Henning Hermjakob

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

45.7Author DataRank

Indexed papers

28in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 28 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The minimum information about a genome sequence (MIGS) specification

Nature Biotechnology(2008)10.1038/nbt1360

Top 2%

7.9DataRank

Top 2%1164 citations

Tanya Gray, Norman Morrison, Jeremy Selengut, Peter Sterk, Tatiana Tatusova +89 more

Papers

Driven by 60 papers — median percentile 64. Top paper: “The minimum information about a genome sequence (MIGS) specification”.

The minimum information about a genome sequence (MIGS) specification

Nature Biotechnology(2008)10.1038/nbt1360

Top 2%

7.9DataRank

Top 2%1164 citations

Tanya Gray, Norman Morrison, Jeremy Selengut, Peter Sterk, Tatiana Tatusova +89 more

The reactome pathway knowledgebase 2022

Nucleic Acids Research(2021)10.1093/nar/gkab1028

Top 2%

7.9DataRank

Top 2%2570 citations

Bijay Jassal, Ralf Stephan, M Orlic-Milacic, Karen Rothfels, Andrea Senff‐Ribeiro +30 more

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

PLOS Biology(2017)10.1371/journal.pbio.2001414

N/A

6.5DataRank · unranked

148 citations

Nick Juty, Niklas Blomberg, Tony Burdett, Tom Conlin, Nathalie Conte +45 more

The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics

Nature Biotechnology(2007)10.1038/nbt1347

Top 3%

6.0DataRank

Top 3%106 citations

Michael Miller, Ruedi Aebersold, Rolf Apweiler, On behalf of the MGED Society, Ann-Christine Syvanen +24 more

The Reactome Pathway Knowledgebase 2024

Nucleic Acids Research(2023)10.1093/nar/gkad1025

Top 5%

4.5DataRank

Top 5%1383 citations

Deidre Beavers, Patrick Conley, Chuqiao Gong, Marc Gillespie, Johannes Griss +19 more

The IntAct database: efficient access to fine-grained molecular interaction data

Nucleic Acids Research(2021)10.1093/nar/gkab1006

Top 5%

4.3DataRank

Top 5%391 citations

Anjali Shrivastava, Eliot Ragueneau, Birgit H M Meldal, Colin Combe, Elisabet Barrera +24 more

The European Bioinformatics Institute (EMBL-EBI) in 2021

Nucleic Acids Research(2021)10.1093/nar/gkab1127

Top 6%

3.6DataRank

Top 6%98 citations

Alex Bateman, Cath Brooksbank, Anton I. Petrov, Rahuman S. Malik‐Sheriff, Michele Ide‐Smith +6 more

Complex Portal 2022: new curation frontiers

Nucleic Acids Research(2021)10.1093/nar/gkab991

Top 10%

2.2DataRank

Top 10%69 citations

Livia Perfetto, Colin Combe, Tiago Lubiana, João Vitor Ferreira Cavalcante, Hema Bye‐A‐Jee +14 more

Improvements in the protein identifier cross-reference service

Nucleic Acids Research(2012)10.1093/nar/gks338

N/A

2.0DataRank · unranked

30 citations

Richard G. Côté, Marine Dumousseau, Florian Reisinger, Henning Hermjakob, Juan A. Vizcaíno +1 more

Meeting Report from the Second “Minimum Information for Biological and Biomedical Investigations” (MIBBI) workshop

Standards in Genomic Sciences(2010)10.4056/sigs.147362

Top 11%

1.9DataRank

Top 11%32 citations

Dawn Field, Chris Taylor, Jan Aerts, Nigel Binns, Andrew Blake +27 more

Using the Reactome Database

Current Protocols(2023)10.1002/cpz1.722

Top 14%

1.4DataRank

Top 14%57 citations

M Orlic-Milacic, Lisa Matthews, Robin Haw, Cristoffer Sevilla, Marc Gillespie +20 more

Towards a unified open access dataset of molecular interactions

Nature Communications(2020)10.1038/s41467-020-19942-z

Top 15%

1.4DataRank

Top 15%82 citations

Elisabet Barrera, Alan Bridge, Noemí del‐Toro, Gianni Cesareni, Margaret Duesbury +22 more

Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work

Journal of Proteome Research(2023)10.1021/acs.jproteome.2c00637

N/A

1.3DataRank · unranked

59 citations

Juan Antonio Vizcaino, Andrew R. Jones, Pierre‐Alain Binz, Henry Lam, Joshua Klein +24 more

AI-readiness Criteria for Biomedical Data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.23.619844

N/A

1.2DataRank · unranked

24 citations

J. Harry Caufield, Jillian A. Parker, Mohammad Sadnan Al Manir, Edilberto Amorim, James A. Eddy +26 more

SPARQL-enabled identifier conversion with Identifiers.org

Bioinformatics(2015)10.1093/bioinformatics/btv064

N/A

1.1DataRank · unranked

14 citations

Jerven T. Bolleman, Nick Juty, Toshiaki Katayama, Michel J. Dumontier, Nicole Redaschi +4 more

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

Nature Biotechnology(2008)10.1038/nbt.1411

N/A

0.950DataRank · unranked

561 citations

Dawn Field, Jan Aerts, Rolf Apweiler, Michael Ashburner, On behalf of the MGED Society +63 more

Toward interoperable bioscience data

Nature Genetics(2012)10.1038/ng.1054

N/A

0.921DataRank · unranked

464 citations

Philippe Rocca-Serra, Dawn Field, Eamonn Maguire, Chris Taylor, Jessica I. Hoell +48 more

SBML Level 3: an extensible format for the exchange and reuse of biological models

Molecular Systems Biology(2020)10.15252/msb.20199110

N/A

0.861DataRank · unranked

311 citations

Dagmar Waltemath, Matthias König, Fengkai Zhang, Andreas Dräger, Claudine Chaouiya +95 more

Building an Ethical and Trustworthy Biomedical AI Ecosystem for the Translational and Clinical Integration of Foundation Models

Bioengineering(2024)10.3390/bioengineering11100984

N/A

0.718DataRank · unranked

20 citations

D. Gary Gilliland, Jack Rincon, Henning Hermjakob, Yu Yan, Irsyad Adam +7 more

Complex portal 2025: predicted human complexes and enhanced visualisation tools for the comparison of orthologous and paralogous complexes

Nucleic Acids Research(2024)10.1093/nar/gkae1085

Top 29%

0.699DataRank

Top 29%31 citations

Susie Huget, Juan Jose Medina Reyes, Eliot Ragueneau, Kalpana Panneerselvam, Samantha N Fischer +11 more

The Reactome Knowledgebase 2026

Nucleic Acids Research(2025)10.1093/nar/gkaf1223

Top 33%

0.590DataRank

Top 33%32 citations

Chuqiao Gong, Pierre Sinquin, Cristoffer Sevilla, Deidre Beavers, Alexander Grentner +20 more

π-HuB: the proteomic navigator of the human body

Nature(2024)10.1038/s41586-024-08280-5

N/A

0.581DataRank · unranked

47 citations

Ruedi Aebersold, Mark S. Baker, Xiu‐Wu Bian, Xiaochen Bo, Daniel W. Chan +95 more

Omics Discovery Index - Discovering and Linking Public ‘Omics’ Datasets

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/049205

Top 35%

0.563DataRank

Top 35%12 citations

Mingze Bai, Felipe da Veiga Leprevost, Silvano Squizzato, Young Mi Park, Kenneth Haug +25 more

hu.MAP3.0: atlas of human protein complexes by integration of >25,000 proteomic experiments

Molecular Systems Biology(2025)10.1038/s44320-025-00121-5

Top 36%

0.532DataRank

Top 36%16 citations

Erin R Claussen, Savvas Kourtis, Sara Sdelci, Sandra Orchard, Henning Hermjakob +3 more

ReactomeGSA: new features to simplify public data reuse

Bioinformatics(2024)10.1093/bioinformatics/btae338

Top 37%

0.528DataRank

Top 37%17 citations

Eliot Ragueneau, Chuqiao Gong, A. Prinz, S. Gansberger, Iñigo Oyarzun +3 more

Published and Perished? The Influence of the Searched Protein Database on the Long-Term Storage of Proteomics Data

Molecular & Cellular Proteomics(2011)10.1074/mcp.m111.008490

N/A

0.494DataRank · unranked

26 citations

Richard G. Côté, Christopher Gerner, Henning Hermjakob, Juan Antonio Vizcaíno, Johannes Griss

BioSimulators: a central registry of simulation engines and services for recommending specific tools

Nucleic Acids Research(2022)10.1093/nar/gkac331

N/A

0.489DataRank · unranked

25 citations

Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon +71 more

The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST)

Bioinformatics(2020)10.1093/bioinformatics/btaa622

N/A

0.477DataRank · unranked

23 citations

Steven Vercruysse, Márcio Luís Acencio, Ruth C. Lovering, Sandra Orchard, Glyn Bradley +21 more

Analysing the yeast complexome—the Complex Portal rising to the challenge

Nucleic Acids Research(2021)10.1093/nar/gkab077

Top 43%

0.434DataRank

Top 43%17 citations

Carles Pons, Livia Perfetto, Noemí del‐Toro, Edith D. Wong, Patrick Aloy +4 more

EBI Search: providing discovery tools for biological metadata in 2025

Nucleic Acids Research(2025)10.1093/nar/gkaf359

Top 43%

0.433DataRank

Top 43%9 citations

Prasad Basutkar, Renato Caminha Juaçaba Neto, Vijay Venkatesh Subramoniam, Kelsey Neis, Iva Tutis +2 more

ChatGPT usage in the Reactome curation process

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.08.566195

N/A

0.396DataRank · unranked

13 citations

Lisa Matthews, Bruce May, Veronica Shamovsky, M Orlic-Milacic, Karen Rothfels +9 more

The IMEx Coronavirus interactome: an evolving map of Coronaviridae-Host molecular interactions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.16.153817

N/A

0.391DataRank · unranked

7 citations

Chiara Pastrello, Noemí del‐Toro, Margaret Duesbury, Marta Iannuccelli, Max Kotlyar +15 more

Identifiers.org: Compact Identifier services in the cloud

Bioinformatics(2020)10.1093/bioinformatics/btaa864

N/A

0.360DataRank · unranked

10 citations

Javier Ferrer, Nick Juty, Carole Goble, Sarala Wimalaratne, Henning Hermjakob +1 more

The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST)

Preprints.org(2020)10.20944/preprints202004.0480.v1

N/A

0.330DataRank · unranked

8 citations

Steven Vercruysse, Márcio Luís Acencio, Ruth C. Lovering, Sandra Orchard, Glyn Bradley +20 more

Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness

Data Science Journal(2023)10.5334/dsj-2023-035

N/A

0.324DataRank · unranked

6 citations

Audrey S. Richard, Claire Connellan, Katharina B. Lauer, Maria Luisa Chiusano, Carole Goble +40 more

EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2025

Nucleic Acids Research(2025)10.1093/nar/gkaf1078

Top 54%

0.313DataRank

Top 54%5 citations

Nicolas Bosc, Cath Brooksbank, Christina Ernst, Mallory Freeberg, Kim T Gurwitz +18 more

The Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work

ChemRxiv(2022)10.26434/chemrxiv-2022-ksqg1

N/A

0.291DataRank · unranked

5 citations

Juan Antonio Vizcaino, Andrew R. Jones, Pierre‐Alain Binz, Henry Lam, Joshua Klein +24 more

The landscape of microRNA interaction annotation: analysis of three rare disorders as a case study

Database(2023)10.1093/database/baad066

Top 61%

0.241DataRank

Top 61%4 citations

Kalpana Panneerselvam, Pablo Porras, Margaret Duesbury, Livia Perfetto, Luana Licata +3 more

Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes

Database(2024)10.1093/database/baae031

N/A

0.241DataRank · unranked

4 citations

Karen Rothfels, Lisa Matthews, Adam Wright, Bijay Jassal, Veronica Shamovsky +17 more

Perspectives on tracking data reuse across biodata resources

Bioinformatics Advances(2024)10.1093/bioadv/vbae057

N/A

0.224DataRank · unranked

2 citations

Frederic Bastian, M.H. Buys, Charles E. Cook, Peter D’Eustachio, Melissa Harrison +94 more

Exploring Leishmania -Host Interaction with Reactome, a Database of Biological Pathways and Processes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.23.436718

N/A

0.122DataRank · unranked

1 citations

Bijay Jassal, Maria Adelaida Gómez, Henning Hermjakob, Julieth Murillo

Umbrella Data Management Plans to integrate FAIR data : lessons from the ISIDORe and BY-COVID consortia for pandemic preparedness

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.7517068

Top 78%

0.104DataRank

Top 78%1 citations

Audrey S. Richard, Claire Connellan, Katharina B. Lauer, Maria Luisa Chiusano, Carole Goble +40 more

Application of Large Language Models for Annotating Genes into Reactome Pathways

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.20.695723

N/A

0DataRank · unranked

1 citations

Lisa Matthews, Nathan Boyer, Marija Vuković Milačić, Deidre Beavers, Nancy T. Li +9 more

Verification and reproducible curation of the BioModels repository

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.16.633337

Top 100%

0DataRank

Top 100%0 citations

Rahuman S. Malik‐Sheriff, Tung V. N. Nguyen, Henning Hermjakob, Jonathan R Karr, Bilal Shaikh +12 more

Verification and reproducible curation of the BioModels repository

PLoS Computational Biology(2025)10.1371/journal.pcbi.1013239

Top 100%

0DataRank

Top 100%0 citations

Rahuman S. Malik‐Sheriff, Tung V. N. Nguyen, Henning Hermjakob, Jonathan R Karr, Bilal Shaikh +12 more

BY-COVID D3.2: Implementation of cloud-based, high performance, scalable indexing system.

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.7129553

N/A

0DataRank · unranked

0 citations

Mari Kleemola, Katja Moilanen, Markus Tuominen, Susanna‐Assunta Sansone, Allyson L. Lister +8 more

Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology

Briefings in Bioinformatics(2022)10.1093/bib/bbac212

N/A

0DataRank · unranked

30 citations

Dagmar Waltemath, James A. Glazier, Falk Schreiber, Sarah Keating, David P Nickerson +8 more

ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.16.044958

N/A

0DataRank · unranked

18 citations

Guilherme Viteri, Konstantinos Sidiropoulos, Vy Nguyen, Antonio Fabregat, Henning Hermjakob +1 more

Illuminate the Functions of Dark Proteins Using the Reactome‐IDG Web Portal

Current Protocols(2023)10.1002/cpz1.845

N/A

0DataRank · unranked

3 citations

Timothy Brunson, Nasim Sanati, Lisa Matthews, Robin Haw, Solomon I. Shorser +9 more

Illuminating Dark Proteins using Reactome Pathways

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.05.543335

N/A

0DataRank · unranked

6 citations

Nasim Sanati, Lisa Matthews, Robin Haw, Deidre Beavers, Solomon I. Shorser +9 more

The landscape of microRNA interactions annotation: analysis of three rare disorders as case study

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.20.545695

Top 100%

0DataRank

Top 100%0 citations

Kalpana Panneerselvam, Pablo Porras, Margaret Duesbury, Livia Perfetto, Luana Licata +3 more

Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.18.562964

Top 100%

0DataRank

Top 100%0 citations

Karen Rothfels, Lisa Matthews, Adam Wright, Bijay Jassal, Veronica Shamovsky +17 more

ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis

Molecular & Cellular Proteomics(2020)10.1074/mcp.tir120.002155

N/A

0DataRank · unranked

386 citations

Guilherme Viteri, Konstantinos Sidiropoulos, Vy Nguyen, Antonio Fabregat, Henning Hermjakob +1 more

MEMOTE for standardized genome-scale metabolic model testing

Nature Biotechnology(2020)10.1038/s41587-020-0446-y

N/A

0DataRank · unranked

558 citations

Moritz E. Beber, Brett G. Olivier, Frank T. Bergmann, Meriç Ataman, Parizad Babaei +64 more

BY-COVID D3.3.1: COVID-19 Data Portal

Research Portal (King's College London)(2023)10.5281/zenodo.8386828

Top 100%

0DataRank

Top 100%0 citations

Mari Kleemola, Marianna Ventouratou, Allyson L. Lister, Susanna‐Assunta Sansone, Romain David +7 more

Umbrella Data Management Plans to integrate FAIR data : lessons from the ISIDORe and BY-COVID consortia for pandemic preparedness

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.7998435

Top 100%

0DataRank

Top 100%0 citations

Audrey S. Richard, Claire Connellan, Katharina B. Lauer, Maria Luisa Chiusano, Carole Goble +40 more

Building an Ethical and Trustworthy Biomedical AI Ecosystem for the Translational and Clinical Integration of Foundational Models

arXiv (Cornell University)(2024)10.48550/arxiv.2408.01431

N/A

0DataRank · unranked

1 citations

D. Gary Gilliland, Jack Rincon, Henning Hermjakob, Yu Yan, Irsyad Adam +7 more

EFECT: A Method to Quantify the Reproducibility of Stochastic Simulations

arXiv (Cornell University)(2024)10.48550/arxiv.2406.16820

N/A

0DataRank · unranked

0 citations

Matthias König, Luís L. Fonseca, Pathirana, Dilan, Bergmann, Frank T., Grecco, Hernán E. +11 more

Umbrella Data Management Plans to integrate FAIR data : lessons from the ISIDORe and BY-COVID consortia for pandemic preparedness

Oxford University Research Archive (ORA) (University of Oxford)(2023)10.5281/zenodo.10022159

Top 100%

0DataRank

Top 100%0 citations

Audrey S. Richard, Claire Connellan, Katharina B. Lauer, Maria Luisa Chiusano, Carole Goble +40 more

Mining Alzheimer's Interactomes, Macromolecular Complexes and Pathways for Drug Discovery

PROTEOMICS(2025)10.1002/pmic.70018

N/A

0DataRank · unranked

1 citations

Krishna Kumar Tiwari, Luana Licata, Simona Panni, Sylvie Ricard‐Blum, Sucharitha Balu +8 more

Henning Hermjakob

Indexed papers

Top data-sharing exemplar

Papers