J Stamatoyannopoulos

Altius Institute for Biomedical Sciences

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

60.1Author DataRank

Indexed papers

12in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 12 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Papers

Driven by 45 papers — median percentile 95. Top paper: “Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project”.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Integrative analysis of 111 reference human epigenomes

Nature(2015)10.1038/nature14248

Top 1%

10.0DataRank

Top 1%7189 citations

Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen +93 more

Global reference mapping of human transcription factor footprints

Nature(2020)10.1038/s41586-020-2528-x

N/A

8.3DataRank · unranked

450 citations

John Lazar, Richard Sandstrom, Jessica Halow, Kristen Lee, Daniel Bates +14 more

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

Nature(2010)10.1038/nature09725

Top 2%

8.1DataRank

Top 2%911 citations

Sebastian Will, Yuri B. Schwartz, Aki Minoda, Nicole C. Riddle, Jason Ernst +28 more

A comparative encyclopedia of DNA elements in the mouse genome

Nature(2014)10.1038/nature13992

Top 2%

7.9DataRank

Top 2%1946 citations

Yong Cheng, Alessandra Breschi, Jost Vielmetter, Weisheng Wu, Tyrone Ryba +150 more

Defining functional DNA elements in the human genome

Proceedings of the National Academy of Sciences(2014)10.1073/pnas.1318948111

Top 3%

6.9DataRank

Top 3%755 citations

Valentina Snetkova, Louis Philip Benoit Bouvrette, Anshul Kundaje, Georgi K. Marinov, Lucas D. Ward +29 more

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Quantitative Models of the Mechanisms That Control Genome-Wide Patterns of Transcription Factor Binding during Early Drosophila Development

PLoS Genetics(2011)10.1371/journal.pgen.1001290

N/A

5.8DataRank · unranked

170 citations

Xiao-Yong Li, Peter J. Sabo, Sean Thomas, John A. Stamatoyannopoulos, Mark D. Biggin +3 more

Transcriptomic signatures across human tissues identify functional rare genetic variation

Science(2020)10.1126/science.aaz5900

N/A

5.0DataRank · unranked

166 citations

Benjamin J. Strober, Jonah Einson, Nathan S. Abell, François Aguet, Alvaro N. Barbeira +183 more

Widely distributed noncoding purifying selection in the human genome

Proceedings of the National Academy of Sciences(2007)10.1073/pnas.0705140104

N/A

4.5DataRank · unranked

97 citations

William S. Noble, Charles E. Grant, Shamil R. Sunyaev, John A. Stamatoyannopoulos, William Stafford Noble +3 more

Personal and population genomics of human regulatory variation

Genome Research(2012)10.1101/gr.134890.111

N/A

4.5DataRank · unranked

112 citations

Andrew B. Stergachis, Matthew T. Maurano, Jost Vielmetter, Christopher M. Taylor, Robert E. Thurman +4 more

The missing link between genetic association and regulatory function

eLife(2022)10.7554/elife.74970

N/A

3.1DataRank · unranked

160 citations

Sumaiya Nazeen, Daniel Lee, Huwenbo Shi, J Stamatoyannopoulos, Sung Chun +4 more

A vast resource of allelic expression data spanning human tissues

Genome Biology(2020)10.1186/s13059-020-02122-z

Top 8%

2.7DataRank

Top 8%147 citations

François Aguet, Pejman Mohammadi, Kristin G. Ardlie, Anthony Philippakis, Leanne Haggerty +159 more

Genetic effects on gene expression across human tissues

UNC Libraries(2020)10.17615/p82n-gb73

Top 8%

2.6DataRank

Top 8%63 citations

Yuan He, Lin Chen, Emmanouil T. Dermitzakis, Philip A. Branton, Andrew B. Nobel +95 more

52 Genetic Loci Influencing Myocardial Mass

Journal of the American College of Cardiology(2016)10.1016/j.jacc.2016.07.729

N/A

2.4DataRank · unranked

135 citations

Jessica van Setten, Niek Verweij, Georg Vogler, Matthew T. Maurano, Xinchen Wang +172 more

An encyclopedia of enhancer-gene regulatory interactions in the human genome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.09.563812

Top 11%

1.9DataRank

Top 11%120 citations

Kristy S. Mualim, Alireza Karbalayghareh, Maya U. Sheth, Kushal K. Dey, Evelyn Jagoda +41 more

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Genome Research(2012)10.1101/gr.136184.111

N/A

1.2DataRank · unranked

2212 citations

Georgi K. Marinov, Anshul Kundaje, Yanxiao Zhang, Florencia Pauli, Serafim Batzoglou +46 more

Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

Genome biology(2022)10.1186/s13059-021-02560-3

N/A

1.1DataRank · unranked

56 citations

Eric Haugen, Alex Reynolds, Andrew E. Teschendorff, Jenny van Dongen, Qing Lan +8 more

An expansive human regulatory lexicon encoded in transcription factor footprints

Nature(2012)10.1038/nature11212

N/A

1.0DataRank · unranked

802 citations

Jost Vielmetter, Andrew B. Stergachis, Alex P. Reynolds, Eric Haugen, Benjamin Vernot +36 more

Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

Nature Methods(2009)10.1038/nmeth.1313

N/A

0.956DataRank · unranked

584 citations

Xiaoyu Chen, Zhihong Zhang, Peter J. Sabo, Richard Sandstrom, Alex P. Reynolds +10 more

RFECS: A Random-Forest Based Algorithm for Enhancer Identification from Chromatin State

PLoS Computational Biology(2013)10.1371/journal.pcbi.1002968

N/A

0.826DataRank · unranked

245 citations

Wei Xie, Yan Li, Uli Wagner, Wei Wang, Momoe Kato +5 more

The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding

Genome Biology(2011)10.1186/gb-2011-12-4-r34

N/A

0.823DataRank · unranked

240 citations

Sean Thomas, Peter J. Sabo, Michael B. Eisen, John A. Stamatoyannopoulos, Mark D. Biggin +2 more

Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease

Cell(2021)10.1016/j.cell.2021.03.050

N/A

0.804DataRank · unranked

212 citations

Daniel C. Nachun, Nicole M. Ferraro, Michael J. Gloudemans, Abhiram S. Rao, Craig Smail +168 more

Genome-Wide Association Study Points to Novel Locus for Gilles de la Tourette Syndrome

Biological Psychiatry(2023)10.1016/j.biopsych.2023.01.023

N/A

0.520DataRank · unranked

31 citations

Apostolia Topaloudi, Pritesh Jain, Zhiyu Yang, Dongmei Yu, Petros Kolovos +94 more

A genome scale transcriptional regulatory model of the human placenta

Science Advances(2024)10.1126/sciadv.adf3411

Top 39%

0.489DataRank

Top 39%18 citations

Kylia Ahuna, Yeon Mi Hwang, Jocelynn R. Pearl, Hanna Liao, Paul Shannon +21 more

FORGEdb: a tool for identifying candidate functional variants and uncovering target genes and mechanisms for complex diseases

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.14.516365

N/A

0.485DataRank · unranked

9 citations

Eric Haugen, María Gutiérrez‐Arcelus, Xiaozheng Yao, Andrew E. Teschendorff, Stephan Beck +6 more

Leveraging pleiotropy to discover and interpret GWAS results for sleep-associated traits

PLoS Genetics(2022)10.1371/journal.pgen.1010557

N/A

0.434DataRank · unranked

17 citations

Sebastian Akle, Athanasios Teodosiadis, Brian E. Cade, Heming Wang, Tamar Sofer +13 more

Atlas and developmental dynamics of mouse DNase I hypersensitive sites

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.26.172718

N/A

0.360DataRank · unranked

10 citations

John Lazar, Tim R. Mercer, Jessica Halow, Ida M. Washington, Kristen Lee +16 more

Quantitative dialing of gene expression via precision targeting of KRAB repressor

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.19.956730

N/A

0.292DataRank · unranked

6 citations

Christie Ciarlo, Jocelynn R. Pearl, Elaine Schanzer, Hanna Liao, Benjamin Van Biber +17 more

A Genome Scale Transcriptional Regulatory Model of the Human Placenta

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.27.509541

Top 70%

0.165DataRank

Top 70%2 citations

Kylia Ahuna, Yeon Mi Hwang, Jocelynn R. Pearl, Hanna Liao, Paul Shannon +21 more

Large-scale discovery of potent, compact and erythroid specific enhancers for gene therapy vectors

Nature Communications(2025)10.1038/s41467-025-59235-x

N/A

0DataRank · unranked

4 citations

Pavel Sova, Grigorios Georgolopoulos, Kiriaki Paschoudi, Mineo Iwata, Jordan Bloom +11 more

De novo design of protein logic gates

Science(2020)10.1126/science.aay2790

N/A

0DataRank · unranked

225 citations

Ryan D. Kibler, Andrew C. Hunt, Florian Büsch, Jocelynn R. Pearl, Mengxuan Jia +14 more

Contributors

Genomic and Personalized Medicine(2013)10.1016/b978-0-12-382227-7.00124-5

N/A

0DataRank · unranked

0 citations

Minhaz Uddin Ahmed, Sun Hee Ahn, R. Rand Allingham, Jude Alsarraj, Matthew L. Anderson +228 more

Global Regulatory DNA Potentiation by SMARCA4 Propagates to Selective Gene Expression Programs via Domain-Level Remodeling

Cell Reports(2020)10.1016/j.celrep.2020.107676

N/A

0DataRank · unranked

17 citations

Sandra Stehling-Sun, Vivek Nandakumar, Hao Wang, Daniel R. Chee, Nicholas P. Howard +17 more

Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions

UNC Libraries(2020)10.17615/12mf-6858

N/A

0DataRank · unranked

4 citations

R. E. Thurman, G. E. Crawford, Liyan Song, B. Lenhard, Nathan C. Sheffield +3 more

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

UNC Libraries(2020)10.17615/d7n3-p041

Top 100%

0DataRank

Top 100%0 citations

Christopher M. Taylor, Saurabh Asthana, J Stamatoyannopoulos, Michael P. Snyder, Ewan Birney +26 more

Tissue context determines the penetrance of regulatory DNA variation

Nature Communications(2021)10.1038/s41467-021-23139-3

N/A

0DataRank · unranked

18 citations

Rachel Byron, Megan S. Hogan, Raquel Ordóñez, Mark Groudine, M. A. Bender +3 more

Inaccessible LCG Promoters Act as Safeguards to Restrict T Cell Development to Appropriate Notch Signaling Environments

Stem Cell Reports(2021)10.1016/j.stemcr.2021.02.017

N/A

0DataRank · unranked

1 citations

Qian Wu, Barbara Varnum‐Finney, Richard Sandstrom, Wouter Meuleman, J Stamatoyannopoulos +2 more

The missing link between genetic association and regulatory function

medRxiv(2021)10.1101/2021.06.08.21258515

N/A

0DataRank · unranked

19 citations

Sumaiya Nazeen, Daniel Lee, Huwenbo Shi, J Stamatoyannopoulos, Sung Chun +4 more

The diverse genetic origins of a Classical period Greek army

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2205272119

N/A

0DataRank · unranked

88 citations

Alissa Mittnik, Britney Kyle, Giulio Catalano, Pier Francesco Fabbri, Adam C. S. Kazmi +45 more

Associations Between Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants and Risk of Coronavirus Disease 2019 (COVID-19) Hospitalization Among Confirmed Cases in Washington State: A Retrospective Cohort Study

Clinical Infectious Diseases(2022)10.1093/cid/ciac279

N/A

0DataRank · unranked

80 citations

Stephanie M. Lunn, Michael Famulare, Lauren Frisbie, Ian Painter, Roy Burstein +40 more

Large-scale discovery of potent, compact and lineage specific enhancers for gene therapy vectors

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.04.559165

N/A

0DataRank · unranked

1 citations

Pavel Sova, Grigorios Georgolopoulos, Kiriaki Paschoudi, Mineo Iwata, Jordan Bloom +11 more

FORGEdb: a tool for identifying candidate functional variants and uncovering target genes and mechanisms for complex diseases

Genome biology(2024)10.1186/s13059-023-03126-1

N/A

0DataRank · unranked

39 citations

Eric Haugen, María Gutiérrez‐Arcelus, Xiaozheng Yao, Andrew E. Teschendorff, Stephan Beck +6 more

Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

UNC Libraries(2024)10.17615/grnx-4j28

N/A

0DataRank · unranked

0 citations

Qing Lan, Andrew E. Teschendorff, J Stamatoyannopoulos, Ian Dunham, Guillaume Bourque +8 more

FORGEdb: a tool for identifying candidate functional variants and uncovering target genes and mechanisms for complex diseases

UNC Libraries(2024)10.17615/04jh-5e50

N/A

0DataRank · unranked

0 citations

Andrew E. Teschendorff, Ian Dunham, Nora Franceschini, Sonja I. Berndt, Eric Haugen +6 more

J Stamatoyannopoulos

Indexed papers

Top data-sharing exemplar

Papers