Zhiping Weng

Also affiliated with University of Massachusetts Chan Medical School, UMass Memorial Medical Center

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

51.2Author DataRank

Indexed papers

18in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 18 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Papers

Driven by 82 papers — median percentile 86. Top paper: “Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project”.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Modeling gene expression using chromatin features in various cellular contexts

Genome Biology(2012)10.1186/gb-2012-13-9-r53

Top 3%

6.9DataRank

Top 3%299 citations

Melissa C Greven, Anshul Kundaje, Sarah Djebali, James B Brown, Chao Cheng +6 more

Defining functional DNA elements in the human genome

Proceedings of the National Academy of Sciences(2014)10.1073/pnas.1318948111

Top 3%

6.9DataRank

Top 3%755 citations

Valentina Snetkova, Louis Philip Benoit Bouvrette, Anshul Kundaje, Georgi K. Marinov, Lucas D. Ward +29 more

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole-genome sequencing studies at scale

Nature Genetics(2020)10.1038/s41588-020-0676-4

N/A

5.3DataRank · unranked

295 citations

Zilin Li, Hufeng Zhou, Sheila M. Gaynor, Yaowu Liu, Han Chen +88 more

Genome-wide identification and characterization of replication origins by deep sequencing

Genome Biology(2012)10.1186/gb-2012-13-4-r27

N/A

3.9DataRank · unranked

100 citations

Yoshimi Yanagisawa, Alexander M. Tsankov, Christopher Hart, Keita Aoki, Naveen Kommajosyula +13 more

Ancestry-inclusive dog genomics challenges popular breed stereotypes

Science(2022)10.1126/science.abk0639

N/A

3.8DataRank · unranked

197 citations

Jessica P. Hekman, Xue Li, Jesse McClure, Brittney Logan, Linda Goodman +20 more

A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods

Genome biology(2020)10.1186/s13059-019-1924-8

Top 6%

3.7DataRank

Top 6%128 citations

Henry Pratt, Michael J. Purcaro, Zhiping Weng, Jill E. Moore

YAP and TAZ are transcriptional co-activators of AP-1 proteins and STAT3 during breast cellular transformation

eLife(2021)10.7554/elife.67312

N/A

3.2DataRank · unranked

134 citations

Henry Pratt, Mingshi Gao, Fengxiang Wei, Zhiping Weng, Kevin Struhl +1 more

Evolutionary constraint and innovation across hundreds of placental mammals

Science(2023)10.1126/science.abn3943

Top 7%

3.0DataRank

Top 7%271 citations

Irene M. Kaplow, Diane P. Genereux, Michael X. Dong, Graham M. Hughes, Xue Li +78 more

FAVOR: functional annotation of variants online resource and annotator for variation across the human genome

Nucleic Acids Research(2022)10.1093/nar/gkac966

Top 8%

2.7DataRank

Top 8%143 citations

Theodore Arapoglou, Xihao Li, Zilin Li, Xiuwen Zheng, Jill E. Moore +20 more

An encyclopedia of enhancer-gene regulatory interactions in the human genome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.09.563812

Top 11%

1.9DataRank

Top 11%120 citations

Kristy S. Mualim, Alireza Karbalayghareh, Maya U. Sheth, Kushal K. Dey, Evelyn Jagoda +41 more

Single-cell genomics and regulatory networks for 388 human brains

Science(2024)10.1126/science.adi5199

Top 12%

1.7DataRank

Top 12%155 citations

Jason Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Chirag Gupta +91 more

The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models

Cell(2023)10.1016/j.cell.2023.02.018

Top 15%

1.4DataRank

Top 15%82 citations

Jiahao Gao, Beatrice Borsari, Yucheng T. Yang, Timur R. Galeev, Gamze Gürsoy +95 more

Single-cell multi-cohort dissection of the schizophrenia transcriptome

Science(2024)10.1126/science.adg5136

N/A

1.3DataRank · unranked

125 citations

Shahin Mohammadi, José Dávila-Velderrain, Sivan Subburaju, Daniel Reed Tso, Makayla Hourihan +196 more

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

Nature Genetics(2007)10.1038/ng1966

N/A

1.2DataRank · unranked

3453 citations

Rhona K Stuart, Gary Hon, Yutao Fu, Christina W Ching, R. David Hawkins +10 more

Massively parallel characterization of regulatory elements in the developing human cortex

Science(2024)10.1126/science.adh0559

N/A

1.2DataRank · unranked

61 citations

Sean Whalen, Marilyn Steyert, Ryan Ziffra, Pawel F. Przytycki, Fumitaka Inoue +197 more

Factorbook: an updated catalog of transcription factor motifs and candidate regulatory motif sites

Nucleic Acids Research(2021)10.1093/nar/gkab1039

Top 19%

1.1DataRank

Top 19%47 citations

Gregory Andrews, Nishigandha Phalke, Jack Huey, Michael J. Purcaro, Arjan van der Velde +3 more

Unsupervised pattern discovery in human chromatin structure through genomic segmentation

Nature Methods(2012)10.1038/nmeth.1937

N/A

0.972DataRank · unranked

651 citations

Orion J. Buske, Jie Wang, Zhiping Weng, Jeff A Bilmes, William Stafford Noble +2 more

The PsychENCODE project

Nature Neuroscience(2015)10.1038/nn.4156

N/A

0.927DataRank · unranked

483 citations

Chunyu Liu, James A. Knowles, Flora M. Vaccarino, Philip L. De Jager, Gregory E. Crawford +87 more

The Insulator Binding Protein CTCF Positions 20 Nucleosomes around Its Binding Sites across the Human Genome

PLoS Genetics(2008)10.1371/journal.pgen.1000138

N/A

0.902DataRank · unranked

408 citations

Manisha Sinha, Craig L. Peterson, Zhiping Weng, Yutao Fu

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

Genome Research(2012)10.1101/gr.136838.111

N/A

0.779DataRank · unranked

179 citations

Roger Alexander, Renqiang Min, Jing Leng, Kevin Y. Yip, Joel Rozowsky +17 more

Cross-ancestry atlas of gene, isoform, and splicing regulation in the developing human brain

Science(2024)10.1126/science.adh0829

Top 26%

0.765DataRank

Top 26%50 citations

Michael Margolis, Rujia Dai, Pan Zhang, Pawel F. Przytycki, Daniel Vo +95 more

Integration of high-resolution promoter profiling assays reveals novel, cell type–specific transcription start sites across 115 human cell and tissue types

Genome Research(2021)10.1101/gr.275723.121

Top 30%

0.670DataRank

Top 30%15 citations

Xiao‐Ou Zhang, Shaimae I. Elhajjajy, Kaili Fan, Henry Pratt, Fairlie Reese +3 more

Deep sequencing of yeast and mouse tRNAs and tRNA fragments using OTTR

eLife(2025)10.7554/elife.77616

N/A

0.429DataRank · unranked

11 citations

Lucas Ferguson, Carolina Galan, Tianxiong Yu, Heather E. Upton, Ebru Kaymak +4 more

Single-cell genomics and regulatory networks for 388 human brains

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.18.585576

Top 44%

0.419DataRank

Top 44%9 citations

Jason J. Liu, Declan Clarke, Matthew L. Jensen, Jonathan Warrell, Chirag Gupta +75 more

An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional Regulation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.26.629296

Top 45%

0.416DataRank

Top 45%12 citations

Henry Pratt, Kaili Fan, Nishigandha Phalke, Jonathan Fisher, Shaimae I. Elhajjajy +37 more

Factorbook: an Updated Catalog of Transcription Factor Motifs and Candidate Regulatory Motif Sites

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.11.463518

Top 66%

0.178DataRank

Top 66%2 citations

Gregory Andrews, Nishigandha Phalke, Michael J. Purcaro, Arjan van der Velde, Jill E. Moore +2 more

FAVOR 2.0: A reengineered functional annotation of variants online resource for interpreting genomic variation

Nucleic Acids Research(2025)10.1093/nar/gkaf1217

Top 72%

0.115DataRank

Top 72%1 citations

Vineet Verma, Xihao Li, Zilin Li, Nicole Shedd, Thomas Cheng Li +12 more

Ex Vivo Culture Models of Hidradenitis Suppurativa for Defining Molecular Pathogenesis and Treatment Efficacy of Novel Drugs

Research Square(2021)10.21203/rs.3.rs-1075860/v1

N/A

0DataRank · unranked

1 citations

Mahendra Kashyap, Jasim Khan, Rajesh Sinha, Zhiping Weng, Allen S. W. Oak +9 more

Dysregulated Protein Translation Control in Hidradenitis Suppurativa: Implication for Lesion-associated Squamous Cell Carcinoma Development

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.14.464300

N/A

0DataRank · unranked

1 citations

Mahendra Kashyap, Yunjia Chen, Yuanyuan Guo, Jasim Khan, Jari Q. Chen +10 more

Somatic piRNAs and Transposons are Differentially Regulated During Skeletal Muscle Atrophy and Programmed Cell Death

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.02.433533

N/A

0DataRank · unranked

0 citations

Travis Thomson, Christine Brown, Subhanita Ghosh, William E. Theurkauf, Zhiping Weng +2 more

A-MYB/TCFL5 regulatory architecture ensures the production of pachytene piRNAs in placental mammals

RNA(2022)10.1261/rna.079472.122

N/A

0DataRank · unranked

27 citations

Adriano Biasini, Katharine Cecchini, Martin Säflund, Haiwei Mou, Amena Arif +6 more

The transcription factor TCFL5 responds to A-MYB to elaborate the male meiotic program in mice

Reproduction(2022)10.1530/rep-22-0355

N/A

0DataRank · unranked

25 citations

Adriano Biasini, Tianxiong Yu, Martin Säflund, Haiwei Mou, Amena Arif +8 more

GLH/VASA helicases promote germ granule formation to ensure the fidelity of piRNA-mediated transcriptome surveillance

Nature Communications(2022)10.1038/s41467-022-32880-2

N/A

0DataRank · unranked

23 citations

Jordan Brown, Tao He, Wei-Sheng Wu, Shikui Tu, Zhiping Weng +3 more

Ex Vivo Culture Models of Hidradenitis Suppurativa for Defining Molecular Pathogenesis and Treatment Efficacy of Novel Drugs

Inflammation(2022)10.1007/s10753-022-01629-w

N/A

0DataRank · unranked

9 citations

Mahendra Kashyap, Jasim Khan, Rajesh Sinha, Zhiping Weng, Allen S. W. Oak +9 more

Building integrative functional maps of gene regulation

Human Molecular Genetics(2022)10.1093/hmg/ddac195

N/A

0DataRank · unranked

6 citations

Henry Pratt, Jill E. Moore, Mark Gerstein, Zhiping Weng, Jinrui Xu

Flnc: Machine Learning Improves the Identification of Novel Long Noncoding RNAs from Stand-Alone RNA-Seq Data

Non-Coding RNA(2022)10.3390/ncrna8050070

N/A

0DataRank · unranked

4 citations

Peng Zhou, Euijin Kwon, Katherine A. Fitzgerald, Zhiping Weng, Chan Zhou +1 more

MafB, WDR77, and ß-catenin interact with each other and have similar genome association profiles

PLoS ONE(2022)10.1371/journal.pone.0264799

N/A

0DataRank · unranked

3 citations

Mingshi Gao, Henry Pratt, Zhiping Weng, Kevin Struhl, Lizhi He

Deep sequencing of yeast and mouse tRNAs and tRNA fragments using OTTR

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.04.479139

N/A

0DataRank · unranked

19 citations

Carolina Galan, Tianxiong Yu, Heather E. Upton, Lucas Ferguson, Ebru Kaymak +4 more

GLH/VASA helicases promote germ granule formation to ensure the fidelity of piRNA-mediated transcriptome surveillance

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.21.477267

N/A

0DataRank · unranked

2 citations

Jordan Brown, Tao He, Wei-Sheng Wu, Shikui Tu, Zhiping Weng +3 more

Flnc: Machine Learning Improves the Identification of Novel Full-length Long Noncoding RNAs from RNA Sequencing Data Without Transcriptional Initiation Profiles

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.02.502545

N/A

0DataRank · unranked

1 citations

Peng Zhou, Euijin Kwon, Katherine A. Fitzgerald, Zhiping Weng, Chan Zhou +1 more

MafB, WDR77, and ß-catenin interact with each other and have similar genome association profiles

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.17.480948

N/A

0DataRank · unranked

0 citations

Mingshi Gao, Henry Pratt, Zhiping Weng, Kevin Struhl, Lizhi He

Leveraging base-pair mammalian constraint to understand genetic variation and human disease

Science(2023)10.1126/science.abn2937

N/A

0DataRank · unranked

121 citations

Jennifer R. S. Meadows, Steven Gazal, BaDoi N. Phan, Xue Li, Diane P. Genereux +70 more

Downregulation of Hsp90 and the antimicrobial peptide Mtk suppresses poly(GR)-induced neurotoxicity in C9ORF72-ALS/FTD

Neuron(2023)10.1016/j.neuron.2023.02.029

N/A

0DataRank · unranked

27 citations

Yong‐Woo Jun, Gabriel Linares, Brandon Butler, Yeliz Yuva-Adyemir, Jill E. Moore +9 more

Epigenetic and chromosomal features drive transposon insertion inDrosophila melanogaster

Nucleic Acids Research(2023)10.1093/nar/gkad054

N/A

0DataRank · unranked

25 citations

Tianxiong Yu, Bo Xu, Zhongren Hu, Xiao‐Ou Zhang, William E. Theurkauf +2 more

Beyond genome-wide association studies: Investigating the role of noncoding regulatory elements in primary sclerosing cholangitis

Hepatology Communications(2023)10.1097/hc9.0000000000000242

N/A

0DataRank · unranked

6 citations

Tong Wu, Shaimae Elhajjajy, Jeffrey Zhou, Kate Fitzgerald, Tom Fazzio +3 more

Mechanism underlying follicular hyperproliferation and oncogenesis in hidradenitis suppurativa

iScience(2023)10.1016/j.isci.2023.106896

N/A

0DataRank · unranked

5 citations

Mahendra Kashyap, Yunjia Chen, Jasim Khan, Yuanyuan Guo, Jari Q. Chen +15 more

Single-cell transcriptomic and genomic changes in the aging human brain

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.07.566050

N/A

0DataRank · unranked

10 citations

Tianxiong Yu, Jennifer S. Ziegenfuss, Allie K. Tolles, Yerin Kim, Zhiping Weng +2 more

FAVOR-GPT: a generative natural language interface to whole genome variant functional annotations

Bioinformatics Advances(2024)10.1093/bioadv/vbae143

N/A

0DataRank · unranked

9 citations

Hufeng Zhou, Vineet Verma, Xiangru Tang, Yanjun Shao, Eric Van Buren +6 more

The Trajectory of KoRV-A Evolution Indicates Initial Integration into the Koala Germline Genome Near Coffs Harbour

Research Square(2024)10.21203/rs.3.rs-5671983/v1

N/A

0DataRank · unranked

1 citations

Michaela D. J. Blyton, Birgit S. Koppetsch, Milky Abajorga, Jeremy Luban, Keith J. Chappell +3 more

Single-cell transcriptomic and genomic changes in the ageing human brain

Nature(2025)10.1038/s41586-025-09435-8

N/A

0DataRank · unranked

33 citations

Tianxiong Yu, Jennifer S. Ziegenfuss, Allie K. Tolles, Christina E. Baer, Cesar Bautista Sotelo +4 more

Evolution of KoRV-A transcriptional silencing in wild koalas

Cell(2025)10.1016/j.cell.2025.02.006

N/A

0DataRank · unranked

10 citations

Michaela D. J. Blyton, Milky Abajorga, Birgit S. Koppetsch, Samantha Ho, Bo Xu +6 more

Aub, Vasa and Armi localization to phase separated nuage is dispensable for piRNA biogenesis and transposon silencing in Drosophila

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.25.549160

N/A

0DataRank · unranked

2 citations

Nicholas Rice, Tianxiong Yu, Zhiping Weng, William E. Theurkauf, Samantha Ho

CELL-SPECIFIC HISTONE MODIFICATION MAPS LINK SCHIZOPHRENIA RISK TO THE NEURONAL EPIGENOME

European Neuropsychopharmacology(2019)10.1016/j.euroneuro.2017.08.406

N/A

0DataRank · unranked

0 citations

Gabriel Hoffman, Yan Jiang, Marija Kundakovic, Mads Engel Hauberg, Ying-chih Wang +10 more

The evolutionarily conserved piRNA-producing locus pi6 is required for male mouse fertility

Nature Genetics(2020)10.1038/s41588-020-0657-7

N/A

0DataRank · unranked

159 citations

Yu Fu, Katharine Cecchini, Deniz M. Özata, Amena Arif, Tianxiong Yu +5 more

Chemical modifications of adenine base editor mRNA and guide RNA expand its application scope

Nature Communications(2020)10.1038/s41467-020-15892-8

N/A

0DataRank · unranked

111 citations

Jordana M. Henderson, K. Coote, Yi Cheng, H. Valley, Xiao‐Ou Zhang +12 more

Comprehensive identification of alternative back-splicing in human tissue transcriptomes

Nucleic Acids Research(2020)10.1093/nar/gkaa005

N/A

0DataRank · unranked

71 citations

Xiao‐Ou Zhang, Tingting Jiang, Lingling Cai, Xiao Ru Huang, Qi Liu +6 more

Ribosomes guide pachytene piRNA formation on long intergenic piRNA precursors

Nature Cell Biology(2020)10.1038/s41556-019-0457-4

N/A

0DataRank · unranked

44 citations

Jiang Zhu, Li Xie, Ziwei Li, Rajyalakshmi Meduri, Xiaopeng Zhu +6 more

YAP1 Withdrawal in Hepatoblastoma Drives Therapeutic Differentiation of Tumor Cells to Functional Hepatocyte‐Like Cells

Hepatology(2020)10.1002/hep.31389

N/A

0DataRank · unranked

22 citations

Tomás Rodríguez, Haiwei Mou, Suet‐Yan Kwan, Henry Pratt, Xiao‐Ou Zhang +10 more

High-throughput modeling and scoring of TCR-pMHC complexes to predict cross-reactive peptides

Bioinformatics(2020)10.1093/bioinformatics/btaa1050

N/A

0DataRank · unranked

22 citations

Brian G. Pierce, Thom Vreven, Brian M. Baker, Zhiping Weng, Tyler Borrman

LogoJS: a Javascript package for creating sequence logos and embedding them in web applications

Bioinformatics(2020)10.1093/bioinformatics/btaa192

N/A

0DataRank · unranked

19 citations

Zhiping Weng, Henry Pratt

Integrated miRNA-/mRNA-Seq of the Habenulo-Interpeduncular Circuit During Acute Nicotine Withdrawal

Scientific Reports(2020)10.1038/s41598-020-57907-w

N/A

0DataRank · unranked

12 citations

Junko Tsuji, Rubing Zhao-Shea, Ciearra B. Smith, Susanna Molas, Andrew R. Tapper +3 more

A chromosomal connectome for psychiatric and metabolic risk variants in adult dopaminergic neurons

Genome Medicine(2020)10.1186/s13073-020-0715-x

N/A

0DataRank · unranked

43 citations

Tobias Halene, Jaroslav Bendl, Bibi Kassim, Gabriella Ben Hutta, Marina Iskhakova +23 more

Adaptive Evolution Targets a piRNA Precursor Transcription Network

Cell Reports(2020)10.1016/j.celrep.2020.01.109

N/A

0DataRank · unranked

32 citations

Tianxiong Yu, Gen Zhang, Nicholas Rice, Zhiping Weng, William E. Theurkauf +1 more

Transcriptomic Profiling Reveals Extraordinary Diversity of Venom Peptides in Unexplored Predatory Gastropods of the Genus Clavus

Genome Biology and Evolution(2020)10.1093/gbe/evaa083

N/A

0DataRank · unranked

25 citations

Maren Watkins, Qing Li, Samuel D. Robinson, Gisela P. Concepción, Mark Yandell +5 more

Genome-Wide Mapping of Human DNA Replication by Optical Replication Mapping Supports a Stochastic Model of Eukaryotic Replication

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.24.263459

N/A

0DataRank · unranked

18 citations

Kyle N. Klein, Karel Proesmans, Hongbo Yang, Claire Marchal, Xiaopeng Zhu +8 more

Genetic and Epigenetic Features of Promoters with Ubiquitous Chromatin Accessibility Support Ubiquitous Transcription of Cell-essential Genes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.02.364869

N/A

0DataRank · unranked

1 citations

Jill E. Moore, Xiao‐Ou Zhang, Zhiping Weng, Kaili Fan

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

UNC Libraries(2020)10.17615/d7n3-p041

Top 100%

0DataRank

Top 100%0 citations

Christopher M. Taylor, Saurabh Asthana, J Stamatoyannopoulos, Michael P. Snyder, Ewan Birney +26 more

Community-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology

UNC Libraries(2020)10.17615/35z7-9284

N/A

0DataRank · unranked

0 citations

Thom Vreven, Şefik Kerem Ovalı, Jacob E. Corn, Eva‐Maria Strauch, Julie C. Mitchell +27 more

Deletion and replacement of long genomic sequences using prime editing

Nature Biotechnology(2021)10.1038/s41587-021-01026-y

N/A

0DataRank · unranked

190 citations

Xiao‐Ou Zhang, Zhiping Weng, Wen Xue, Tingting Jiang

Liquid chromatin Hi-C characterizes compartment-dependent chromatin interaction dynamics

Nature Genetics(2021)10.1038/s41588-021-00784-4

N/A

0DataRank · unranked

152 citations

Tyler Borrman, Andrew D. Stephens, Denis L. J. Lafontaine, Sergey V. Venev, Zhiping Weng +3 more

An expanded benchmark for antibody-antigen docking and affinity prediction reveals insights into antibody recognition determinants

Structure(2021)10.1016/j.str.2021.01.005

N/A

0DataRank · unranked

125 citations

Thom Vreven, Jing Zhou, Iain H. Moal, Jeliazko R. Jeliazkov, Jeffrey J. Gray +3 more

Genome-wide mapping of human DNA replication by optical replication mapping supports a stochastic model of eukaryotic replication

Molecular Cell(2021)10.1016/j.molcel.2021.05.024

N/A

0DataRank · unranked

115 citations

Kyle N. Klein, Karel Proesmans, Hongbo Yang, Claire Marchal, Xiaopeng Zhu +8 more

A benchmark and an algorithm for detecting germline transposon insertions and measuring de novo transposon insertion frequencies

Nucleic Acids Research(2021)10.1093/nar/gkab010

N/A

0DataRank · unranked

60 citations

Xiao Ru Huang, Shengqian Dou, Xiaolu Tang, Shiqi Luo, William E. Theurkauf +3 more

Investigating the Potential Roles of SINEs in the Human Genome

Annual Review of Genomics and Human Genetics(2021)10.1146/annurev-genom-111620-100736

N/A

0DataRank · unranked

53 citations

Henry Pratt, Zhiping Weng, Xiao‐Ou Zhang

Long first exons and epigenetic marks distinguish conserved pachytene piRNA clusters from other mammalian genes

Nature Communications(2021)10.1038/s41467-020-20345-3

N/A

0DataRank · unranked

42 citations

Kaili Fan, Deniz M. Özata, Gen Zhang, Yu Fu, William E. Theurkauf +3 more

Genetic and epigenetic features of promoters with ubiquitous chromatin accessibility support ubiquitous transcription of cell-essential genes

Nucleic Acids Research(2021)10.1093/nar/gkab345

N/A

0DataRank · unranked

22 citations

Jill E. Moore, Xiao‐Ou Zhang, Zhiping Weng, Kaili Fan

piRNA-independent transposon silencing by the Drosophila THO complex

Developmental Cell(2021)10.1016/j.devcel.2021.08.021

N/A

0DataRank · unranked

19 citations

Tianxiong Yu, Swapnil S. Parhad, Samantha Ho, Zhiping Weng, William E. Theurkauf +1 more

Somatic piRNAs and Transposons are Differentially Expressed Coincident with Skeletal Muscle Atrophy and Programmed Cell Death

Frontiers in Genetics(2021)10.3389/fgene.2021.775369

N/A

0DataRank · unranked

12 citations

Travis Thomson, Christine Brown, Subhanita Ghosh, William E. Theurkauf, Zhiping Weng +2 more

YAP and TAZ are transcriptional co-activators of AP-1 proteins and STAT3 during breast cellular transformation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.18.431832

N/A

0DataRank · unranked

3 citations

Henry Pratt, Fengxiang Wei, Mingshi Gao, Zhiping Weng, Kevin Struhl +1 more

The testis-specific transcription factor TCFL5 responds to A-MYB to elaborate the male meiotic program in placental mammals

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.04.438419

N/A

0DataRank · unranked

1 citations

Tianxiong Yu, Katharine Cecchini, Haiwei Mou, Amena Arif, Cansu Colpan +6 more

Zhiping Weng

Indexed papers

Top data-sharing exemplar

Papers