106

N/A

0.104DataRank · unranked

1 citations

Jay Alameda, Jeroen Audenaert, Will Benoit, Damon Beveridge, Meghna Bhattacharya +63 more

NOTMAD: Estimating Bayesian Networks with Sample-Specific Structures and Parameters

arXiv (Cornell University)(2021)10.48550/arxiv.2111.01104

N/A

0.104DataRank · unranked

1 citations

Caleb N. Ellington, Bryon Aragam, Eric P. Xing, Sharon L. R. Kardia, Benjamin J. Lengerich

Phylogenetic analysis of longitudinal melanoma samples to reveal convergent evolution and markers of immunotherapy resistance.

Journal of Clinical Oncology(2018)10.1200/jco.2018.36.15_suppl.9581

N/A

0.104DataRank · unranked

1 citations

Gao Zhang, Alvin Shi, Benjamin Izar, Alexander Heyde, Gyulnara G. Kasumova +14 more

ENCSR111HJJ

ENCODE Datasets(2021)10.17989/encsr111hjj

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR615FLL

ENCODE Datasets(2021)10.17989/encsr615fll

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Evolutionary dynamics of abundant stop codon readthrough in Anopheles and Drosophila

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/051557

N/A

0DataRank · unranked

0 citations

Clara S. Chan, Robert M. Waterhouse, Gabriel Fields, Alireza Heravi-Moussavi, Sharon L. R. Kardia +1 more

ENCSR258NXK

ENCODE Datasets(2021)10.17989/encsr258nxk

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR609PKL

ENCODE Datasets(2021)10.17989/encsr609pkl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR369BXV

ENCODE Datasets(2021)10.17989/encsr369bxv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR789WYN

ENCODE Datasets(2021)10.17989/encsr789wyn

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR531QFQ

ENCODE Datasets(2021)10.17989/encsr531qfq

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR221IIR

ENCODE Datasets(2021)10.17989/encsr221iir

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR594RSL

ENCODE Datasets(2021)10.17989/encsr594rsl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR606LJX

ENCODE Datasets(2021)10.17989/encsr606ljx

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR984YXR

ENCODE Datasets(2021)10.17989/encsr984yxr

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR342XHP

ENCODE Datasets(2021)10.17989/encsr342xhp

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR424KBP

ENCODE Datasets(2021)10.17989/encsr424kbp

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR185DGH

ENCODE Datasets(2021)10.17989/encsr185dgh

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR898YXV

ENCODE Datasets(2021)10.17989/encsr898yxv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR565WLT

ENCODE Datasets(2021)10.17989/encsr565wlt

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR675RRV

ENCODE Datasets(2021)10.17989/encsr675rrv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR865TMP

ENCODE Datasets(2021)10.17989/encsr865tmp

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR074TTL

ENCODE Datasets(2021)10.17989/encsr074ttl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR382QRC

ENCODE Datasets(2021)10.17989/encsr382qrc

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Genus-wide characterization of bumblebee genomes reveals variation associated with key ecological and behavioral traits of pollinators

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.29.122879

N/A

0DataRank · unranked

0 citations

Jiaxing Huang, Yun Wang, Xiaomeng Zhao, Long Su, Gregg W.C. Thomas +42 more

ENCSR382QLA

ENCODE Datasets(2021)10.17989/encsr382qla

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR214MSL

ENCODE Datasets(2021)10.17989/encsr214msl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR114GBL

ENCODE Datasets(2021)10.17989/encsr114gbl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Additional file 1 of Interleukin-6 deficiency exacerbates Huntington’s disease model phenotypes

Figshare(2020)10.6084/m9.figshare.12365195

N/A

0DataRank · unranked

0 citations

Sergio Sebastian Pineda, Hyeseung Lee, Ruth Kulicke, Sharon L. R. Kardia, Myriam Heiman +1 more

ENCSR358CKP

ENCODE Datasets(2021)10.17989/encsr358ckp

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR841QWL

ENCODE Datasets(2021)10.17989/encsr841qwl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR294VGV

ENCODE Datasets(2021)10.17989/encsr294vgv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR772OPT

ENCODE Datasets(2021)10.17989/encsr772opt

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR038MRI

ENCODE Datasets(2021)10.17989/encsr038mri

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR141LVX

ENCODE Datasets(2021)10.17989/encsr141lvx

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR878PJL

ENCODE Datasets(2021)10.17989/encsr878pjl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR026VIT

ENCODE Datasets(2021)10.17989/encsr026vit

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

sc4D: spatio-temporal single-cell transcriptomics analysis through embedded optimal transport identifies joint glial response to Alzheimer’s disease pathology

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.19.689166

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia, Yosuke Tanigawa, Ishir Rao

ENCSR793CSL

ENCODE Datasets(2021)10.17989/encsr793csl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR161HNC

ENCODE Datasets(2021)10.17989/encsr161hnc

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR939MLN

ENCODE Datasets(2021)10.17989/encsr939mln

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR609HWL

ENCODE Datasets(2021)10.17989/encsr609hwl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR233PBQ

ENCODE Datasets(2021)10.17989/encsr233pbq

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR876QWJ

ENCODE Datasets(2021)10.17989/encsr876qwj

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR933ELR

ENCODE Datasets(2021)10.17989/encsr933elr

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR684AJL

ENCODE Datasets(2021)10.17989/encsr684ajl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR039GIH

ENCODE Datasets(2021)10.17989/encsr039gih

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR555ICL

ENCODE Datasets(2021)10.17989/encsr555icl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR886WQF

ENCODE Datasets(2021)10.17989/encsr886wqf

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR277EAE

ENCODE Datasets(2021)10.17989/encsr277eae

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR231IHL

ENCODE Datasets(2021)10.17989/encsr231ihl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR969XKL

ENCODE Datasets(2021)10.17989/encsr969xkl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR135BAW

ENCODE Datasets(2021)10.17989/encsr135baw

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR393POI

ENCODE Datasets(2021)10.17989/encsr393poi

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR287WYH

ENCODE Datasets(2021)10.17989/encsr287wyh

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR065GFP

ENCODE Datasets(2021)10.17989/encsr065gfp

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR668QKH

ENCODE Datasets(2021)10.17989/encsr668qkh

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR777NUC

ENCODE Datasets(2021)10.17989/encsr777nuc

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR938BWE

ENCODE Datasets(2021)10.17989/encsr938bwe

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR465YDL

ENCODE Datasets(2021)10.17989/encsr465ydl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR571DGV

ENCODE Datasets(2021)10.17989/encsr571dgv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR324KKI

ENCODE Datasets(2021)10.17989/encsr324kki

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR867QLM

ENCODE Datasets(2021)10.17989/encsr867qlm

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR472LZL

ENCODE Datasets(2021)10.17989/encsr472lzl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR861GGV

ENCODE Datasets(2021)10.17989/encsr861ggv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR310SXQ

ENCODE Datasets(2021)10.17989/encsr310sxq

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR417RRH

ENCODE Datasets(2021)10.17989/encsr417rrh

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR405RRV

ENCODE Datasets(2021)10.17989/encsr405rrv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR303BNH

ENCODE Datasets(2021)10.17989/encsr303bnh

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR374TJS

ENCODE Datasets(2021)10.17989/encsr374tjs

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR296DQL

ENCODE Datasets(2021)10.17989/encsr296dql

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Genetic Architecture of Gene Expression in European and African Americans: An eQTL Mapping Study in GENOA

The American Journal of Human Genetics(2020)10.1016/j.ajhg.2020.03.002

N/A

0DataRank · unranked

101 citations

Jennifer A. Smith, Wei Zhao, Minjung Kho, Stephen T. Turner, Thomas H. Mosley +3 more

The public’s comfort with sharing health data with third-party commercial companies

Humanities and Social Sciences Communications(2020)10.1057/s41599-020-00641-5

N/A

0DataRank · unranked

59 citations

Jodyn Platt, Sharon L. R. Kardia, M. Grace Trinidad

Do people have an ethical obligation to share their health information? Comparing narratives of altruism and health information sharing in a nationally representative sample

PLoS ONE(2020)10.1371/journal.pone.0244767

N/A

0DataRank · unranked

22 citations

Raymond De Vries, Paige Nong, Sharon L. R. Kardia, Jodyn Platt, Minakshi Raj

A Noncoding Variant Near PPP1R3B Promotes Liver Glycogen Storage and MetS, but Protects Against Myocardial Infarction

The Journal of Clinical Endocrinology & Metabolism(2020)10.1210/clinem/dgaa855

N/A

0DataRank · unranked

19 citations

Yue Chen, Mary F. Feitosa, Lawrence F. Bielak, Jeffrey R. O’Connell, Solomon K. Musani +41 more

Smoking-by-genotype interaction in type 2 diabetes risk and fasting glucose

PLoS ONE(2020)10.1371/journal.pone.0230815

N/A

0DataRank · unranked

45 citations

Denis Rybin, Lawrence F. Bielak, Mary F. Feitosa, Nora Franceschini, Yize Li +53 more

Combined admixture mapping and association analysis identifies a novel blood pressure genetic locus on 5p13: contributions from the CARe consortium

UNC Libraries(2020)10.17615/a03d-0d18

N/A

0DataRank · unranked

1 citations

Daniel L. Dries, Kiang Liu, Xiaofeng Zhu, Charleston W. K. Chiang, Adebowale Adeyemo +27 more

Rare coding variants in 35 genes associate with circulating lipid levels – a multi-ancestry analysis of 170,000 exomes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.22.423783

N/A

0DataRank · unranked

11 citations

Peter Dornbos, Mark Chaffin, Dajiang J. Liu, Minxian X. Wang, Margaret Sunitha Selvaraj +95 more

A system for phenotype harmonization in the NHLBI Trans-Omics for Precision Medicine (TOPMed) Program

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.18.146423

N/A

0DataRank · unranked

5 citations

Leslie S. Emery, Jai Broome, Erin Buth, Alyna Khan, Cecelia Laurie +67 more

Genetic Association for Renal Traits among Participants of African Ancestry Reveals New Loci for Renal Function

UNC Libraries(2020)10.17615/1t9q-g098

N/A

0DataRank · unranked

0 citations

Sharon B. Wyatt, Raymond R. Townsend, Josef Coresh, Stephen T. Turner, Thomas H. Mosley +26 more

Genome-wide Studies of Verbal Declarative Memory in Nondemented Older People: The Cohorts for Heart and Aging Research in Genomic Epidemiology Consortium

UNC Libraries(2020)10.17615/xs3t-3334

N/A

0DataRank · unranked

0 citations

Annette L. Fitzpatrick, Luigi Ferrucci, Paul M. Ridker, Bertram Müller-Myhsok, Arezoo Assareh +95 more

Multi-Ethnic Genome-Wide Association Study of Cerebral White Matter Hyperintensities on MRI

MURAL - Maynooth University Research Archive Library (National University of Ireland, Maynooth)(2020)10.17615/8trn-p892

N/A

0DataRank · unranked

0 citations

W. T. Longstreth, Reinhold Schmidt, Paul Freudenberger, Pamela J. Schreiner, Stella Trompet +95 more

Genetic diversity is a predictor of mortality in humans

UNC Libraries(2020)10.17615/kwh0-eh07

N/A

0DataRank · unranked

0 citations

John M. Starr, David A. Bennett, Kathryn L. Lunetta, Hans J. Grabe, Lei Yu +47 more

Rare variants in fox-1 homolog A (RBFOX1) are associated with lower blood pressure

UNC Libraries(2020)10.17615/gak2-c922

N/A

0DataRank · unranked

0 citations

Ayush Giri, Brian E. Cade, Heming Wang, Todd L. Edwards, Thu H. Le +13 more

Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation

UNC Libraries(2020)10.17615/frhz-yk87

N/A

0DataRank · unranked

0 citations

Juan M. Peralta, Olivia Weeks, Gudnason, Vilmunder, Kurt Lohman, Andrew D. Johnson +63 more

Association Between Chromosome 9p21 Variants and the Ankle-Brachial Index Identified by a Meta-Analysis of 21 Genome-Wide Association Studies

UNC Libraries(2020)10.17615/tb6e-th27

N/A

0DataRank · unranked

0 citations

Christina L. Wassel, Tanja Zeller, Lina Zgaga, Eric Boerwinkle, Ben A. Oostra +95 more

An Analysis of Two Genome-wide Association Meta-analyses Identifies a New Locus for Broad Depression Phenotype

UNC Libraries(2020)10.17615/jcdv-pt45

N/A

0DataRank · unranked

0 citations

Wei Zhao, Cathryn M. Lewis, Thomas G. Schulze, Philip L. De Jager, Markus M. Nöthen +95 more

Novel DNA methylation signatures of tobacco smoking with trans-ethnic effects

Clinical Epigenetics(2021)10.1186/s13148-021-01018-4

N/A

0DataRank · unranked

91 citations

Juan Castillo‐Fernandez, Arce Domingo‐Relloso, Wei Zhao, Julia S. El-Sayed Moustafa, Pei-Chien Tsai +19 more

Population sequencing data reveal a compendium of mutational processes in the human germ line

Science(2021)10.1126/science.aba7408

N/A

0DataRank · unranked

74 citations

Ruslan Soldatov, Evan M. Koch, Ryan J. McGinty, Jakob M. Goldmann, Ryan D. Hernandez +38 more

Rare coding variants in 35 genes associate with circulating lipid levels—A multi-ancestry analysis of 170,000 exomes

The American Journal of Human Genetics(2021)10.1016/j.ajhg.2021.11.021

N/A

0DataRank · unranked

70 citations

Peter Dornbos, Mark Chaffin, Dajiang J. Liu, Minxian Wang, Margaret Sunitha Selvaraj +95 more

A System for Phenotype Harmonization in the National Heart, Lung, and Blood Institute Trans-Omics for Precision Medicine (TOPMed) Program

American Journal of Epidemiology(2021)10.1093/aje/kwab115

N/A

0DataRank · unranked

66 citations

Leslie S. Emery, Jai Broome, Erin Buth, Alyna Khan, Cecelia Laurie +67 more

Gene-mapping study of extremes of cerebral small vessel disease reveals TRIM47 as a strong candidate

Brain(2021)10.1093/brain/awab432

N/A

0DataRank · unranked

34 citations

Cécile Duplàa, Dina Vojinović, Hideaki Suzuki, Nuno R. Zilhäo, Shuo Li +61 more

Allele-specific variation atAPOEincreases nonalcoholic fatty liver disease and obesity but decreases risk of Alzheimer’s disease and myocardial infarction

Human Molecular Genetics(2021)10.1093/hmg/ddab096

N/A

0DataRank · unranked

41 citations

Bratati Kahali, Annapurna Kuppa, Yanhua Chen, Xiaomeng Du, Mary F. Feitosa +31 more

Bayesian Sparse Mediation Analysis with Targeted Penalization of Natural Indirect Effects

Journal of the Royal Statistical Society Series C (Applied Statistics)(2021)10.1111/rssc.12518

N/A

0DataRank · unranked

21 citations

Xiang Zhou, Lana X. Garmire, Max T. Aung, Min Zhang, Wei Zhao +7 more

Bayesian hierarchical models for high‐dimensional mediation analysis with coordinated selection of correlated mediators

Statistics in Medicine(2021)10.1002/sim.9168

N/A

0DataRank · unranked

16 citations

Xiang Zhou, Lana X. Garmire, Max T. Aung, Min Zhang, Wei Zhao +7 more

Association of low-frequency and rare coding variants with information processing speed

Translational Psychiatry(2021)10.1038/s41398-021-01736-6

N/A

0DataRank · unranked

2 citations

Gail Davies, Albert V. Smith, Yasaman Saba, Joshua C. Bis, Xueqiu Jian +50 more

Clonal hematopoiesis is driven by aberrant activation of TCL1A

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.10.471810

N/A

0DataRank · unranked

10 citations

Jayakrishnan Gopakumar, Bala Bharathi Burugula, Md Mesbah Uddin, Nikolaus Jahn, Julia A. Belk +95 more

Whole genome sequence analysis of blood lipid levels in >66,000 individuals

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.11.463514

N/A

0DataRank · unranked

3 citations

Xihao Li, Zilin Li, Akhil Pampana, David Y Zhang, Joseph Park +80 more

Discrimination, trust, and withholding information from providers: Implications for missing data and inequity

SSM - Population Health(2022)10.1016/j.ssmph.2022.101092

N/A

0DataRank · unranked

52 citations

Alicia Williamson, Denise Anthony, Jodyn Platt, Sharon L. R. Kardia, Paige Nong

Epigenetic and integrative cross-omics analyses of cerebral white matter hyperintensities on MRI

Brain(2022)10.1093/brain/awac290

N/A

0DataRank · unranked

45 citations

Maria J. Knol, Ruiqi Wang, Aniket Mishra, Dan Liu, Michelle Luciano +47 more

Contribution of Common Genetic Variants to Risk of Early-Onset Ischemic Stroke

Neurology(2022)10.1212/wnl.0000000000201006

N/A

0DataRank · unranked

37 citations

Huichun Xu, Brady Gaynor, John W. Cole, Kristiina Rannikmäe, Tara M. Stanne +95 more

Rare genetic variants explain missing heritability in smoking

Nature Human Behaviour(2022)10.1038/s41562-022-01408-5

N/A

0DataRank · unranked

31 citations

Luke M. Evans, Allison Fialkowski, Donna K. Arnett, Allison E. Ashley‐Koch, Kathleen C. Barnes +85 more

Opioid Medication Use and Blood Dna Methylation: Epigenome-Wide Association Meta-Analysis

Epigenomics(2022)10.2217/epi-2022-0353

N/A

0DataRank · unranked

11 citations

Roby Joehanes, Daniel L. McCartney, Minjung Kho, Anke Hüls, Annah B. Wyss +17 more

Exome Array Analysis of 9721 Ischemic Stroke Cases from the SiGN Consortium

Genes(2022)10.3390/genes14010061

N/A

0DataRank · unranked

4 citations

Kevin A. Nguyen, Brady Gaynor, Hua Ling, Wei Zhao, Patrick F. McArdle +21 more

Mosaic chromosomal alterations in blood across ancestries via whole-genome sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.07.515222

N/A

0DataRank · unranked

3 citations

Ying Zhou, Adrienne M. Stilp, Jason Bacon, Justin Wong, Zuhal Özcan +41 more

African ancestry genome-wide association study of blood pressure and hypertension identifies 25 novel loci through predicted gene expression

Research Square(2022)10.21203/rs.3.rs-1392991/v1

N/A

0DataRank · unranked

1 citations

Jingjing Liang, Ayush Giri, Jacob M. Keaton, Xiao Sun, Eric S. Torstenson +35 more

Genome-wide association meta-analysis identifies 17 loci associated with nonalcoholic fatty liver disease

Nature Genetics(2023)10.1038/s41588-023-01497-6

N/A

0DataRank · unranked

204 citations

Xiaomeng Du, Annapurna Kuppa, Mary F. Feitosa, Lawrence F. Bielak, Jeffrey R. O’Connell +32 more

Multi-ancestry genome-wide study identifies effector genes and druggable pathways for coronary artery calcification

Nature Genetics(2023)10.1038/s41588-023-01518-4

N/A

0DataRank · unranked

150 citations

Maxime M. Bos, Hanna J. Barnes, Christian L. Lino Cardenas, Doris Wong, Haojie Lu +84 more

Aberrant activation of TCL1A promotes stem cell expansion in clonal haematopoiesis

Nature(2023)10.1038/s41586-023-05806-1

N/A

0DataRank · unranked

107 citations

Jayakrishnan Gopakumar, Bala Bharathi Burugula, Md Mesbah Uddin, Nikolaus Jahn, Julia A. Belk +95 more

Genome-wide analysis identifies genetic effects on reproductive success and ongoing natural selection at the FADS locus

Nature Human Behaviour(2023)10.1038/s41562-023-01528-6

N/A

0DataRank · unranked

58 citations

Felix R. Day, Nicola Barban, Felix C. Tropf, David M. Brazel, Diana van Heemst +92 more

Multi-ancestry transcriptome-wide association analyses yield insights into tobacco use biology and drug repurposing

Nature Genetics(2023)10.1038/s41588-022-01282-x

N/A

0DataRank · unranked

56 citations

Xingyan Wang, Seon-Kyeong Jang, Bryan C. Quach, J. Dylan Weissenkampen, Chachrit Khunsriraksakul +85 more

Mosaic chromosomal alterations in blood across ancestries using whole-genome sequencing

Nature Genetics(2023)10.1038/s41588-023-01553-1

N/A

0DataRank · unranked

31 citations

Ying Zhou, Adrienne M. Stilp, Jason Bacon, Justin Wong, Zuhal Özcan +46 more

Applying anti-racist approaches to informatics: a new lens on traditional frames

Journal of the American Medical Informatics Association(2023)10.1093/jamia/ocad123

N/A

0DataRank · unranked

19 citations

Paige Nong, Beza Merid, Minakshi Raj, Elizabeth Cope, Sharon L. R. Kardia +2 more

Rare variants in long non-coding RNAs are associated with blood lipid levels in the TOPMed whole-genome sequencing study

The American Journal of Human Genetics(2023)10.1016/j.ajhg.2023.09.003

N/A

0DataRank · unranked

15 citations

Margaret Sunitha Selvaraj, Xihao Li, Zilin Li, Jacob A. Holdcraft, Donna K. Arnett +69 more

Epigenome-Wide Meta-Analysis Reveals Differential DNA Methylation Associated With Estimated Glomerular Filtration Rate Among African American Men With HIV

Kidney International Reports(2023)10.1016/j.ekir.2023.02.1085

N/A

0DataRank · unranked

9 citations

Qin Hui, Zeyuan Wang, F. Perry Wilson, Kaku So‐Armah, Matthew S. Freiberg +10 more

US Residents’ Preferences for Sharing of Electronic Health Record and Genetic Information: A Discrete Choice Experiment

Value in Health(2023)10.1016/j.jval.2023.01.015

N/A

0DataRank · unranked

9 citations

Felicia Zhang, Kerry A. Ryan, Eric P. Xing, Paige Nong, Sharon L. R. Kardia +2 more

WHOLE GENOME SEQUENCING ANALYSIS OF BODY MASS INDEX IDENTIFIES NOVEL AFRICAN ANCESTRY-SPECIFIC RISK ALLELE

medRxiv(2023)10.1101/2023.08.21.23293271

N/A

0DataRank · unranked

2 citations

Jennifer A. Brody, Mariaelisa Graff, Heather M. Highland, Nathalie Chami, Hanfei Xu +95 more

Validation of human telomere length trans-ancestry meta-analysis association signals identifies POP5 and KBTBD6 as novel human telomere length regulation genes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.12.548702

N/A

0DataRank · unranked

1 citations

Surya B. Chhetri, Carla J. Connelly, Margaret A. Taub, Matthew P. Conomos, Joshua S. Weinstock +93 more

Machine learning models for blood pressure phenotypes combining multiple polygenic risk scores

medRxiv(2023)10.1101/2023.12.13.23299909

N/A

0DataRank · unranked

0 citations

Benjamin Shea, Michael Elgart, Nuzulul Kurniansyah, Genevieve Lyons, Alanna C. Morrison +32 more

Public Attitudes Toward Notification of Use of Artificial Intelligence in Health Care

JAMA Network Open(2024)10.1001/jamanetworkopen.2024.50102

N/A

0DataRank · unranked

32 citations

Paige Nong, Glòria Carmona, Sharon L. R. Kardia, Jodyn Platt

Public comfort with the use of ChatGPT and expectations for healthcare

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae164

N/A

0DataRank · unranked

16 citations

Paige Nong, Renée Smiddy, Reema Hamasha, Gloria Carmona Clavijo, Joshua E. Richardson +2 more

Validation of human telomere length multi-ancestry meta-analysis association signals identifies POP5 and KBTBD6 as human telomere length regulation genes

Nature Communications(2024)10.1038/s41467-024-48394-y

N/A

0DataRank · unranked

8 citations

Surya B. Chhetri, Carla J. Connelly, Margaret A. Taub, Matthew P. Conomos, Joshua S. Weinstock +95 more

Multi-omics and pathway analyses of genome-wide associations implicate regulation and immunity in verbal declarative memory performance

Alzheimer s Research & Therapy(2024)10.1186/s13195-023-01376-6

N/A

0DataRank · unranked

3 citations

Jeannette Simino, Lianna Li, Fan Jiang, Joshua C. Bis, Gail Davies +62 more

Association analysis between an epigenetic alcohol risk score and blood pressure

Clinical Epigenetics(2024)10.1186/s13148-024-01753-4

N/A

0DataRank · unranked

3 citations

Amena Keshawarz, Mengyao Wang, Mi Kyeong Lee, Scott M. Ratliff, Lisha Lin +33 more

Association analysis between an epigenetic alcohol risk score and blood pressure

medRxiv(2024)10.1101/2024.02.29.24303545

N/A

0DataRank · unranked

0 citations

Amena Keshawarz, Mengyao Wang, Mi Kyeong Lee, Scott M. Ratliff, Lisha Lin +33 more

Association analysis between an epigenetic alcohol risk score and blood pressure

Research Square(2024)10.21203/rs.3.rs-4243866/v1

N/A

0DataRank · unranked

0 citations

Amena Keshawarz, Mengyao Wang, Mi Kyeong Lee, Scott M. Ratliff, Lisha Lin +33 more

Smoking-by-genotype interaction in type 2 diabetes risk and fasting glucose

UNC Libraries(2024)10.17615/sj56-cj53

N/A

0DataRank · unranked

0 citations

Salman M. Tajuddin, Linda Kao, B.H. Smith, A. Correa, Sheelakumari Raghavan +52 more

Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration

UNC Libraries(2024)10.17615/f2gw-he44

N/A

0DataRank · unranked

0 citations

Lisa Warsinger Martin, Chen-Huan Yu, Pamela J. Schreiner, Tuomo Rankinen, Sina A. Gharib +95 more

A multi-ethnic epigenome-wide association study of leukocyte DNA methylation and blood lipids

UNC Libraries(2024)10.17615/6p9v-ms63

N/A

0DataRank · unranked

0 citations

Themistocles L. Assimes, Alan R. Shuldiner, Min-A Jhun, W. Chen, D. Absher +59 more

Validation of human telomere length multi-ancestry meta-analysis association signals identifies POP5 and KBTBD6 as human telomere length regulation genes

UNC Libraries(2024)10.17615/vs68-ca81

N/A

0DataRank · unranked

0 citations

Ryan L. Minster, Fernando D. Martínez, Dawood Darbar, Juan M. Peralta, Barbara A. Konkle +93 more

Meta-analysis of genome-wide associations and polygenic risk prediction for atrial fibrillation in more than 180,000 cases

Nature Genetics(2025)10.1038/s41588-024-02072-3

N/A

0DataRank · unranked

49 citations

Ida Surakka, Morten S. Olesen, Garðar Sveinbjörnsson, Nicholas Marston, Seung Hoan Choi +95 more

50,000 years of evolutionary history of India: Impact on health and disease variation

Cell(2025)10.1016/j.cell.2025.04.027

N/A

0DataRank · unranked

32 citations

Laurits Rohden Skov, Nick Patterson, Joyita Banerjee, Pranali Khobragade, Sankha Shubhra Chakrabarti +27 more

Neighborhood environment associations with cognitive function and structural brain measures in older African Americans

BMC Medicine(2025)10.1186/s12916-024-03845-7

N/A

0DataRank · unranked

3 citations

Le Mai Tu, Kari Moore, Jiacong Du, Lauren Opsasnick, Scott M. Ratliff +9 more

Whole genome sequence analysis of low-density lipoprotein cholesterol across 246 K individuals

Genome biology(2025)10.1186/s13059-025-03698-0

N/A

0DataRank · unranked

2 citations

Xihao Li, Zilin Li, Eric Van Buren, Sara Haidermota, Darina Postupaka +95 more

Methylome-wide association analyses of lipids and modifying effects of behavioral factors in diverse race and ethnicity participants

Clinical Epigenetics(2025)10.1186/s13148-025-01859-3

N/A

0DataRank · unranked

1 citations

Jeff Haessler, Jessica I. Lundin, Burcu F. Darst, Eric A. Whitsel, Megan L. Grove +32 more

Revisiting the Evolution of Lactase Persistence: Insights from South Asian Genomes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.05.686799

N/A

0DataRank · unranked

2 citations

Meaghan Marohn, Nathan Cramer, Sharmistha Dey, Sharon L. R. Kardia, Kumarasamy Thangaraj +5 more

Aberrant activation of TCL1A promotes stem cell expansion in clonal haematopoiesis

UNC Libraries(2025)10.17615/cdn0-cm52

N/A

0DataRank · unranked

0 citations

Russell P. Tracy, Jill M. Johnsen, Hind Bouzid, Nicholas L. Smith, Katherine P. Prothro +95 more

Mosaic chromosomal alterations in blood across ancestries using whole-genome sequencing

UNC Libraries(2025)10.17615/mztm-gw84

N/A

0DataRank · unranked

0 citations

Margaret F. Doyle, Jason Bacon, Xiaolong Ma, Nathan Pankratz, Ramachandran S. Vasan +46 more

cellSTAAR: incorporating single-cell-sequencing-based functional data to boost power in rare variant association testing of noncoding regions

Nature Methods(2025)10.1038/s41592-025-02919-5

N/A

0DataRank · unranked

0 citations

Yi Zhang, Xihao Li, Margaret Sunitha Selvaraj, Zilin Li, Hufeng Zhou +544 more

Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower

Nature Communications(2022)10.1038/s41467-022-32343-8

N/A

0DataRank · unranked

0 citations

PCAWG Drivers and Functional Interpretation Working Group, Federico Abascal, Samirkumar B. Amin, Pratiti Bandopadhayay, Rameen Beroukhim +1242 more

200. Dissecting the Transcriptomic and Phenotypic Complexity of PTSD With Transcriptomic Imputation and Bayesian Machine Learning

Biological Psychiatry(2019)10.1016/j.biopsych.2019.03.214

N/A

0DataRank · unranked

0 citations

Vasiliki Michopoulos, Adriana Lori, Abigail Lott, Bekh Bradley, Tanja Jovanovic +5 more

Analysis of Genetically Regulated Gene Expression Identifies a Prefrontal PTSD Gene, SNRNP35, Specific to Military Cohorts

SSRN Electronic Journal(2019)10.2139/ssrn.3473465

N/A

0DataRank · unranked

0 citations

Chris Chatzinakos, Michael S. Breen, Jakob Hartmann, Torsten Klengel, Ana C. da Silva Almeida +42 more

Analysis of Genetically Regulated Gene Expression Identifies a Trauma Type Specific PTSD Gene, SNRNP35

SSRN Electronic Journal(2019)10.2139/ssrn.3353219

N/A

0DataRank · unranked

0 citations

Michael S. Breen, Chris Chatzinakos, Jakob Hartmann, Torsten Klengel, Ana C. da Silva Almeida +42 more

ENCSR038YXR

ENCODE Datasets(2021)10.17989/encsr038yxr

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR222LHV

ENCODE Datasets(2021)10.17989/encsr222lhv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR226CNH

ENCODE Datasets(2021)10.17989/encsr226cnh

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR870PUV

ENCODE Datasets(2021)10.17989/encsr870puv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR272FII

ENCODE Datasets(2021)10.17989/encsr272fii

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR213HRS

ENCODE Datasets(2021)10.17989/encsr213hrs

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR380XAM

ENCODE Datasets(2021)10.17989/encsr380xam

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ProteinRPN: Towards Accurate Protein Function Prediction with Graph-Based Region Proposals

arXiv (Cornell University)(2024)10.48550/arxiv.2409.00610

N/A

0DataRank · unranked

0 citations

Lei Huang, Sharon L. R. Kardia, Shania Mitra

ENCSR847DDV

ENCODE Datasets(2021)10.17989/encsr847ddv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR157LUA

ENCODE Datasets(2021)10.17989/encsr157lua

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR531TPL

ENCODE Datasets(2021)10.17989/encsr531tpl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR683GGV

ENCODE Datasets(2021)10.17989/encsr683ggv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR496ZUJ

ENCODE Datasets(2021)10.17989/encsr496zuj

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR929QXV

ENCODE Datasets(2021)10.17989/encsr929qxv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR239NPK

ENCODE Datasets(2021)10.17989/encsr239npk

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR121AHM

ENCODE Datasets(2021)10.17989/encsr121ahm

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR585HYI

ENCODE Datasets(2021)10.17989/encsr585hyi

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR436BTF

ENCODE Datasets(2021)10.17989/encsr436btf

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR273XRZ

ENCODE Datasets(2021)10.17989/encsr273xrz

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR307JSJ

ENCODE Datasets(2021)10.17989/encsr307jsj

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR515AJV

ENCODE Datasets(2021)10.17989/encsr515ajv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR379UEL

ENCODE Datasets(2021)10.17989/encsr379uel

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR936XLV

ENCODE Datasets(2021)10.17989/encsr936xlv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR814GPS

ENCODE Datasets(2021)10.17989/encsr814gps

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR069CSL

ENCODE Datasets(2021)10.17989/encsr069csl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR128LXV

ENCODE Datasets(2021)10.17989/encsr128lxv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR802PSV

ENCODE Datasets(2021)10.17989/encsr802psv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR215ETL

ENCODE Datasets(2021)10.17989/encsr215etl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR863NLV

ENCODE Datasets(2021)10.17989/encsr863nlv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR901BSG

ENCODE Datasets(2021)10.17989/encsr901bsg

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR362EJX

ENCODE Datasets(2021)10.17989/encsr362ejx

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR872GMW

ENCODE Datasets(2021)10.17989/encsr872gmw

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR748MWB

ENCODE Datasets(2021)10.17989/encsr748mwb

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR182UGJ

ENCODE Datasets(2021)10.17989/encsr182ugj

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR801AXB

ENCODE Datasets(2021)10.17989/encsr801axb

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR964NCN

ENCODE Datasets(2021)10.17989/encsr964ncn

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Hypometric genetics: Improved power in genetic discovery by incorporating quality control flags

The American Journal of Human Genetics(2024)10.1016/j.ajhg.2024.09.008

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia, Yosuke Tanigawa

Targeting IL-1 controls refractory Pityriasis rubra pilaris

Research Square(2023)10.21203/rs.3.rs-3433295/v1

N/A

0DataRank · unranked

0 citations

Yannik Severin, Xianying Xing, Aaron Mangold, Curdin Conrad, Pål Johannsen +21 more

ENCSR674EXR

ENCODE Datasets(2021)10.17989/encsr674exr

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR935NJT

ENCODE Datasets(2021)10.17989/encsr935njt

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR122BFD

ENCODE Datasets(2021)10.17989/encsr122bfd

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR291GQV

ENCODE Datasets(2021)10.17989/encsr291gqv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR869PEK

ENCODE Datasets(2021)10.17989/encsr869pek

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR670GFA

ENCODE Datasets(2021)10.17989/encsr670gfa

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR251GLL

ENCODE Datasets(2021)10.17989/encsr251gll

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR451KHW

ENCODE Datasets(2021)10.17989/encsr451khw

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR209LXL

ENCODE Datasets(2021)10.17989/encsr209lxl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR684HPD

ENCODE Datasets(2021)10.17989/encsr684hpd

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Author Response: Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

(2024)10.7554/elife.87866.3.sa4

N/A

0DataRank · unranked

0 citations

Lei Jin, Shenqin Yao, Makoto Matsuyama, Na Sun, Sharon L. R. Kardia +6 more

ENCSR674SID

ENCODE Datasets(2021)10.17989/encsr674sid

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR872AFV

ENCODE Datasets(2021)10.17989/encsr872afv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR217GFA

ENCODE Datasets(2021)10.17989/encsr217gfa

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR553AQL

ENCODE Datasets(2021)10.17989/encsr553aql

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR287CMV

ENCODE Datasets(2021)10.17989/encsr287cmv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Regulatory and systems genomics of complex traits and intermediate molecular phenotypes

Open Collections(2014)10.14288/1.0043306

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR417ACZ

ENCODE Datasets(2021)10.17989/encsr417acz

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR012GDL

ENCODE Datasets(2021)10.17989/encsr012gdl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR910IML

ENCODE Datasets(2021)10.17989/encsr910iml

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR915BNR

ENCODE Datasets(2021)10.17989/encsr915bnr

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR878LWT

ENCODE Datasets(2021)10.17989/encsr878lwt

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR675OIM

ENCODE Datasets(2021)10.17989/encsr675oim

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR837TRV

ENCODE Datasets(2021)10.17989/encsr837trv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR189COV

ENCODE Datasets(2021)10.17989/encsr189cov

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR393ZSL

ENCODE Datasets(2021)10.17989/encsr393zsl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR895RPI

ENCODE Datasets(2021)10.17989/encsr895rpi

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR166PZL

ENCODE Datasets(2021)10.17989/encsr166pzl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR042WRV

ENCODE Datasets(2021)10.17989/encsr042wrv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR514CMV

ENCODE Datasets(2021)10.17989/encsr514cmv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR530ZDL

ENCODE Datasets(2021)10.17989/encsr530zdl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR805ZKA

ENCODE Datasets(2021)10.17989/encsr805zka

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Metabolic resilience is encoded in genome plasticity

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.25.449953

N/A

0DataRank · unranked

0 citations

Rémy Tuyéras, Claudia Llinares, Alvaro Morcuende, Yongjin Park, Na Sun +14 more

Cell-type specific vulnerability in a subcortical limbic circuit node in Alzheimer's disease

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.7783650

N/A

0DataRank · unranked

0 citations

P Zhuyu, MH Murdock, Lijin Liu, H Maths, José Dávila-Velderrain +8 more

ENCSR423KVL

ENCODE Datasets(2021)10.17989/encsr423kvl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR301OVI

ENCODE Datasets(2021)10.17989/encsr301ovi

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR749ZXL

ENCODE Datasets(2021)10.17989/encsr749zxl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR896DDV

ENCODE Datasets(2021)10.17989/encsr896ddv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR400ASA

ENCODE Datasets(2021)10.17989/encsr400asa

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR980ZKL

ENCODE Datasets(2021)10.17989/encsr980zkl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR065CDL

ENCODE Datasets(2021)10.17989/encsr065cdl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

O3‐11‐04: The role of DNA methylation in Alzheimer's susceptibility genes with Alzheimer's disease phenotypes

Alzheimer's & Dementia(2012)10.1016/j.jalz.2012.05.1203

N/A

0DataRank · unranked

0 citations

Gyan Srivastava, Richard S. Sandstrom, Alexander Meissner, Sharon L. R. Kardia, Adrian J. Ivinson +6 more

ENCSR907XTQ

ENCODE Datasets(2021)10.17989/encsr907xtq

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR887JRJ

ENCODE Datasets(2021)10.17989/encsr887jrj

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR522ZRF

ENCODE Datasets(2021)10.17989/encsr522zrf

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR299OXL

ENCODE Datasets(2021)10.17989/encsr299oxl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR144QVY

ENCODE Datasets(2021)10.17989/encsr144qvy

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Learning to estimate sample-specific transcriptional networks for 7,000 tumors

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2411930122

N/A

0DataRank · unranked

0 citations

Benjamin J. Lengerich, Thomas B. K. Watkins, Jiekun Yang, Abhinav K Adduri, Sazan Mahbub +6 more

Author response: Evolutionary principles of modular gene regulation in yeasts

(2013)10.7554/elife.00603.031

N/A

0DataRank · unranked

0 citations

Sushmita Roy, Mark P Styczynsky, Jenna Pfiffner, Courtney French, Amanda Socha +11 more

ENCSR363WRL

ENCODE Datasets(2021)10.17989/encsr363wrl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR597CEI

ENCODE Datasets(2021)10.17989/encsr597cei

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR878JNZ

ENCODE Datasets(2021)10.17989/encsr878jnz

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR762SPL

ENCODE Datasets(2021)10.17989/encsr762spl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR296TWJ

ENCODE Datasets(2021)10.17989/encsr296twj

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR330CQI

ENCODE Datasets(2021)10.17989/encsr330cqi

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR354NRU

ENCODE Datasets(2021)10.17989/encsr354nru

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR400BGV

ENCODE Datasets(2021)10.17989/encsr400bgv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR730TLV

ENCODE Datasets(2021)10.17989/encsr730tlv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR740LZL

ENCODE Datasets(2021)10.17989/encsr740lzl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR720ALI

ENCODE Datasets(2021)10.17989/encsr720ali

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR648EQZ

ENCODE Datasets(2021)10.17989/encsr648eqz

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR301HZV

ENCODE Datasets(2021)10.17989/encsr301hzv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR033TTL

ENCODE Datasets(2021)10.17989/encsr033ttl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR715HYH

ENCODE Datasets(2021)10.17989/encsr715hyh

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR100KHE

ENCODE Datasets(2021)10.17989/encsr100khe

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR940KLS

ENCODE Datasets(2021)10.17989/encsr940kls

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR654MGV

ENCODE Datasets(2021)10.17989/encsr654mgv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR458DPK

ENCODE Datasets(2021)10.17989/encsr458dpk

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Gene finding using multiple related species: a classification approach

Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics(2005)10.1002/047001153x.g402319

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR097KQL

ENCODE Datasets(2021)10.17989/encsr097kql

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR067HXV

ENCODE Datasets(2021)10.17989/encsr067hxv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR943KFP

ENCODE Datasets(2021)10.17989/encsr943kfp

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR029WUT

ENCODE Datasets(2021)10.17989/encsr029wut

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR324QRL

ENCODE Datasets(2021)10.17989/encsr324qrl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR746VJY

ENCODE Datasets(2021)10.17989/encsr746vjy

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR466AQL

ENCODE Datasets(2021)10.17989/encsr466aql

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR956LWJ

ENCODE Datasets(2021)10.17989/encsr956lwj

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR950HGV

ENCODE Datasets(2021)10.17989/encsr950hgv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR534TNH

ENCODE Datasets(2021)10.17989/encsr534tnh

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR965NAJ

ENCODE Datasets(2021)10.17989/encsr965naj

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR514RBI

ENCODE Datasets(2021)10.17989/encsr514rbi

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR974XDL

ENCODE Datasets(2021)10.17989/encsr974xdl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR340SEL

ENCODE Datasets(2021)10.17989/encsr340sel

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Single-cell dissection of the obesity-exercise axis in adipose-muscle tissues infers a critical role for mesenchymal stem cells

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.7011615

N/A

0DataRank · unranked

0 citations

Maria Vamvini, Pasquale Nigro, Laurie J. Goodyear, Sharon L. R. Kardia, Jiekun Yang

ENCSR572BJR

ENCODE Datasets(2021)10.17989/encsr572bjr

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR432KOD

ENCODE Datasets(2021)10.17989/encsr432kod

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR049TXI

ENCODE Datasets(2021)10.17989/encsr049txi

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR259ZKL

ENCODE Datasets(2021)10.17989/encsr259zkl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR105GVV

ENCODE Datasets(2021)10.17989/encsr105gvv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR887FGC

ENCODE Datasets(2021)10.17989/encsr887fgc

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR130IPA

ENCODE Datasets(2021)10.17989/encsr130ipa

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR151NFB

ENCODE Datasets(2021)10.17989/encsr151nfb

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR048UWE

ENCODE Datasets(2021)10.17989/encsr048uwe

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR317VXY

ENCODE Datasets(2021)10.17989/encsr317vxy

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR813LQR

ENCODE Datasets(2021)10.17989/encsr813lqr

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR620KBV

ENCODE Datasets(2021)10.17989/encsr620kbv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR064LML

ENCODE Datasets(2021)10.17989/encsr064lml

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR190MSL

ENCODE Datasets(2021)10.17989/encsr190msl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR196MPO

ENCODE Datasets(2021)10.17989/encsr196mpo

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR604YVM

ENCODE Datasets(2021)10.17989/encsr604yvm

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR756SDL

ENCODE Datasets(2021)10.17989/encsr756sdl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR827CPL

ENCODE Datasets(2021)10.17989/encsr827cpl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR741XHB

ENCODE Datasets(2021)10.17989/encsr741xhb

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR521LXX

ENCODE Datasets(2021)10.17989/encsr521lxx

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR425UPB

ENCODE Datasets(2021)10.17989/encsr425upb

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR140WKB

ENCODE Datasets(2021)10.17989/encsr140wkb

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR954VNH

ENCODE Datasets(2021)10.17989/encsr954vnh

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR714GXL

ENCODE Datasets(2021)10.17989/encsr714gxl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR182HRQ

ENCODE Datasets(2021)10.17989/encsr182hrq

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR730YRS

ENCODE Datasets(2021)10.17989/encsr730yrs

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR111HRV

ENCODE Datasets(2021)10.17989/encsr111hrv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR158MIF

ENCODE Datasets(2021)10.17989/encsr158mif

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR926HJX

ENCODE Datasets(2021)10.17989/encsr926hjx

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR445QYB

ENCODE Datasets(2021)10.17989/encsr445qyb

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

TFAP2C Safeguards Weismann's Barrier to Preserve Human Germline Identity During Primordial Germ Cell Specification from Lineage Primed Progenitors

SSRN Electronic Journal(2019)10.2139/ssrn.3443016

N/A

0DataRank · unranked

0 citations

Na Sun, Lei Hou, Rachel Kim, Jared Faith, Marianna Aslanyan +9 more

ENCSR746XLT

ENCODE Datasets(2021)10.17989/encsr746xlt

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR482MXL

ENCODE Datasets(2021)10.17989/encsr482mxl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR551SLL

ENCODE Datasets(2021)10.17989/encsr551sll

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR469FVB

ENCODE Datasets(2021)10.17989/encsr469fvb

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Sequences to systems

Genome Biology(2010)10.1186/gb-2010-11-5-303

N/A

0DataRank · unranked

0 citations

John L. Rinn, Sharon L. R. Kardia

ENCSR460DGT

ENCODE Datasets(2021)10.17989/encsr460dgt

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR402SDL

ENCODE Datasets(2021)10.17989/encsr402sdl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR611DRV

ENCODE Datasets(2021)10.17989/encsr611drv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR336QLE

ENCODE Datasets(2021)10.17989/encsr336qle

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR743HGV

ENCODE Datasets(2021)10.17989/encsr743hgv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Disparities and trends in global representation of human genetics conferences: a 26-year longitudinal study of ASHG and ESHG

medRxiv(2025)10.1101/2025.08.12.25333491

N/A

0DataRank · unranked

0 citations

Vishal S. Chandan, Yosuke Tanigawa, Jue Sheng Ong, Stuart MacGregor, Liming Liang +5 more

Melanoma to rhabdomyosarcoma plasticity in the setting of immunotherapy

(2025)10.1101/2025.10.31.25338685

N/A

0DataRank · unranked

0 citations

Dennie T. Frederick, Alvin Shi, Ana B. Larque, Benchun Miao, Tatyana Sharova +16 more

ENCSR696JDV

ENCODE Datasets(2021)10.17989/encsr696jdv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR961HHL

ENCODE Datasets(2021)10.17989/encsr961hhl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR429MUF

ENCODE Datasets(2021)10.17989/encsr429muf

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR089WUN

ENCODE Datasets(2021)10.17989/encsr089wun

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR595CKV

ENCODE Datasets(2021)10.17989/encsr595ckv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR171OMI

ENCODE Datasets(2021)10.17989/encsr171omi

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR173QMV

ENCODE Datasets(2021)10.17989/encsr173qmv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR946LIM

ENCODE Datasets(2021)10.17989/encsr946lim

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR022PBI

ENCODE Datasets(2021)10.17989/encsr022pbi

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Preface: RECOMB/ISCB Systems Biology, Regulatory Genomics, and DREAM 2014 Special Issue

Journal of Computational Biology(2015)10.1089/cmb.2015.020p

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia, Gustavo Stolovitzky, Andrea Califano

ENCSR065WOW

ENCODE Datasets(2021)10.17989/encsr065wow

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR439KMT

ENCODE Datasets(2021)10.17989/encsr439kmt

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR175NQL

ENCODE Datasets(2021)10.17989/encsr175nql

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR763OIH

ENCODE Datasets(2021)10.17989/encsr763oih

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR018VMO

ENCODE Datasets(2021)10.17989/encsr018vmo

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR322EWI

ENCODE Datasets(2021)10.17989/encsr322ewi

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR354GEH

ENCODE Datasets(2021)10.17989/encsr354geh

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR949XKL

ENCODE Datasets(2021)10.17989/encsr949xkl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR643QEC

ENCODE Datasets(2021)10.17989/encsr643qec

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR355MGV

ENCODE Datasets(2021)10.17989/encsr355mgv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR075DSV

ENCODE Datasets(2021)10.17989/encsr075dsv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR115JGO

ENCODE Datasets(2021)10.17989/encsr115jgo

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR944IHS

ENCODE Datasets(2021)10.17989/encsr944ihs

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR933ACN

ENCODE Datasets(2021)10.17989/encsr933acn

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR766YDL

ENCODE Datasets(2021)10.17989/encsr766ydl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR836REI

ENCODE Datasets(2021)10.17989/encsr836rei

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Deep learning modeling of ribosome profiling reveals regulatory underpinnings of translatome and interprets disease variants

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.26.582217

N/A

0DataRank · unranked

0 citations

Lei Xiong, Shaohui Shi, Chengyu Li, Kexuan Chen, Qianchen Fang +9 more

ENCSR636FDG

ENCODE Datasets(2021)10.17989/encsr636fdg

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR384DPH

ENCODE Datasets(2021)10.17989/encsr384dph

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR432YRV

ENCODE Datasets(2021)10.17989/encsr432yrv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR593ZNP

ENCODE Datasets(2021)10.17989/encsr593znp

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR531IWW

ENCODE Datasets(2021)10.17989/encsr531iww

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR171KAT

ENCODE Datasets(2021)10.17989/encsr171kat

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Genomic analyses identify hundreds of variants associated with age at menarche and support a role for puberty timing in cancer risk

UNC Libraries(2020)10.17615/2bje-6g29

N/A

0DataRank · unranked

0 citations

Deborah J. Thompson, Hannes Helgason, Timothy M. Frayling, Hilary K. Finucane, Patrick Sulem +211 more

ENCSR080EQW

ENCODE Datasets(2021)10.17989/encsr080eqw

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR930CQL

ENCODE Datasets(2021)10.17989/encsr930cql

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Experimental evidence for embedded cis-regulatory enhancers within Hox protein-coding regions

Developmental Biology(2011)10.1016/j.ydbio.2011.05.492

N/A

0DataRank · unranked

0 citations

Youngwook Ahn, Alireza Heravi-Moussavi, Sharon L. R. Kardia, Robb Krumlauf, Tara B. Alexander

ENCSR181XXL

ENCODE Datasets(2021)10.17989/encsr181xxl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR123GFG

ENCODE Datasets(2021)10.17989/encsr123gfg

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR011FBV

ENCODE Datasets(2021)10.17989/encsr011fbv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR481LMF

ENCODE Datasets(2021)10.17989/encsr481lmf

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR031AZL

ENCODE Datasets(2021)10.17989/encsr031azl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR746MSY

ENCODE Datasets(2021)10.17989/encsr746msy

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Single-cell and spatial characterization of ischemic heart disease and heart failure from ex-vivo biopsies reveals inflammatory and vascular changes in the right atrium

Atherosclerosis(2023)10.1016/j.atherosclerosis.2023.06.932

N/A

0DataRank · unranked

0 citations

K. Galani, Prosanta K. Singha, K. Harju, Guillermo Garcia-Cardeña, Eloi Schmauch +23 more

ENCSR546XDS

ENCODE Datasets(2021)10.17989/encsr546xds

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR862EHV

ENCODE Datasets(2021)10.17989/encsr862ehv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR372LDR

ENCODE Datasets(2021)10.17989/encsr372ldr

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR731LHV

ENCODE Datasets(2021)10.17989/encsr731lhv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR361GVI

ENCODE Datasets(2021)10.17989/encsr361gvi

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR299URG

ENCODE Datasets(2021)10.17989/encsr299urg

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Predicting trait regulators by identifying co-localization of DNA binding and GWAS variants in regulatory regions

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/467852

N/A

0DataRank · unranked

0 citations

Soheil Feizi, Daniel Marbach, Melina Claussnitzer, Sharon L. R. Kardia, Richard Sandstrom

ENCSR126KLQ

ENCODE Datasets(2021)10.17989/encsr126klq

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR782BPD

ENCODE Datasets(2021)10.17989/encsr782bpd

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR617PZL

ENCODE Datasets(2021)10.17989/encsr617pzl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR376ROO

ENCODE Datasets(2021)10.17989/encsr376roo

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR963MZL

ENCODE Datasets(2021)10.17989/encsr963mzl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR201MRI

ENCODE Datasets(2021)10.17989/encsr201mri

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR103FVK

ENCODE Datasets(2021)10.17989/encsr103fvk

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR441QHL

ENCODE Datasets(2021)10.17989/encsr441qhl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

PRISM: ancestry-aware integration of tissue-specific genomic annotations enhances the transferability of polygenic scores

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.13.688144

N/A

0DataRank · unranked

0 citations

Tabassum Fabiha, William F Li, Kushal K. Dey, Sharon L. R. Kardia, Yosuke Tanigawa +1 more

ENCSR111YAF

ENCODE Datasets(2021)10.17989/encsr111yaf

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR149TFQ

ENCODE Datasets(2021)10.17989/encsr149tfq

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR761HVI

ENCODE Datasets(2021)10.17989/encsr761hvi

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR574DQL

ENCODE Datasets(2021)10.17989/encsr574dql

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR111HVL

ENCODE Datasets(2021)10.17989/encsr111hvl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR748GKL

ENCODE Datasets(2021)10.17989/encsr748gkl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR519JOK

ENCODE Datasets(2021)10.17989/encsr519jok

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR377JZL

ENCODE Datasets(2021)10.17989/encsr377jzl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR919BXV

ENCODE Datasets(2021)10.17989/encsr919bxv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR205CKL

ENCODE Datasets(2021)10.17989/encsr205ckl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR051GLL

ENCODE Datasets(2021)10.17989/encsr051gll

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR130IJZ

ENCODE Datasets(2021)10.17989/encsr130ijz

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Mediation analysis, multi-tissue factor QTLs, EHRs, transfer learning in deep CNNs for genetics

Open Collections(2017)10.14288/1.0355758

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR607PCD

ENCODE Datasets(2021)10.17989/encsr607pcd

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR912HFW

ENCODE Datasets(2021)10.17989/encsr912hfw

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR612VNI

ENCODE Datasets(2021)10.17989/encsr612vni

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR255CGV

ENCODE Datasets(2021)10.17989/encsr255cgv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR481CZN

ENCODE Datasets(2021)10.17989/encsr481czn

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR637BDT

ENCODE Datasets(2021)10.17989/encsr637bdt

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR726BWT

ENCODE Datasets(2021)10.17989/encsr726bwt

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR827EKL

ENCODE Datasets(2021)10.17989/encsr827ekl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR003HGV

ENCODE Datasets(2021)10.17989/encsr003hgv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR678SLZ

ENCODE Datasets(2021)10.17989/encsr678slz

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR595JFQ

ENCODE Datasets(2021)10.17989/encsr595jfq

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR275UZU

ENCODE Datasets(2021)10.17989/encsr275uzu

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR063GJJ

ENCODE Datasets(2021)10.17989/encsr063gjj

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR786FLV

ENCODE Datasets(2021)10.17989/encsr786flv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Publisher Correction: The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

Genome Biology(2025)10.1186/s13059-025-03494-w

N/A

0DataRank · unranked

0 citations

Carles B. Adsera, Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang +45 more

ENCSR181PSF

ENCODE Datasets(2021)10.17989/encsr181psf

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

A versatile informative diffusion model for single-cell ATAC-seq data generation and analysis

arXiv (Cornell University)(2024)10.48550/arxiv.2408.14801

N/A

0DataRank · unranked

0 citations

Lei Xiong, Na Sun, Zunpeng Liu, Ka‐Chun Wong, Sharon L. R. Kardia +1 more

ENCSR549KCD

ENCODE Datasets(2021)10.17989/encsr549kcd

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR888AZU

ENCODE Datasets(2021)10.17989/encsr888azu

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR946GFM

ENCODE Datasets(2021)10.17989/encsr946gfm

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR261DXL

ENCODE Datasets(2021)10.17989/encsr261dxl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR392DRB

ENCODE Datasets(2021)10.17989/encsr392drb

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR294TIC

ENCODE Datasets(2021)10.17989/encsr294tic

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR000FIW

ENCODE Datasets(2021)10.17989/encsr000fiw

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR314NTQ

ENCODE Datasets(2021)10.17989/encsr314ntq

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR343TPP

ENCODE Datasets(2021)10.17989/encsr343tpp

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans

UNC Libraries(2020)10.17615/3we9-ae42

Top 100%

0DataRank

Top 100%0 citations

David S. DeLuca, Ayellet V. Segrè, Timothy J. Sullivan, Timothy R. Young, Ellen T. Gelfand +27 more

ENCSR233NHL

ENCODE Datasets(2021)10.17989/encsr233nhl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR701FGV

ENCODE Datasets(2021)10.17989/encsr701fgv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR393XIG

ENCODE Datasets(2021)10.17989/encsr393xig

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR266TRV

ENCODE Datasets(2021)10.17989/encsr266trv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR617MDG

ENCODE Datasets(2021)10.17989/encsr617mdg

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR151ZNT

ENCODE Datasets(2021)10.17989/encsr151znt

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR953GNS

ENCODE Datasets(2021)10.17989/encsr953gns

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

5. INTEGRATION OF GENETIC, EPIGENOMIC, AND PHENOTYPIC DATA ELUCIDATES ROLES OF CIRCULATING IMMUNE CELLS IN BIPOLAR DISORDER

European Neuropsychopharmacology(2023)10.1016/j.euroneuro.2023.08.116

N/A

0DataRank · unranked

0 citations

Yue Li, Xushen Xiong, Yongjin Park, Samuel Lenz, Amy Grayson +13 more

ENCSR280CZL

ENCODE Datasets(2021)10.17989/encsr280czl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR359VRW

ENCODE Datasets(2021)10.17989/encsr359vrw

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR684XQE

ENCODE Datasets(2021)10.17989/encsr684xqe

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR421RNA

ENCODE Datasets(2021)10.17989/encsr421rna

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR057XRF

ENCODE Datasets(2021)10.17989/encsr057xrf

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR839KWU

ENCODE Datasets(2021)10.17989/encsr839kwu

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR349CBV

ENCODE Datasets(2021)10.17989/encsr349cbv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR279QGZ

ENCODE Datasets(2021)10.17989/encsr279qgz

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR396NQB

ENCODE Datasets(2021)10.17989/encsr396nqb

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR963NGB

ENCODE Datasets(2021)10.17989/encsr963ngb

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR857XDV

ENCODE Datasets(2021)10.17989/encsr857xdv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR428OUF

ENCODE Datasets(2021)10.17989/encsr428ouf

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR238NAL

ENCODE Datasets(2021)10.17989/encsr238nal

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR709BDL

ENCODE Datasets(2021)10.17989/encsr709bdl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR281GZL

ENCODE Datasets(2021)10.17989/encsr281gzl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR332CMQ

ENCODE Datasets(2021)10.17989/encsr332cmq

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR534ZUC

ENCODE Datasets(2021)10.17989/encsr534zuc

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Reviewer #1 (Public Review): Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

(2023)10.7554/elife.87866.1.sa2

N/A

0DataRank · unranked

0 citations

Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T. J. van Velthoven, Heather A. Sullivan +7 more

ENCSR768TRH

ENCODE Datasets(2021)10.17989/encsr768trh

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR361LHV

ENCODE Datasets(2021)10.17989/encsr361lhv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR170PXL

ENCODE Datasets(2021)10.17989/encsr170pxl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR295SDR

ENCODE Datasets(2021)10.17989/encsr295sdr

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR701EYZ

ENCODE Datasets(2021)10.17989/encsr701eyz

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR202CBV

ENCODE Datasets(2021)10.17989/encsr202cbv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR625RDB

ENCODE Datasets(2021)10.17989/encsr625rdb

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR378KTL

ENCODE Datasets(2021)10.17989/encsr378ktl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Interpretable deep generative ensemble learning for single-cell omics with Hydra

(2025)10.1101/2025.08.15.670517

N/A

0DataRank · unranked

0 citations

Richard Durbin, Zunpeng Liu, Yongheng Wang, Sharon L. R. Kardia, Ellis Patrick +2 more

ENCSR010UXL

ENCODE Datasets(2021)10.17989/encsr010uxl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR024FLV

ENCODE Datasets(2021)10.17989/encsr024flv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Additional file 3: Table S1. of Evidence of reduced recombination rate in human regulatory domains

Figshare(2017)10.6084/m9.figshare.c.3911476_d3

Top 100%

0DataRank

Top 100%0 citations

Abhishek Sarkar, Yanxiao Zhang, Jason Ernst, Sharon L. R. Kardia, Yaping Liu

ENCSR746XCS

ENCODE Datasets(2021)10.17989/encsr746xcs

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR873AZX

ENCODE Datasets(2021)10.17989/encsr873azx

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR174RRR

ENCODE Datasets(2021)10.17989/encsr174rrr

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR713CLL

ENCODE Datasets(2021)10.17989/encsr713cll

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR135QMM

ENCODE Datasets(2021)10.17989/encsr135qmm

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR629UPP

ENCODE Datasets(2021)10.17989/encsr629upp

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR353XAA

ENCODE Datasets(2021)10.17989/encsr353xaa

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR330KLV

ENCODE Datasets(2021)10.17989/encsr330klv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR496SKF

ENCODE Datasets(2021)10.17989/encsr496skf

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR981BLB

ENCODE Datasets(2021)10.17989/encsr981blb

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Single-cell RNA sequencing data imputation using bi-level feature propagation

UNC Libraries(2025)10.17615/3wxb-tq32

N/A

0DataRank · unranked

0 citations

Sang‐Ho Yun, Yeongmin Kim, Tianlong Chen, Sharon L. R. Kardia, Chanyoung Park +1 more

ENCSR512GXV

ENCODE Datasets(2021)10.17989/encsr512gxv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR023KBV

ENCODE Datasets(2021)10.17989/encsr023kbv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR755WRV

ENCODE Datasets(2021)10.17989/encsr755wrv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR973IXL

ENCODE Datasets(2021)10.17989/encsr973ixl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR538KKI

ENCODE Datasets(2021)10.17989/encsr538kki

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR122KKL

ENCODE Datasets(2021)10.17989/encsr122kkl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR684TEB

ENCODE Datasets(2021)10.17989/encsr684teb

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR378BAE

ENCODE Datasets(2021)10.17989/encsr378bae

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR242PGL

ENCODE Datasets(2021)10.17989/encsr242pgl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR684MVI

ENCODE Datasets(2021)10.17989/encsr684mvi

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR154TXV

ENCODE Datasets(2021)10.17989/encsr154txv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR104RHV

ENCODE Datasets(2021)10.17989/encsr104rhv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR415VXB

ENCODE Datasets(2021)10.17989/encsr415vxb

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR673AXI

ENCODE Datasets(2021)10.17989/encsr673axi

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR422DRV

ENCODE Datasets(2021)10.17989/encsr422drv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR742GDG

ENCODE Datasets(2021)10.17989/encsr742gdg

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR991AZL

ENCODE Datasets(2021)10.17989/encsr991azl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR178JSO

ENCODE Datasets(2021)10.17989/encsr178jso

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR372UCT

ENCODE Datasets(2021)10.17989/encsr372uct

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR257UKI

ENCODE Datasets(2021)10.17989/encsr257uki

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR158AXL

ENCODE Datasets(2021)10.17989/encsr158axl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR291WFG

ENCODE Datasets(2021)10.17989/encsr291wfg

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR167PFT

ENCODE Datasets(2021)10.17989/encsr167pft

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR015GRV

ENCODE Datasets(2021)10.17989/encsr015grv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR138HXV

ENCODE Datasets(2021)10.17989/encsr138hxv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR499ZZL

ENCODE Datasets(2021)10.17989/encsr499zzl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR616NWN

ENCODE Datasets(2021)10.17989/encsr616nwn

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR224JGF

ENCODE Datasets(2021)10.17989/encsr224jgf

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR441XNH

ENCODE Datasets(2021)10.17989/encsr441xnh

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR609YDL

ENCODE Datasets(2021)10.17989/encsr609ydl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR127GDV

ENCODE Datasets(2021)10.17989/encsr127gdv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Cardiovascular Disease Causes Proinflammatory Microvascular Changes in the Human Right Atrium

SSRN Electronic Journal(2023)10.2139/ssrn.4353420

N/A

0DataRank · unranked

0 citations

Eloi Schmauch, Kiki Galani, Johannes Ojanen, Tiit Örd, Anu Toropainen +26 more

ENCSR531JRT

ENCODE Datasets(2021)10.17989/encsr531jrt

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR211XOL

ENCODE Datasets(2021)10.17989/encsr211xol

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

Additional file 1: Figure S1. of Evidence of reduced recombination rate in human regulatory domains

Figshare(2017)10.6084/m9.figshare.c.3911476_d1

N/A

0DataRank · unranked

0 citations

Abhishek Sarkar, Yanxiao Zhang, Jason Ernst, Sharon L. R. Kardia, Yaping Liu

Author Response: Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

(2024)10.7554/elife.87866.2.sa4

N/A

0DataRank · unranked

0 citations

Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T. J. van Velthoven, Na Sun +6 more

Author response: Discovery and validation of sub-threshold genome-wide association study loci using epigenomic signatures

(2016)10.7554/elife.10557.031

N/A

0DataRank · unranked

0 citations

Nathan R. Tucker, Gizem Rizki, Robert Mills, Peter H.L. Krijger, Elzo de Wit +18 more

ENCSR245JDV

ENCODE Datasets(2021)10.17989/encsr245jdv

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR842OQL

ENCODE Datasets(2021)10.17989/encsr842oql

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR791OXL

ENCODE Datasets(2021)10.17989/encsr791oxl

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR297DNA

ENCODE Datasets(2021)10.17989/encsr297dna

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR853DPH

ENCODE Datasets(2021)10.17989/encsr853dph

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR641BAV

ENCODE Datasets(2021)10.17989/encsr641bav

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia

ENCSR958GGI

ENCODE Datasets(2021)10.17989/encsr958ggi

N/A

0DataRank · unranked

0 citations

Sharon L. R. Kardia