Birgit Schilling

ChemistryMedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.3Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Abundances of transcripts, proteins, and metabolites in the cell cycle of budding yeast reveal coordinate control of lipid metabolism

Molecular Biology of the Cell(2020)10.1091/mbc.e19-12-0708

Top 16%

1.3DataRank

Top 16%50 citations

Ophelia Papoulas, Nairita Maitra, Riddhiman K. Garge, Brian K. Kennedy, Birgit Schilling +3 more

Papers

Driven by 119 papers — median percentile 84. Top paper: “SenNet recommendations for detecting senescent cells in different tissues”.

SenNet recommendations for detecting senescent cells in different tissues

Nature Reviews Molecular Cell Biology(2024)10.1038/s41580-024-00738-8

N/A

4.6DataRank · unranked

356 citations

Adam D. Hudgins, Adarsh Rajesh, Alberto Pappalardo, Alla Y. Karpova, Amit Dey +74 more

Quantification of Lysine Acetylation and Succinylation Stoichiometry in Proteins Using Mass Spectrometric Data-Independent Acquisitions (SWATH)

Journal of the American Society for Mass Spectrometry(2016)10.1007/s13361-016-1476-z

N/A

2.7DataRank · unranked

80 citations

Alexandria K. D’Souza, Dylan J. Sorensen, Matthew J. Rardin, Alan J. Wolfe, Bradford W. Gibson +2 more

NIH SenNet Consortium to map senescent cells throughout the human lifespan to understand physiological health

Nature Aging(2022)10.1038/s43587-022-00326-5

N/A

2.1DataRank · unranked

128 citations

Patty J. Lee, Christopher C. Benz, Philip D. Blood, Katy Börner, Judith Campisi +93 more

Abundances of transcripts, proteins, and metabolites in the cell cycle of budding yeast reveal coordinate control of lipid metabolism

Molecular Biology of the Cell(2020)10.1091/mbc.e19-12-0708

Top 16%

1.3DataRank

Top 16%50 citations

Ophelia Papoulas, Nairita Maitra, Riddhiman K. Garge, Brian K. Kennedy, Birgit Schilling +3 more

A proteomic atlas of senescence-associated secretomes for aging biomarker development

PLoS Biology(2020)10.1371/journal.pbio.3000599

N/A

1.1DataRank · unranked

1251 citations

Abhijit Kale, Ok Hee Jeon, Chisaka Kuehnemann, Therese Payne, Chirag Rao +7 more

Translational control of one-carbon metabolism underpins ribosomal protein phenotypes in cell division and longevity

eLife(2020)10.7554/elife.53127

N/A

1.0DataRank · unranked

39 citations

Chong He, Heidi M. Blank, Mitsuhiro Tsuchiya, Birgit Schilling, Matt Kaeberlein +4 more

Skyline for Small Molecules: A Unifying Software Package for Quantitative Metabolomics

Journal of Proteome Research(2020)10.1021/acs.jproteome.9b00640

N/A

0.957DataRank · unranked

587 citations

Brian Pratt, Neelanjan Bose, Laura G. Dubois, Lisa St. John‐Williams, Kevin M. Perrott +11 more

Algorithmic assessment of cellular senescence in experimental and clinical specimens

Nature Protocols(2021)10.1038/s41596-021-00505-5

N/A

0.785DataRank · unranked

186 citations

Boshi Wang, Simone Brandenburg, Nathan Basisty, Konstantinos Evangelou, Marta Varela-Eirín +5 more

Challenges and recommendations for the translation of biomarkers of aging

Nature Aging(2024)10.1038/s43587-024-00683-3

N/A

0.686DataRank · unranked

96 citations

Ludger J.E. Goeminne, Jesse R. Poganik, Nir Barzilai, Daniel W. Belsky, Joe Betts-LaCroix +29 more

Senescent Schwann cells induced by aging and chronic denervation impair axonal regeneration following peripheral nerve injury

EMBO Molecular Medicine(2023)10.15252/emmm.202317907

N/A

0.626DataRank · unranked

64 citations

Cristian Gerónimo‐Olvera, Karina do Carmo de Vasconcelos Girardi, David Ñecuñir, Sandip Kumar Patel, Joanna Bons +9 more

OXR1 maintains the retromer to delay brain aging under dietary restriction

Nature Communications(2024)10.1038/s41467-023-44343-3

N/A

0.622DataRank · unranked

17 citations

Sudipta Bar, Eric B. Dammer, Enrique M. Carrera, Brian A. Hodge, Tyler Hilsabeck +19 more

Quantification of Site-specific Protein Lysine Acetylation and Succinylation Stoichiometry Using Data-independent Acquisition Mass Spectrometry

Journal of Visualized Experiments(2018)10.3791/57209

N/A

0.620DataRank · unranked

11 citations

Jesse G. Meyer, Birgit Schilling, Lei Wei

Quantitative Proteomic Analysis of the Senescence‐Associated Secretory Phenotype by Data‐Independent Acquisition

Current Protocols(2021)10.1002/cpz1.32

N/A

0.598DataRank · unranked

53 citations

Nathan Basisty, Pierre‐Yves Desprez, Judith Campisi, Birgit Schilling, Francesco Neri

Dietary restriction and the transcription factor clock delay eye aging to extend lifespan in Drosophila Melanogaster

Nature Communications(2022)10.1038/s41467-022-30975-4

N/A

0.546DataRank · unranked

37 citations

Geoffrey T. Meyerhof, Subhash D. Katewa, Ting Lian, Charles Lau, Sudipta Bar +8 more

Molecular and Cellular Crosstalk between Bone and Brain: Accessing Bidirectional Neural and Musculoskeletal Signaling during Aging and Disease

Journal of Bone Metabolism(2023)10.11005/jbm.2023.30.1.1

N/A

0.529DataRank · unranked

33 citations

Jordan B. Burton, Jacob Rose, Lisa Ellerby, Tamara Alliston, Birgit Schilling +1 more

Ketogenic diet administration later in life improves memory by modifying the synaptic cortical proteome via the PKA signaling pathway in aging mice

Cell Reports Medicine(2024)10.1016/j.xcrm.2024.101593

N/A

0.470DataRank · unranked

22 citations

Samah Shah, Cameron Wehrfritz, Mitsunori Nomura, Alejandro Acevedo, Cristina Olmos +14 more

Substrate stiffness dictates unique doxorubicin-induced senescence-associated secretory phenotypes and transcriptomic signatures in human pulmonary fibroblasts

GeroScience(2025)10.1007/s11357-025-01507-x

N/A

0.409DataRank · unranked

11 citations

Jacob Rose, Joanna Bons, Guo Li, Taylor R. Valentino, Fei Wu +13 more

Extracellular Nicotinamide Phosphoribosyltransferase Is a Component of the Senescence-Associated Secretory Phenotype

Frontiers in Endocrinology(2022)10.3389/fendo.2022.935106

N/A

0.396DataRank · unranked

13 citations

Kang‐Quan Hu, Kayla Butera, Sandip Kumar Patel, Joanna Bons, Birgit Schilling +3 more

Regulation of Chondrocyte Metabolism and Osteoarthritis Development by Sirt5 Through Protein Lysine Malonylation

Arthritis & Rheumatology(2025)10.1002/art.43164

N/A

0.396DataRank · unranked

13 citations

Anupama Binoy, Siqi Ren, T. Martino, Anna E. Miller, Craig R. G. Willis +7 more

Concerted changes in Epithelium and Stroma: a multi-scale, multi-omics analysis of progression from Barrett’s Esophagus to adenocarcinoma

Developmental Cell(2025)10.1016/j.devcel.2025.06.034

N/A

0.345DataRank · unranked

9 citations

David L. Gibbs, Philippe Gascard, Joanna Bons, John W. Hickey, Deng Pan +37 more

Extracellular Matrix Orchestration of Tissue Remodeling in the Chronically Inflamed Mouse Colon

Cellular and Molecular Gastroenterology and Hepatology(2024)10.1016/j.jcmgh.2024.01.003

N/A

0.330DataRank · unranked

8 citations

Joanna Bons, Giada Giavara, Filipe C. Lourenço, Deng Pan, Jordan B. Burton +7 more

Succinylation of Park7 activates a protective metabolic response to acute kidney injury

American Journal of Physiology-Renal Physiology(2024)10.1152/ajprenal.00062.2024

N/A

0.330DataRank · unranked

8 citations

Victoria Young, Brendon Frankel, Anne C. Silva Barbosa, Jordan B. Burton, Joanna Bons +7 more

Amyloid β accelerates age-related proteome-wide protein insolubility

GeroScience(2024)10.1007/s11357-024-01169-1

N/A

0.312DataRank · unranked

7 citations

Manish Chamoli, Dipa Bhaumik, Christina D. King, Xueshu Xie, Anna Foulger +4 more

Therapeutic targeting of HYPDH/PRODH2 with N-propargylglycine offers a Hyperoxaluria treatment opportunity

Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease(2023)10.1016/j.bbadis.2023.166848

N/A

0.312DataRank · unranked

7 citations

Ada Tadeo, Gary K. Scott, Fadzai Teramayi, John J. Tanner, Birgit Schilling +3 more

Deep Coverage and Quantification of the Bone Proteome Provides Enhanced Opportunities for New Discoveries in Skeletal Biology and Disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.20.517228

N/A

0.241DataRank · unranked

4 citations

Charles A. Schurman, Christina D. King, Joanna Bons, Jordan B. Burton, Sandip Kumar Patel +4 more

Comprehensive Profiling of Plasma Exosomes Using Data-Independent Acquisitions – New Tools for Aging Cohort Studies

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.27.433188

N/A

0.208DataRank · unranked

3 citations

Roland Bruderer, Nathan Basisty, Joanna Bons, Pierre‐Yves Desprez, Francesco Neri +4 more

Protocol for mass spectrometric profiling of lysine malonylation by lysine acetyltransferase in CRISPRi K562 cell lines

STAR Protocols(2024)10.1016/j.xpro.2024.103074

N/A

0.104DataRank · unranked

1 citations

Joanna Bons, Jacob Rose, Birgit Schilling, Eric Verdin, Ran Zhang

SIRT5 is a proviral factor that interacts with SARS-CoV-2 Nsp14 protein

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.04.474979

N/A

0DataRank · unranked

16 citations

Irene P. Chen, Albert Vallejo-Gracia, Ik-Jung Kim, Olga Bielska, Victor L. Lam +9 more

Ketone body metabolism declines with age in mice in a sex-dependent manner

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.05.511032

N/A

0DataRank · unranked

16 citations

Mitsunori Nomura, Oishika Panda, Thelma Y. Garcia, Christina D. King, Jacob Rose +5 more

Histone malonylation is regulated by SIRT5 and KAT2A

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.07.495150

N/A

0DataRank · unranked

6 citations

Joanna Bons, Olga Bielska, Chris Carrico, Jacob Rose, Indra Heckenbach +4 more

Data-Independent Acquisition and Quantification of Extracellular Matrix from Human Lung in Chronic Inflammation-Associated Carcinomas

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.05.503012

N/A

0DataRank · unranked

2 citations

Deng Pan, Samah Shah, Rosemary Bai, Chira Chen‐Tanyolac, Xianhong Wang +12 more

Regulation of urea cycle by reversible high stoichiometry lysine succinylation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.24.497535

N/A

0DataRank · unranked

1 citations

Xueshu Xie, Chris Carrico, Jesse G. Meyer, Lei Wei, Joanna Bons +11 more

NIH SenNet Consortium: Mapping Senescent Cells in the Human Body to Understand Health and Disease

Preprints.org(2022)10.20944/preprints202207.0160.v1

N/A

0DataRank · unranked

1 citations

Philip D. Blood, Katy Börner, Judith Campisi, Feng Chen, Heike E. Daldrup‐Link +38 more

Senescent Schwann cells induced by aging and chronic denervation impair axonal regeneration after peripheral nerve injury

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.07.519441

N/A

0DataRank · unranked

1 citations

Cristian Gerónimo‐Olvera, David Ñecuñir, Sandip Kumar Patel, Joanna Bons, Megan C. Wright +7 more

OXR1 maintains the retromer to delay brain aging under dietary restriction

Research Square(2022)10.21203/rs.3.rs-1455343/v1

N/A

0DataRank · unranked

0 citations

Kenneth A. Wilson, Sudipta Bar, Eric B. Dammer, Brian A. Hodge, Enrique M. Carrera +16 more

A natural variation-based screen in mouse cells reveals USF2 as a regulator of the DNA damage response and cellular senescence

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.21.489100

N/A

0DataRank · unranked

0 citations

Emily C. Moore, Emily E. K. Kopania, Christina D. King, Birgit Schilling, Judith Campisi +3 more

NIH SenNet Consortium: Mapping Senescent Cells in the Human Body to Understand Health and Disease

Preprints.org(2022)10.20944/preprints202207.0160.v2

N/A

0DataRank · unranked

0 citations

Philip D. Blood, Katy Börner, Judith Campisi, Feng Chen, Heike E. Daldrup‐Link +38 more

Proteomic Analysis of the Senescence-Associated Secretory Phenotype: GDF-15, IGFBP-2, and Cystatin-C Are Associated With Multiple Aging Traits

The Journals of Gerontology Series A(2023)10.1093/gerona/glad265

N/A

0DataRank · unranked

65 citations

Danielle Young, Toshiko Tanaka, Nathan Basisty, Stefania Bandinelli, Luigi Ferrucci +3 more

Senescent cells perturb intestinal stem cell differentiation through Ptk7 induced noncanonical Wnt and YAP signaling

Nature Communications(2023)10.1038/s41467-022-35487-9

N/A

0DataRank · unranked

64 citations

Simon Hansen, Otto Morris, David T. Madden, Clare Peters Libeu, Arjun J. Kumar +14 more

Ketohexokinase-C regulates global protein acetylation to decrease carnitine palmitoyltransferase 1a-mediated fatty acid oxidation

Journal of Hepatology(2023)10.1016/j.jhep.2023.02.010

N/A

0DataRank · unranked

57 citations

Sehyung Park, Hemendra J. Vekaria, Patrick G. Sullivan, Lindsey R. Conroy, Ramon C. Sun +10 more

The transcription regulator ATF4 is a mediator of skeletal muscle aging

GeroScience(2023)10.1007/s11357-023-00772-y

N/A

0DataRank · unranked

35 citations

George R. Marcotte, Nathan Basisty, Cameron Wehrfritz, Zachary C. Ryan, Matthew D. Strub +9 more

Histone malonylation is regulated by SIRT5 and KAT2A

iScience(2023)10.1016/j.isci.2023.106193

N/A

0DataRank · unranked

34 citations

Joanna Bons, Grace Scheidemantle, Xiaojing Liu, Olga Bielska, Chris Carrico +6 more

Proteomic quantification of native and ECM-enriched mouse ovaries reveals an age-dependent fibro-inflammatory signature

Aging(2023)10.18632/aging.205190

N/A

0DataRank · unranked

33 citations

Christina D. King, Jacob Rose, Joanna E. Burdette, Judith Campisi, Birgit Schilling +2 more

Cellular Senescence Exacerbates Features of Aging in the Eyes

PubMed(2023)10.59368/agingbio.20230014

N/A

0DataRank · unranked

12 citations

Judith Campisi, Kohsaku Numa, Sandip Kumar Patel, Christina D. King, Akifumi Matsumoto +4 more

Proteomic Analysis of Huntington’s Disease Medium Spiny Neurons Identifies Alterations in Lipid Droplets

Molecular & Cellular Proteomics(2023)10.1016/j.mcpro.2023.100534

N/A

0DataRank · unranked

35 citations

Carlos Galicia Aguirre, Joanna Bons, Akos A. Gerencser, Nathan Basisty, Sicheng Song +13 more

Fructose induced KHK-C can increase ER stress independent of its effect on lipogenesis to drive liver disease in diet-induced and genetic models of NAFLD

Metabolism(2023)10.1016/j.metabol.2023.155591

N/A

0DataRank · unranked

29 citations

Robert N. Helsley, Taghreed Fadhul, Jennifer L. S. Willoughby, Leila Noetzli, Ho-Chou Tu +18 more

Dicarboxylic Acid Dietary Supplementation Protects against AKI

Journal of the American Society of Nephrology(2023)10.1681/asn.0000000000000266

N/A

0DataRank · unranked

21 citations

Katherine Pfister, Takuto Chiba, Joanna Bons, Jacob Rose, Jordan B. Burton +12 more

Substantial downregulation of mitochondrial and peroxisomal proteins during acute kidney injury revealed by data‐independent acquisition proteomics

PROTEOMICS(2023)10.1002/pmic.202300162

N/A

0DataRank · unranked

19 citations

Anne C. Silva Barbosa, Joanna Bons, Jacob Rose, Katherine Pfister, Fabia Simona +8 more

Coenzyme A binding sites induce proximal acylation across protein families

Scientific Reports(2023)10.1038/s41598-023-31900-5

N/A

0DataRank · unranked

18 citations

Andrew Cruz, Marius Walter, Jesse G. Meyer, Cameron Wehrfritz, Samah Shah +4 more

Deep coverage and quantification of the bone proteome provides enhanced opportunities for new discoveries in skeletal biology and disease

PLoS ONE(2023)10.1371/journal.pone.0292268

N/A

0DataRank · unranked

17 citations

Charles A. Schurman, Christina D. King, Joanna Bons, Sandip Kumar Patel, Jordan B. Burton +4 more

A natural variation-based screen in mouse cells reveals USF2 as a regulator of the DNA damage response and cellular senescence

G3 Genes Genomes Genetics(2023)10.1093/g3journal/jkad091

N/A

0DataRank · unranked

10 citations

Emily C. Moore, Emily E. K. Kopania, Christina D. King, Birgit Schilling, Judith Campisi +3 more

Proteomic analysis of X-linked dystonia parkinsonism disease striatal neurons reveals altered RNA metabolism and splicing

Neurobiology of Disease(2023)10.1016/j.nbd.2023.106367

N/A

0DataRank · unranked

9 citations

Joanna Bons, Carlos Galicia Aguirre, Cristian Gerónimo‐Olvera, Samah Shah, Jacob Rose +7 more

Brain transcriptomic, metabolic and mitohormesis properties associated with N-propargylglycine treatment: A prevention strategy against neurodegeneration

Brain Research(2023)10.1016/j.brainres.2023.148733

N/A

0DataRank · unranked

4 citations

Joanna Bons, Madeleine Scott, Gary K. Scott, Ashley Loureiro, Alejandro Lopez‐Ramirez +4 more

Role of the Senescence-Associated Factor Dipeptidyl Peptidase 4 in the Pathogenesis of SARS-CoV-2 Infection

Aging and Disease(2023)10.14336/ad.2023.0812

N/A

0DataRank · unranked

10 citations

Sharvari Deshpande, Koji Kitazawa, Allison B. Herman, Joanna Bons, Jacob Rose +16 more

KIBRA repairs synaptic plasticity and promotes resilience to tauopathy-related memory loss

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.12.543777

N/A

0DataRank · unranked

4 citations

Kristeen A. Pareja‐Navarro, Lei Yao, Jackson H. Chen, Ivy Tsz-Lo Wong, Rowan Saloner +15 more

Substantial Downregulation of Mitochondrial and Peroxisomal Proteins during Acute Kidney Injury revealed by Data-Independent Acquisition Proteomics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.26.530107

N/A

0DataRank · unranked

3 citations

Anne C. Silva Barbosa, Joanna Bons, Jacob Rose, Katherine Pfister, Fabia Simona +8 more

Neuronal expression of human amyloid-β and Tau drives global phenotypic and multi-omic changes in C. elegans

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.01.542377

N/A

0DataRank · unranked

2 citations

Matías Fuentealba, Renuka Sivapatham, Christina D. King, Hadley Osman, Anna Foulger +6 more

Amyloid β accelerates age-related proteome-wide protein insolubility

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.13.548937

N/A

0DataRank · unranked

1 citations

Manish Chamoli, Dipa Bhaumik, Christina D. King, Xueshu Xie, Anna Foulger +4 more

Senescence and Inflammation: Summary of a Gerontological Society of America and National Institute on Aging-Sponsored Symposium

The Journals of Gerontology Series A(2023)10.1093/gerona/glad120

N/A

0DataRank · unranked

0 citations

Daniel J. Tyrrell, Tamara Alliston, Birgit Schilling, Matthew J. Yousefzadeh, Marissa Schafer +1 more

Dicarboxylic acid supplementation protects from acute kidney injury via stimulation of renal peroxisomal activity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.31.543068

N/A

0DataRank · unranked

0 citations

Katherine Pfister, Takuto Chiba, Joanna Bons, Jacob Rose, Jordan B. Burton +11 more

Ketogenic diet administration later in life improves memory and regulates the synaptic cortical proteome through the cAMP/PKA signaling pathway in aging mice

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.07.556691

N/A

0DataRank · unranked

0 citations

Samah Shah, Cameron Wehrfritz, Mitsunori Nomura, Alejandro Acevedo, Cristina Olmos +14 more

Neuronal Glycogen Breakdown Mitigates Tauopathy via Pentose Phosphate Pathway-Mediated Oxidative Stress Reduction

Research Square(2023)10.21203/rs.3.rs-3526342/v1

N/A

0DataRank · unranked

0 citations

Sudipta Bar, Kenneth A. Wilson, Tyler Hilsabeck, Sydney Alderfer, Eric B. Dammer +12 more

Aging impairs the osteocytic regulation of collagen integrity and bone quality

Bone Research(2024)10.1038/s41413-023-00303-7

N/A

0DataRank · unranked

31 citations

Serra Kaya, Neha S. Dole, Nadja M. Maldonado Luna, Natalia Castillo, Ryan Potter +10 more

KIBRA repairs synaptic plasticity and promotes resilience to tauopathy-related memory loss

Journal of Clinical Investigation(2024)10.1172/jci169064

N/A

0DataRank · unranked

26 citations

Kristeen A. Pareja‐Navarro, Lei Yao, Jackson H. Chen, Ivy Tsz-Lo Wong, Rowan Saloner +15 more

Dietary dicarboxylic acids provide a nonstorable alternative fat source that protects mice against obesity

Journal of Clinical Investigation(2024)10.1172/jci174186

N/A

0DataRank · unranked

26 citations

Bob B. Zhang, Yuxun Zhang, Sivakama S. Bharathi, Joanna Bons, Jacob Rose +14 more

Combined assembloid modeling and 3D whole-organ mapping captures the microanatomy and function of the human fallopian tube

Science Advances(2024)10.1126/sciadv.adp6285

N/A

0DataRank · unranked

25 citations

André Forjaz, Joanna Bons, Isha Bhorkar, Triya Roy, David Schell +14 more

TYROBP/DAP12 knockout in Huntington’s disease Q175 mice cell-autonomously decreases microglial expression of disease-associated genes and non-cell-autonomously mitigates astrogliosis and motor deterioration

Journal of Neuroinflammation(2024)10.1186/s12974-024-03052-4

N/A

0DataRank · unranked

21 citations

Jean‐Vianney Haure‐Mirande, Daniele Mattei, Joanna Bons, Angie V. Ramirez, B. Wade Hamilton +6 more

Regulation of urea cycle by reversible high-stoichiometry lysine succinylation

Nature Metabolism(2024)10.1038/s42255-024-01005-y

N/A

0DataRank · unranked

21 citations

Jingqi Fang, Xueshu Xie, Chris Carrico, Jesse G. Meyer, Lei Wei +13 more

Sirt2 Regulates Liver Metabolism in a Sex-Specific Manner

Biomolecules(2024)10.3390/biom14091160

N/A

0DataRank · unranked

10 citations

Sivakama S. Bharathi, Keaton J. Solo, Joanna Bons, Jacob Rose, Birgit Schilling +2 more

Senescent characteristics of human corneal endothelial cells upon ultraviolet-A exposure

Aging(2024)10.18632/aging.205761

N/A

0DataRank · unranked

6 citations

Sandip Kumar Patel, Zhixin A. Zhang, Jordan B. Burton, Akifumi Matsumoto, Jun‐Wei B. Hughes +6 more

Sirtuin-5 Is Recruited to Hepatic Peroxisomes in Mice Fed Dodecanedioic Acid but Has Little Impact on the Peroxisomal Succinylome

Biomolecules(2024)10.3390/biom14121508

N/A

0DataRank · unranked

2 citations

Bob B. Zhang, Sivakama S. Bharathi, Joanna Bons, Jacob Rose, Samah Shah +5 more

Sirt5 regulates chondrocyte metabolism and osteoarthritis development through protein lysine malonylation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.23.604872

N/A

0DataRank · unranked

3 citations

Anupama Binoy, Siqi Ren, T. Martino, Anna E. Miller, Craig R. G. Willis +8 more

Substrate Stiffness Dictates Unique Doxorubicin-induced Senescence-associated Secretory Phenotypes and Transcriptomic Signatures in Human Pulmonary Fibroblasts

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.18.623471

N/A

0DataRank · unranked

2 citations

Jacob Rose, Joanna Bons, Guo Li, Taylor R. Valentino, Fei Wu +13 more

Sirtuin‐5 Is Recruited to Hepatic Peroxisomes in Mice Fed Dodecanedioic Acid but Has Little Impact on the Peroxisomal Succinylome

Preprints.org(2024)10.20944/preprints202410.2196.v1

N/A

0DataRank · unranked

1 citations

Bob B. Zhang, Sivakama S. Bharathi, Joanna Bons, Jacob Rose, Samah Shah +5 more

Inhibition of the metalloprotease ADAM19 as a Novel Senomorphic Strategy to Ameliorate gut permeability and senescence markers by modulating senescence-associated secretory phenotype (SASP)

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.16.628718

N/A

0DataRank · unranked

0 citations

Tyler Hilsabeck, Blaine Pattavina, Jose Alberto Lopez Dominguez, Nathan Basisty, Joanna Bons +6 more

A Comprehensive Multiomics Signature of Doxorubicin‐Induced Cellular Senescence in the Postmenopausal Human Ovary

Aging Cell(2025)10.1111/acel.70111

N/A

0DataRank · unranked

9 citations

Mark A. Watson, Bikem Soygur, Fei Wu, Joanna Bons, Hannah Anvari +14 more

Amyloid-β-driven Alzheimer’s disease reshapes the colonic immune system in mice

Cell Reports(2025)10.1016/j.celrep.2025.116109

N/A

0DataRank · unranked

6 citations

Taylor R. Valentino, Max Manwaring-Mueller, Rohini Emani, Wei‐Chieh Mu, Carlos Galicia Aguirre +21 more

Neuronal glycogen breakdown mitigates tauopathy via pentose-phosphate-pathway-mediated oxidative stress reduction

Nature Metabolism(2025)10.1038/s42255-025-01314-w

N/A

0DataRank · unranked

9 citations

Kenneth A. Wilson, Tyler Hilsabeck, Sydney Alderfer, Eric B. Dammer, Jordan B. Burton +14 more

Loss of long-chain acyl-CoA dehydrogenase protects against acute kidney injury

JCI Insight(2025)10.1172/jci.insight.186073

N/A

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7 citations

Akira Oda, Yuxun Zhang, Katherine Pfister, Joanna Bons, Sivakama S. Bharathi +7 more

Exosomes released from senescent cells and circulatory exosomes isolated from human plasma reveal aging-associated proteomic and lipid signatures

Aging(2025)10.18632/aging.206292

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5 citations

Joanna Bons, Jacob Rose, Jessie R. Chappel, Rebecca L. Beres, Mark A. Watson +9 more

Senescent cell heterogeneity and responses to senolytic treatment are related to cell cycle status during senescence induction

Aging(2025)10.18632/aging.206299

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5 citations

Shuyuan Zheng, Mark A. Watson, Pierre-Yves Desprez, Akos A. Gerencser, Judith Campisi +4 more

Inhibition of the metalloprotease ADAM19 as a novel senomorphic strategy to ameliorate gut permeability and senescence markers by modulating senescence-associated secretory phenotype (SASP)

Aging(2025)10.18632/aging.206224

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0DataRank · unranked

1 citations

Tyler Hilsabeck, Blaine Pattavina, José A López-Domínguez, Nathan Basisty, Joanna Bons +6 more

Multiplexed Targeted Spatial Mass Spectrometry Imaging Assays to monitor lipids and NAD + metabolites in male CD38 knockout mice exhibiting improved metabolism

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.25.655991

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0DataRank · unranked

5 citations

Joanna Bons, Prasanna Vadhana Ashok Kumaar, Jingqi Fang, Andrea Roberts, Genesis Vega Hormazabal +5 more

Modifications to the gut microbiome alter bone matrix proteomics and fracture toughness at the cellular scale

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.21.689836

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0DataRank · unranked

1 citations

Chongshan Liu, J. Liu, Qi Tang, Sindu Stephen, Bo Wang +8 more

Odd-chain dicarboxylic acid feeding recapitulates the biochemical phenotype of glutaric aciduria type 1 in mice

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.13.637994

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0DataRank · unranked

0 citations

Yuxun Zhang, Sivakama S. Bharathi, Abigail Hernandez, Tetyana Dodatko, Joanna Bons +6 more

Intervertebral disc impairments in a mouse model of Alzheimer’s Disease

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.24.655931

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0DataRank · unranked

0 citations

Charles A. Schurman, Kenneth A. Wilson, Birgit Schilling, Lisa Ellerby, Simon Y. Tang +1 more

Acute Nicotinamide Adenine Dinucleotide Supplementation via Nicotinamide Mononucleotide Does Not Rescue Functional Impairment in a Lipopolysaccharide-induced Delirium Mouse Model

The Journals of Gerontology Series A(2025)10.1093/gerona/glaf116

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0DataRank · unranked

0 citations

Prasanna Vadhana Ashok Kumaar, Birgit Schilling, Eric Verdin, John C. Newman, M K Kirsten Chui

Multiplexed Targeted Spatial Mass Spectrometry Imaging Assays to monitor lipids and NAD+ metabolites in CD38 knockout mice exhibiting improved metabolism

Research Square(2025)10.21203/rs.3.rs-6743284/v1

N/A

0DataRank · unranked

0 citations

Charles A. Schurman, Joanna Bons, Prasanna Vadhana Ashok Kumaar, Jingji Fang, Andrea Roberts +5 more

Tau oligomers modulate synapse fate by eliciting progressive bipartite synapse dysregulation and synapse loss

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.19.677215

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0DataRank · unranked

0 citations

Christina D. King, Grant Kauwe, Yani Y. Ngwala, Doyle Lokitiyakul, Ivy Tsz-Lo Wong +8 more

Investigation of Neurons and Microglia from APOE3 Induced Pluripotent Stem Cells using Data-Independent Acquisitions on a ZenoTOF 7600

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.02.686128

N/A

0DataRank · unranked

0 citations

Tyne L.M. McHugh, Charles A. Schurman, Joanna Bons, María Álvarez Sánchez, Lisa Ellerby +2 more

Odd‐Chain Dicarboxylic Acid Feeding Produces a Glutaric Aciduria Type 1–Like Metabolic Signature in Mice

The FASEB Journal(2025)10.1096/fj.202502381r

N/A

0DataRank · unranked

0 citations

Yuxun Zhang, Sivakama S. Bharathi, Abigail Hernandez, Tetyana Dodatko, Joanna Bons +7 more

A multi-omics analysis of human fibroblasts overexpressing an Alu transposon reveals widespread disruptions in aging-associated pathways

GeroScience(2025)10.1007/s11357-025-02033-6

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0DataRank · unranked

0 citations

Eyael Tewelde, Christina D. King, Joanna Bons, Samah Shah, Jacob Rose +4 more

A Fully-Automated Senescence Test (FAST) for the high-throughput quantification of senescence-associated markers

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.22.573123

N/A

0DataRank · unranked

1 citations

Selma N. Takajjart, Chad A. Lerner, Pierre‐Yves Desprez, Birgit Schilling, Judith Campisi +2 more

Senescent cells promote tissue NAD+ decline during ageing via the activation of CD38+ macrophages

Nature Metabolism(2020)10.1038/s42255-020-00305-3

N/A

0DataRank · unranked

413 citations

Abhijit Kale, Rosalba Perrone, José A López-Domínguez, Angela Oliveira Pisco, Herbert G. Kasler +26 more

Plasma proteomic biomarker signature of age predicts health and life span

eLife(2020)10.7554/elife.61073

N/A

0DataRank · unranked

221 citations

Nathan Basisty, Giovanna Fantoni, Julián Candia, Ann Zenobia Moore, Angélique Biancotto +4 more

SUCLA2 mutations cause global protein succinylation contributing to the pathomechanism of a hereditary mitochondrial disease

Nature Communications(2020)10.1038/s41467-020-19743-4

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0DataRank · unranked

81 citations

Sanna Matilainen, Jesse G. Meyer, Pieti W. Pallijeff, J. Wall Richard, Christopher J. Carroll +21 more

The power of proteomics to monitor senescence-associated secretory phenotypes and beyond: toward clinical applications

Expert Review of Proteomics(2020)10.1080/14789450.2020.1766976

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0DataRank · unranked

72 citations

Abhijit Kale, Sandip Kumar Patel, Judith Campisi, Birgit Schilling, Nathan Basisty

Activating transcription factor 4 (ATF4) promotes skeletal muscle atrophy by forming a heterodimer with the transcriptional regulator C/EBPβ

Journal of Biological Chemistry(2020)10.1074/jbc.ra119.012095

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0DataRank · unranked

63 citations

Steven A. Bullard, Nathan Basisty, George R. Marcotte, Zachary P. Skopec, Jason M. Dierdorff +8 more

Cytotrophoblast extracellular vesicles enhance decidual cell secretion of immune modulators via TNF-alpha

Development(2020)10.1242/dev.187013

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0DataRank · unranked

19 citations

Sahar Houshdaran, Joshua F. Robinson, Matthew Gormley, Elaine Kwan, Mirhan Kapidzic +4 more

Simultaneous Affinity Enrichment of Two Post-Translational Modifications for Quantification and Site Localization

Journal of Visualized Experiments(2020)10.3791/60780

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0DataRank · unranked

9 citations

Samah Shah, Anja Holtz, Jacob Rose, Nathan Basisty, Birgit Schilling +1 more

Quantification of Insoluble Protein Aggregation in Caenorhabditis elegans during Aging with a Novel Data-Independent Acquisition Workflow

Journal of Visualized Experiments(2020)10.3791/61366

N/A

0DataRank · unranked

6 citations

Manish Chamoli, Dipa Bhaumik, Renuka Sivapatham, Suzanne Angeli, Julie K. Andersen +3 more

Simultaneous Affinity Enrichment of Two Post-Translational Modifications for Quantification and Site Localization

Journal of Visualized Experiments(2020)10.3791/60780-v

N/A

0DataRank · unranked

4 citations

Samah Shah, Anja Holtz, Jacob Rose, Nathan Basisty, Birgit Schilling +1 more

Improved SILAC quantification with data independent acquisition to investigate bortezomib-induced protein degradation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.23.394304

N/A

0DataRank · unranked

6 citations

Josue Baeza, Richard Lauman, Birgit Schilling, Benjamin A. García, Lindsay K. Pino

Translational control of methionine and serine metabolic pathways underpin the paralog-specific phenotypes of Rpl22 ribosomal protein mutants in cell division and replicative longevity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.05.935726

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0DataRank · unranked

3 citations

Chong He, Heidi M. Blank, Mitsuhiro Tsuchiya, Birgit Schilling, Matt Kaeberlein +4 more

Quantitative Method for Assessing the Role of Lysine & Arginine Post-Translational Modifications in Nonalcoholic Steatohepatitis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.17.910943

N/A

0DataRank · unranked

0 citations

Aleksandra Binek, Vidya Venkatraman, Brian C. Searle, Ronald J. Holewinski, George Rosenberger +11 more

JoVE Video Dataset

(2020)10.3791/61366-v

N/A

0DataRank · unranked

0 citations

Manish Chamoli, Dipa Bhaumik, Renuka Sivapatham, Suzanne Angeli, Julie K. Andersen +3 more

MicroRNA sequence codes for small extracellular vesicle release and cellular retention

Nature(2021)10.1038/s41586-021-04234-3

N/A

0DataRank · unranked

758 citations

Guoxiao Wang, Bruna B. Brandão, Tamires M. Zanotto, Samah Shah, Sandip Kumar Patel +3 more

Improved SILAC Quantification with Data-Independent Acquisition to Investigate Bortezomib-Induced Protein Degradation

Journal of Proteome Research(2021)10.1021/acs.jproteome.0c00938

N/A

0DataRank · unranked

70 citations

Josue Baeza, Richard Lauman, Birgit Schilling, Benjamin A. García, Lindsay K. Pino

Proteome plasticity in response to persistent environmental change

Molecular Cell(2021)10.1016/j.molcel.2021.06.028

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0DataRank · unranked

28 citations

Fan Zheng, Liying Li, Yanxiao Zhang, Catherine E. Chang, Jay R. Unruh +12 more

Quantification and Identification of Post-Translational Modifications Using Modern Proteomics Approaches

Methods in molecular biology(2021)10.1007/978-1-0716-1024-4_16

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0DataRank · unranked

27 citations

Nathan Basisty, Birgit Schilling, Anja Holtz

Proximity labeling and other novel mass spectrometric approaches for spatiotemporal protein dynamics

Expert Review of Proteomics(2021)10.1080/14789450.2021.1976149

N/A

0DataRank · unranked

10 citations

Birgit Schilling, Lindsay K. Pino

Dietary restriction and clock delay eye aging to extend lifespan in D. melanogaster

Research Square(2021)10.21203/rs.3.rs-428198/v1

N/A

0DataRank · unranked

1 citations

Geoffrey T. Meyerhof, Subhash D. Katewa, Ting Lian, Charles Lau, Sudipta Bar +8 more

Dietary restriction and clock delay eye aging to extend lifespan in D. melanogaster

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.08.443272

N/A

0DataRank · unranked

0 citations

Geoffrey T. Meyerhof, Subhash D. Katewa, Ting Lian, Charles Lau, Sudipta Bar +8 more

SIRT5 is a proviral factor that interacts with SARS-CoV-2 Nsp14 protein

PLoS Pathogens(2022)10.1371/journal.ppat.1010811

N/A

0DataRank · unranked

33 citations

Irene P. Chen, Albert Vallejo-Gracia, Ik-Jung Kim, Olga Bielska, Victor L. Lam +11 more

Data‐independent acquisition and quantification of extracellular matrix from human lung in chronic inflammation‐associated carcinomas

PROTEOMICS(2022)10.1002/pmic.202200021

N/A

0DataRank · unranked

18 citations

Deng Pan, Samah Shah, Rosemary Bai, Chira Chen‐Tanyolac, Xianhong Wang +13 more

In‐depth analysis of the Sirtuin 5‐regulated mouse brain malonylome and succinylome using library‐free data‐independent acquisitions

PROTEOMICS(2022)10.1002/pmic.202100371

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0DataRank · unranked

11 citations

Jacob Rose, Ran Zhang, Jordan B. Burton, Christopher Carrico, Eric Verdin +2 more

TurnoveR: A Skyline External Tool for Analysis of Protein Turnover in Metabolic Labeling Studies

Journal of Proteome Research(2022)10.1021/acs.jproteome.2c00173

N/A

0DataRank · unranked

8 citations

Nicholas Shulman, Cameron Wehrfritz, Alexandra N. Marsh, Samah Shah, Jacob Rose +9 more

Comprehensive proteomic quantification of bladder stone progression in a cystinuric mouse model using data-independent acquisitions

PLoS ONE(2022)10.1371/journal.pone.0250137

N/A

0DataRank · unranked

5 citations

Nathan Basisty, Tiffany Zee, Cameron Wehrfritz, Neelanjan Bose, Pierre‐Yves Desprez +4 more

A novel splice variant of Elp3/Kat9 regulates mitochondrial tRNA modification and function

Scientific Reports(2022)10.1038/s41598-022-18114-x

N/A

0DataRank · unranked

4 citations

Hyunsun Jo, Indra Heckenbach, Ritesh Tiwari, Herbert G. Kasler, Chad A. Lerner +7 more

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