Stephen C.J. Parker

Barcelona Biomedical Research Park

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

52.7Author DataRank

Indexed papers

11in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 11 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Papers

Driven by 61 papers — median percentile 92. Top paper: “Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project”.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Genetic effects on gene expression across human tissues

Nature(2017)10.1038/nature24277

Top 1%

10.1DataRank

Top 1%4706 citations

Barbara E. Engelhardt, Stephen B. Montgomery, Sara Mostafavi, Ayellet V. Segrè, Hailei Zhang +227 more

Integrative analysis of 111 reference human epigenomes

Nature(2015)10.1038/nature14248

Top 1%

10.0DataRank

Top 1%7189 citations

Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen +93 more

A comparative encyclopedia of DNA elements in the mouse genome

Nature(2014)10.1038/nature13992

Top 2%

7.9DataRank

Top 2%1946 citations

Yong Cheng, Alessandra Breschi, Jost Vielmetter, Weisheng Wu, Tyrone Ryba +150 more

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Transcriptomic signatures across human tissues identify functional rare genetic variation

Science(2020)10.1126/science.aaz5900

N/A

5.0DataRank · unranked

166 citations

Benjamin J. Strober, Jonah Einson, Nathan S. Abell, François Aguet, Alvaro N. Barbeira +183 more

A vast resource of allelic expression data spanning human tissues

Genome Biology(2020)10.1186/s13059-020-02122-z

Top 8%

2.7DataRank

Top 8%147 citations

François Aguet, Pejman Mohammadi, Kristin G. Ardlie, Anthony Philippakis, Leanne Haggerty +159 more

Genetic variant effects on gene expression in human pancreatic islets and their implications for T2D

Nature Communications(2020)10.1038/s41467-020-18581-8

N/A

2.4DataRank · unranked

164 citations

Arushi Varshney, Martijn van de Bunt, Rashmi B. Prasad, Olof Asplund, Amanda J. Bennett +31 more

Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits

Genome Research(2021)10.1101/gr.268482.120

Top 11%

1.9DataRank

Top 11%61 citations

Nandini Manickam, Christa Ventresca, Swarooparani Vadlamudi, Arushi Varshney, Vivek Rai +7 more

Genetic effects on liver chromatin accessibility identify disease regulatory variants

The American Journal of Human Genetics(2021)10.1016/j.ajhg.2021.05.001

N/A

1.6DataRank · unranked

70 citations

Michael R. Erdos, Narisu Narisu, Vivek Rai, Swarooparani Vadlamudi, Hannah J. Perrin +41 more

ACE2 expression in adipose tissue is associated with cardio-metabolic risk factors and cell type composition—implications for COVID-19

International Journal of Obesity(2022)10.1038/s41366-022-01136-w

N/A

1.3DataRank · unranked

44 citations

Anne Jackson, Sarah M. Brotman, Li Guan, Sergio Villicaña, Amy L. Roberts +31 more

The accessible chromatin landscape of the human genome

Nature(2012)10.1038/nature11232

N/A

1.2DataRank · unranked

2882 citations

Eric Rynes, Richard Humbert, Jost Vielmetter, Matthew T. Maurano, Eric Haugen +57 more

The genetic architecture of type 2 diabetes

Nature(2016)10.1038/nature18642

N/A

1.1DataRank · unranked

1106 citations

Menachem Fromer, Tanya M. Teslovich, Anubha Mahajan, Vineeta Agarwala, Kyle J. Gaulton +334 more

An expansive human regulatory lexicon encoded in transcription factor footprints

Nature(2012)10.1038/nature11212

N/A

1.0DataRank · unranked

802 citations

Jost Vielmetter, Andrew B. Stergachis, Alex P. Reynolds, Eric Haugen, Benjamin Vernot +36 more

Loci for insulin processing and secretion provide insight into type 2 diabetes risk

The American Journal of Human Genetics(2023)10.1016/j.ajhg.2023.01.002

N/A

0.984DataRank · unranked

46 citations

Xianyong Yin, Alice Williamson, Victoria A. Parsons, Emma P Wilson, Anne H. Moxley +66 more

Comparative analysis of metazoan chromatin organization

Nature(2014)10.1038/nature13415

N/A

0.910DataRank · unranked

429 citations

Youngsook L. Jung, Tao Liu, Burak H. Alver, Soohyun Lee, Kohta Ikegami +83 more

Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease

Cell(2021)10.1016/j.cell.2021.03.050

N/A

0.804DataRank · unranked

212 citations

Daniel C. Nachun, Nicole M. Ferraro, Michael J. Gloudemans, Abhiram S. Rao, Craig Smail +168 more

Local DNA Topography Correlates with Functional Noncoding Regions of the Human Genome

Science(2009)10.1126/science.1169050

N/A

0.803DataRank · unranked

211 citations

Loren Hansen, Hatice Ozel Abaan, Thomas D. Tullius, Eoghan Harrington, Stephen C.J. Parker +2 more

Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv

Cell Systems(2020)10.1016/j.cels.2020.02.009

N/A

0.689DataRank · unranked

98 citations

Yasuhiro Kyono, John Hensley, Jacob O. Kitzman, Stephen C.J. Parker, Peter Orchard

Genomic and phenotypic correlates of mosaic loss of chromosome Y in blood

The American Journal of Human Genetics(2025)10.1016/j.ajhg.2024.12.014

N/A

0.605DataRank · unranked

14 citations

Xiaolong Ma, Adrienne M. Stilp, Fulong Yu, Jason Bacon, Justin Wong +64 more

Whole genome sequence association analysis of fasting glucose and fasting insulin levels in diverse cohorts from the NHLBI TOPMed program

Communications Biology(2022)10.1038/s42003-022-03702-4

Top 34%

0.582DataRank

Top 34%16 citations

Sheila M. Gaynor, Emily M. Russell, Kenneth E. Westerman, Laura M. Raffield, Timothy D. Majarian +88 more

Combinatorial transcription factor profiles predict mature and functional human islet α and β cells

JCI Insight(2021)10.1172/jci.insight.151621

N/A

0.581DataRank · unranked

47 citations

Diane C. Saunders, John T. Walker, Joan Camuñas-Soler, Xiao-Qing Dai, Rachana Haliyur +12 more

Human vascularized macrophage-islet organoids to model immune-mediated pancreatic β cell pyroptosis upon viral infection

Cell stem cell(2024)10.1016/j.stem.2024.08.007

N/A

0.568DataRank · unranked

43 citations

Yuling Han, Tuo Zhang, Xue Dong, Jian Ge, Aadita Roy +17 more

Noncoding variants alter GATA2 expression in rhombomere 4 motor neurons and cause dominant hereditary congenital facial paresis

Nature Genetics(2023)10.1038/s41588-023-01424-9

N/A

0.550DataRank · unranked

38 citations

Silvio Alessandro Di Gioia, Bryn D. Webb, Wai‐Man Chan, Elke de Boer, Sarah J. Garnai +53 more

CHD7 promotes neural progenitor differentiation in embryonic stem cells via altered chromatin accessibility and nascent gene expression

Scientific Reports(2020)10.1038/s41598-020-74537-4

N/A

0.546DataRank · unranked

37 citations

D. Ford Hannum, Yiwen Zhai, Sophie F. Hill, Ricardo D’Oliveira Albanus, Wenjia Lou +9 more

FixItFelix: improving genomic analysis by fixing reference errors

Genome biology(2023)10.1186/s13059-023-02863-7

N/A

0.500DataRank · unranked

27 citations

Jonathon LeFaive, Peter Orchard, Medhat Mahmoud, Luis F. Paulin, Jesse Farek +7 more

Adipose tissue eQTL meta-analysis highlights the contribution of allelic heterogeneity to gene expression regulation and cardiometabolic traits

Nature Genetics(2025)10.1038/s41588-024-01982-6

N/A

0.477DataRank · unranked

23 citations

Julia S. El-Sayed Moustafa, Li Guan, K. Alaine Broadaway, Dongmeng Wang, Anne Jackson +29 more

Adipose tissue eQTL meta-analysis reveals the contribution of allelic heterogeneity to gene expression regulation and cardiometabolic traits

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.26.563798

N/A

0.440DataRank · unranked

13 citations

Julia S. El-Sayed Moustafa, Li Guan, K. Alaine Broadaway, Dongmeng Wang, Anne Jackson +29 more

Extensive differential gene expression and regulation by sex in human skeletal muscle

Cell Genomics(2025)10.1016/j.xgen.2025.100915

N/A

0.396DataRank · unranked

13 citations

Abigail S. Mauger, Arushi Varshney, Dan L. Ciotlos, Nandini Manickam, Narisu Narisu +20 more

ACE2 expression in adipose tissue is associated with COVID-19 cardio-metabolic risk factors and cell type composition

medRxiv(2020)10.1101/2020.08.11.20171108

N/A

0.385DataRank · unranked

12 citations

Anne Jackson, Sarah M. Brotman, Li Guan, Sergio Villicaña, Amy L. Roberts +21 more

An integrative single-cell multi-omics profiling of human pancreatic islets identifies T1D associated genes and regulatory signals

Research Square(2023)10.21203/rs.3.rs-3343318/v1

N/A

0.385DataRank · unranked

12 citations

Zeping Zhao, Ricardo D’Oliveira Albanus, Henry J. Taylor, Xuming Tang, Yuling Han +16 more

Molecular responses in abdominal subcutaneous adipose tissue after a session of endurance exercise: effects of exercise intensity

The Journal of Physiology(2025)10.1113/jp289339

N/A

0.316DataRank · unranked

6 citations

Tao Zhang, Thomas Rode, Gayoung Yang, Olivia K. Chugh, Sierra Ellis +8 more

Integrative single-cell multi-omics profiling of human pancreatic islets identifies T1D-associated genes and regulatory signals

Cell Reports(2025)10.1016/j.celrep.2025.116065

N/A

0.312DataRank · unranked

7 citations

Xiaoshan Zhang, Zeping Zhao, Henry J. Taylor, Xuming Tang, Yuling Han +18 more

CNTools: A computational toolbox for cellular neighborhood analysis from multiplexed images

PLoS Computational Biology(2024)10.1371/journal.pcbi.1012344

N/A

0.312DataRank · unranked

7 citations

Fan Feng, Xin Luo, Conrad Reihsmann, Alexander L. Hopkirk, Jeeyeon Cha +5 more

Genetic effects on chromatin accessibility uncover mechanisms of liver gene regulation and quantitative traits

Genome Research(2025)10.1101/gr.279741.124

N/A

0.283DataRank · unranked

5 citations

Hannah J. Perrin, Gautam Kumar Pandey, Abdalla A Alkhawaja, Swarooparani Vadlamudi, Annie E Musser +14 more

Genomic and phenotypic correlates of mosaic loss of chromosome Y in blood

medRxiv(2024)10.1101/2024.04.16.24305851

N/A

0.241DataRank · unranked

4 citations

Xiaolong Ma, Adrienne M. Stilp, Fulong Yu, Jason Bacon, Justin Wong +61 more

Fixing reference errors efficiently improves sequencing results

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.18.500506

Top 65%

0.208DataRank

Top 65%3 citations

Jonathon LeFaive, Peter Orchard, Medhat Mahmoud, Luis F. Paulin, Jesse Farek +7 more

Single-cell gene expression and chromatin accessibility profiling of human pancreatic islets at basal and stimulatory conditions nominates mechanisms of type 1 diabetes genetic risk

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.12.516291

N/A

0.208DataRank · unranked

3 citations

Xuming Tang, Henry J. Taylor, Nandini Manickam, Michael R. Erdos, Narisu Narisu +9 more

Accelerating Medicines Partnership in Type 2 Diabetes and Common Metabolic Diseases: Collaborating to Maximize the Value of Genetic and Genomic Data

Diabetes(2025)10.2337/db25-0042

N/A

0.208DataRank · unranked

3 citations

Beena Akolkar, Melina Claussnitzer, Jose C. Florez, Anna L. Gloyn, Struan F.A. Grant +15 more

Efferocytosis-induced metabolic shift in bone macrophages drives lactate production and modulates inflammation and osteoclastogenesis

Frontiers in Immunology(2025)10.3389/fimmu.2025.1650465

N/A

0.208DataRank · unranked

3 citations

Nicholas J. Carruthers, Amy J. Koh, Gabriel G. Kleer, Kotoba Nakamura, Stephen C.J. Parker +3 more

Human Vascularized Macrophage-Islet Organoids to Model Immune-Mediated Pancreatic β cell Pyroptosis upon Viral Infection

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.05.606734

N/A

0.104DataRank · unranked

1 citations

Yuling Han, Tuo Zhang, Xue Dong, Jian Ge, Aadita Roy +17 more

Skeletal muscle eQTL meta-analysis implicates genes in the genetic architecture of muscular and cardiometabolic traits

The American Journal of Human Genetics(2025)10.1016/j.ajhg.2025.09.003

N/A

0.104DataRank · unranked

1 citations

K. Alaine Broadaway, Victoria A. Parsons, Swarooparani Vadlamudi, Narisu Narisu, Sarah M. Brotman +15 more

Three-dimensional chromatin re-organization during muscle stem cell aging

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.21.508601

N/A

0.104DataRank · unranked

1 citations

Jacqueline Larouche, K. Sabin, Paula Fraczek, Stephen C.J. Parker, Carlos A. Aguilar +1 more

Combinatorial transcription factor profiles predict mature and functional human islet α and β cells

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.23.432522

N/A

0DataRank · unranked

3 citations

Diane C. Saunders, John T. Walker, Joan Camuñas-Soler, Xiao-Qing Dai, Rachana Haliyur +12 more

Whole genome sequence association analysis of fasting glucose and fasting insulin levels in diverse cohorts from the NHLBI TOPMed program

UNC Libraries(2024)10.17615/75fz-j027

Top 100%

0DataRank

Top 100%0 citations

J.E. Curran, S.L.R. Kardia, Márcio Rodrigues de Almeida, J.B. Meigs, M.R. Irvin +88 more

eLife Assessment: 3D genomic features across >50 diverse cell types reveal insights into the genomic architecture of childhood obesity

(2024)10.7554/elife.95411.1.sa2

N/A

0DataRank · unranked

0 citations

Stephen C.J. Parker

Retrograde mitochondrial signaling governs the identity and maturity of metabolic tissues

Science(2025)10.1126/science.adf2034

N/A

0DataRank · unranked

61 citations

Gemma L. Pearson, Nathan Lawlor, Ava M. Stendahl, Anne Lietzke, Vaibhav Sidarala +25 more

Multi-omic profiling of pituitary thyrotropic cells and progenitors

BMC Biology(2021)10.1186/s12915-021-01009-0

N/A

0DataRank · unranked

8 citations

Lindsey Anne Dudley, Michael T. Peel, Stephen A. Liebhaber, Stephen C.J. Parker, Sally A. Camper +1 more

A Transcription Start Site Map in Human Pancreatic Islets Reveals Functional Regulatory Signatures

Diabetes(2021)10.2337/db20-1087

N/A

0DataRank · unranked

13 citations

Yasuhiro Kyono, Venkateswaran Ramamoorthi Elangovan, Collin Wang, Michael R. Erdos, Narisu Narisu +7 more

Retrograde mitochondrial signaling governs the identity and maturity of metabolic tissues

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.02.502357

N/A

0DataRank · unranked

4 citations

Emily M. Walker, Nathan Lawlor, Anne Lietzke, Vaibhav Sidarala, Jie Zhu +24 more

Comparative analysis of metazoan chromatin organization

DSpace@MIT (Massachusetts Institute of Technology)(2020)10.17615/6z12-pm44

N/A

0DataRank · unranked

0 citations

Dalal Asker, Artyom A. Alekseyenko, Eric M. Bishop, Ron A.-J. Chen, Anshul Kundaje +27 more

Identification of pituitary thyrotrope signature genes and regulatory elements

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.05.238253

N/A

0DataRank · unranked

0 citations

Lindsey Anne Dudley, Michael T. Peel, Stephen A. Liebhaber, Stephen C.J. Parker, Sally A. Camper +1 more

Genomic and phenotypic correlates of mosaic loss of chromosome Y in blood

UNC Libraries(2025)10.17615/5tss-f273

N/A

0DataRank · unranked

0 citations

Eric Boerwinkle, Yash Pershad, K.E. North, Fulong Yu, Center, Regeneron Genetics +66 more

Adipose tissue eQTL meta-analysis highlights the contribution of allelic heterogeneity to gene expression regulation and cardiometabolic traits

UNC Libraries(2025)10.17615/vj0s-7k07

N/A

0DataRank · unranked

0 citations

Chelsea K. Raulerson, Kerrin S. Small, Julia S. El-Sayed Moustafa, Sarah M. Brotman, Laura J. Scott +29 more

CelLink: integrating single-cell multi-omics data with weak feature linkage and imbalanced cell populations

Nucleic Acids Research(2025)10.1093/nar/gkaf1270

N/A

0DataRank · unranked

1 citations

Yuanhao Huang, Haoxuan Zeng, Yicheng Tao, Xinyu Bao, Fan Feng +13 more

BAF60a deficiency uncouples chromatin accessibility and cold sensitivity from white fat browning

Nature Communications(2020)10.1038/s41467-020-16148-1

N/A

0DataRank · unranked

31 citations

Mi Lin, Jing Xiong, Peter Orchard, Qi Yu, Lei Yu +6 more

Inverse directions of association of higher physical activity and higher insulin resistance with human skeletal muscle cell typae abundance and fiber-type-level gene expression

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.27.683567

Top 100%

0DataRank

Top 100%0 citations

Sarah C. Hanks, Arushi Varshney, Michael R. Erdos, Nandini Manickam, Heather M. Stringham +16 more

CNTools: A computational toolbox for cellular neighborhood analysis from multiplexed images

Research Square(2022)10.21203/rs.3.rs-2212129/v1

N/A

0DataRank · unranked

0 citations

Fan Feng, Xin Luo, Conrad Reihsmann, Alexander L. Hopkirk, Diane C. Saunders +4 more

Mutational Signatures of De-Differentiation in Functional Non-Coding Regions of Melanoma Genomes

UNC Libraries(2020)10.17615/c0g0-wj38

N/A

0DataRank · unranked

0 citations

Umesh Bhanot, Stephen C.J. Parker, Lingyun Song, Nancy F. Hansen, Terrence S. Furey +14 more

The methodological and ethical concerns of genetic studies of same-sex sexual behavior

The American Journal of Human Genetics(2024)10.1016/j.ajhg.2024.08.007

N/A

0DataRank · unranked

7 citations

Daphne Oluwaseun Martschenko, Robbee Wedow, Mete Civelek, James Tabery, Jedidiah Carlson +3 more

Untangling the genetics of beta cell dysfunction and death in type 1 diabetes

Molecular Metabolism(2024)10.1016/j.molmet.2024.101973

N/A

0DataRank · unranked

5 citations

Ruth M. Elgamal, Belle A. Henry-Kanarek, Peter Arvan, Shuibing Chen, Sangeeta Dhawan +7 more

Stephen C.J. Parker

Indexed papers

Top data-sharing exemplar

Papers