Barbara E. Engelhardt

Also affiliated with Princeton University, Stanford University

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

54.2Author DataRank

Indexed papers

8in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

Papers

Driven by 47 papers — median percentile 98. Top paper: “A global reference for human genetic variation”.

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

Cell type–specific genetic regulation of gene expression across human tissues

Science(2020)10.1126/science.aaz8528

N/A

10.3DataRank · unranked

596 citations

François Aguet, Meritxell Oliva, Manuel Muñoz-Aguirre, Silva Kasela, Valentin Wucher +77 more

Genetic effects on gene expression across human tissues

Nature(2017)10.1038/nature24277

Top 1%

10.1DataRank

Top 1%4706 citations

Barbara E. Engelhardt, Stephen B. Montgomery, Sara Mostafavi, Ayellet V. Segrè, Hailei Zhang +227 more

A map of human genome variation from population-scale sequencing

Nature(2010)10.1038/nature09534

Top 2%

9.1DataRank

Top 2%8109 citations

Min Hu, Yuan Chen, Matthew N. Bainbridge, Richard M. Durbin, Si Quang Le +319 more

The impact of sex on gene expression across human tissues

Science(2020)10.1126/science.aba3066

N/A

9.0DataRank · unranked

727 citations

Manuel Muñoz-Aguirre, Sarah Kim-Hellmuth, Valentin Wucher, Ariel DH Gewirtz, Daniel J. Cotter +72 more

Determinants of telomere length across human tissues

Science(2020)10.1126/science.aaz6876

N/A

8.6DataRank · unranked

501 citations

Farzana Jasmine, Lin Chen, Meytal Chernoff, Tong Lin, Dayana Delgado +90 more

Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel

Nature Communications(2014)10.1038/ncomms4934

Top 2%

8.3DataRank

Top 2%460 citations

Jonathan Marchini, Peter Donnelly, Gerton Lunter, Jonathan L. Marchini, Simon Myers +364 more

The GTEx Consortium atlas of genetic regulatory effects across human tissues

Science(2020)10.1126/science.aaz1776

Top 2%

8.0DataRank

Top 2%5930 citations

Shankara Anand, Kristin G. Ardlie, Stacey Gabriel, Gad Getz, Aaron Graubert +95 more

A Quantitative Proteome Map of the Human Body

Cell(2020)10.1016/j.cell.2020.08.036

Top 4%

5.1DataRank

Top 4%487 citations

Meng Wang, Shin Lin, Ruiqi Jian, Xiao Li, Joanne Chan +95 more

Transcriptomic signatures across human tissues identify functional rare genetic variation

Science(2020)10.1126/science.aaz5900

N/A

5.0DataRank · unranked

166 citations

Benjamin J. Strober, Jonah Einson, Nathan S. Abell, François Aguet, Alvaro N. Barbeira +183 more

FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources

Cell Systems(2019)10.1016/j.cels.2019.09.011

N/A

4.7DataRank · unranked

66 citations

Lily Wang, Alex Jones, Megan L. Wojciechowicz, Denis Torre, Kathleen M. Jagodnik +31 more

A vast resource of allelic expression data spanning human tissues

Genome Biology(2020)10.1186/s13059-020-02122-z

Top 8%

2.7DataRank

Top 8%147 citations

François Aguet, Pejman Mohammadi, Kristin G. Ardlie, Anthony Philippakis, Leanne Haggerty +159 more

ACE inhibition and cardiometabolic risk factors, lung ACE2 and TMPRSS2 gene expression, and plasma ACE2 levels: a Mendelian randomization study

Royal Society Open Science(2020)10.1098/rsos.200958

N/A

1.2DataRank · unranked

19 citations

Marios Arvanitis, Paul Carter, Ana I. Hernández Cordero, Brian Jo, Ville Karhunen +28 more

FAIRshake: toolkit to evaluate the findability, accessibility, interoperability, and reusability of research digital resources

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/657676

N/A

1.1DataRank · unranked

9 citations

Lily Wang, Alex Jones, Megan L. Wojciechowicz, Denis Torre, Kathleen M. Jagodnik +30 more

Effect of predicted protein-truncating genetic variants on the human transcriptome

Science(2015)10.1126/science.1261877

N/A

0.877DataRank · unranked

345 citations

Matti Pirinen, Donald F. Conrad, Monkol Lek, Emily K. Tsang, Konrad J. Karczewski +206 more

Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease

Cell(2021)10.1016/j.cell.2021.03.050

N/A

0.804DataRank · unranked

212 citations

Daniel C. Nachun, Nicole M. Ferraro, Michael J. Gloudemans, Abhiram S. Rao, Craig Smail +168 more

Joint analysis of expression levels and histological images identifies genes associated with tissue morphology

Nature Communications(2021)10.1038/s41467-021-21727-x

N/A

0.686DataRank · unranked

96 citations

Gregory Darnell, Daniel Munro, Barbara E. Engelhardt, Jordan T. Ash

Sparse multi-output Gaussian processes for online medical time series prediction

BMC Medical Informatics and Decision Making(2020)10.1186/s12911-020-1069-4

N/A

0.641DataRank · unranked

71 citations

Bianca Dumitrascu, Gregory Darnell, Corey Chivers, Michael Draugelis, Kai Li +2 more

COP-E-CAT

(2021)10.1145/3459930.3469536

N/A

0.345DataRank · unranked

9 citations

Elizabeth C. Yoo, Jeff Soules, Krzysztof Laudański, Barbara E. Engelhardt, Aishwarya Mandyam

Differentially methylated regions and methylation QTLs for teen depression and early puberty in the Fragile Families Child Wellbeing Study

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.20.444959

Top 60%

0.243DataRank

Top 60%3 citations

Isabella N. Grabski, Derek Aguiar, Lisa Schneper, Archit Verma, Juan Castillo‐Fernandez +6 more

Answering open questions in biology using spatial genomics and structured methods

BMC Bioinformatics(2024)10.1186/s12859-024-05912-5

N/A

0DataRank · unranked

6 citations

Archit Verma, Barbara E. Engelhardt, Siddhartha G. Jena

Understanding TCR T cell knockout behavior using interpretable machine learning

PubMed(2024)10.1142/9789819807024_0028

N/A

0DataRank · unranked

1 citations

Archit Verma, Stefanie Bachl, Julia Carnevale, Barbara E. Engelhardt, Marcus Blennemann

Contrastive linear regression

arXiv (Cornell University)(2024)10.48550/arxiv.2401.03106

N/A

0DataRank · unranked

0 citations

Sarah K. Nyquist, Andrew Jones, Barbara E. Engelhardt, Didong Li, Boyang Zhang

Inverse Reinforcement Learning with Multiple Planning Horizons

arXiv (Cornell University)(2024)10.48550/arxiv.2409.18051

N/A

0DataRank · unranked

0 citations

Weiwei Pan, Finale Doshi-Velez, Barbara E. Engelhardt, Jiayu Yao

CANDOR: Counterfactual ANnotated DOubly Robust Off-Policy Evaluation

arXiv (Cornell University)(2024)10.48550/arxiv.2412.08052

N/A

0DataRank · unranked

0 citations

Shengpu Tang, Jiayu Yao, Jenna Wiens, Barbara E. Engelhardt, Aishwarya Mandyam

Integrated ‘omics analysis reveals human milk oligosaccharide biosynthesis programs in human lactocytes

iScience(2025)10.1016/j.isci.2025.113269

N/A

0DataRank · unranked

2 citations

Laasya Devi Annepureddy, Kristija Sejane, Annalee Fürst, G. Devon Trahan, Michael C. Rudolph +6 more

Assessing the Distributional Fidelity of Synthetic Chest X-rays using the Embedded Characteristic Score

arXiv (Cornell University)(2025)10.48550/arxiv.2501.00744

N/A

0DataRank · unranked

0 citations

Barbara E. Engelhardt, Edric Tam

SPARK : in silico simulations for benchmarking nascent RNA sequencing experiments

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.06.687082

N/A

0DataRank · unranked

0 citations

Jesse Lehman, Edric Tam, Shaimae Elhajjajy, Barbara E. Engelhardt, Athma A. Pai +1 more

A robust nonlinear low-dimensional manifold for single cell RNA-seq data

BMC Bioinformatics(2020)10.1186/s12859-020-03625-z

N/A

0DataRank · unranked

26 citations

Barbara E. Engelhardt, Archit Verma

netNMF-sc: leveraging gene–gene interactions for imputation and dimensionality reduction in single-cell expression analysis

Genome Research(2020)10.1101/gr.251603.119

N/A

0DataRank · unranked

121 citations

Bianca Dumitrascu, Barbara E. Engelhardt, Benjamin J. Raphael, Rebecca Elyanow

Optimal marker gene selection for cell type discrimination in single cell analyses

Nature Communications(2021)10.1038/s41467-021-21453-4

N/A

0DataRank · unranked

118 citations

Soledad Villar, Dustin G. Mixon, Barbara E. Engelhardt, Bianca Dumitrascu

Causal network inference from gene transcriptional time-series response to glucocorticoids

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008223

N/A

0DataRank · unranked

38 citations

Bianca Dumitrascu, Ian C. McDowell, Brian Jo, Alejandro Barrera, Linda K. Hong +4 more

A self-exciting point process to study multicellular spatial signaling patterns

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2026123118

N/A

0DataRank · unranked

9 citations

Siddhartha G. Jena, Danielle R. Isakov, Kazuhiro Aoki, Jared E. Toettcher, Barbara E. Engelhardt +1 more

Telescoping bimodal latent Dirichlet allocation to identify expression QTLs across tissues

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.27.466156

N/A

0DataRank · unranked

3 citations

F. William Townes, Barbara E. Engelhardt, Ariel DH Gewirtz

Contrastive latent variable modeling with application to case-control sequencing experiments

arXiv (Cornell University)(2021)10.48550/arxiv.2102.06731

N/A

0DataRank · unranked

1 citations

F. William Townes, Didong Li, Barbara E. Engelhardt, Andrew Jones

Compositional Q-learning for electrolyte repletion with imbalanced patient sub-populations

arXiv (Cornell University)(2021)10.48550/arxiv.2110.02879

N/A

0DataRank · unranked

0 citations

Andrew Jones, Yao, Jiayu, Krzysztof Laudański, Barbara E. Engelhardt, Aishwarya Mandyam

Nonnegative spatial factorization applied to spatial genomics

Nature Methods(2022)10.1038/s41592-022-01687-w

N/A

0DataRank · unranked

115 citations

Barbara E. Engelhardt, F. William Townes

A Poisson reduced-rank regression model for association mapping in sequencing data

BMC Bioinformatics(2022)10.1186/s12859-022-05054-6

N/A

0DataRank · unranked

27 citations

Andrew Jones, Barbara E. Engelhardt, Tiana Fitzgerald

Telescoping bimodal latent Dirichlet allocation to identify expression QTLs across tissues

Life Science Alliance(2022)10.26508/lsa.202101297

N/A

0DataRank · unranked

8 citations

F. William Townes, Barbara E. Engelhardt, Ariel DH Gewirtz

Alignment of spatial genomics and histology data using deep Gaussian processes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.10.475692

N/A

0DataRank · unranked

9 citations

F. William Townes, Didong Li, Barbara E. Engelhardt, Andrew Jones

Expression QTLs in single-cell sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.14.503915

N/A

0DataRank · unranked

5 citations

F. William Townes, Barbara E. Engelhardt, Ariel DH Gewirtz

A Poisson reduced-rank regression model for association mapping in sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.31.494236

N/A

0DataRank · unranked

0 citations

Andrew Jones, Barbara E. Engelhardt, Tiana Fitzgerald

Alignment of spatial genomics data using deep Gaussian processes

Nature Methods(2023)10.1038/s41592-023-01972-2

N/A

0DataRank · unranked

89 citations

F. William Townes, Didong Li, Barbara E. Engelhardt, Andrew Jones

Optimizing the design of spatial genomic studies

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.29.526115

N/A

0DataRank · unranked

1 citations

Diana Cai, Didong Li, Barbara E. Engelhardt, Andrew Jones

Adaptive Interventions with User-Defined Goals for Health Behavior Change

arXiv (Cornell University)(2023)10.48550/arxiv.2311.09483

N/A

0DataRank · unranked

1 citations

Jörke, Matthew, Denton, William, Barbara E. Engelhardt, Emma Brunskill, Aishwarya Mandyam

Probabilistic contrastive dimension reduction for case-control study data

The Annals of Applied Statistics(2024)10.1214/24-aoas1877

N/A

0DataRank · unranked

4 citations

Andrew Jones, Barbara E. Engelhardt, Didong Li

Optimizing the design of spatial genomic studies

Nature Communications(2024)10.1038/s41467-024-49174-4

N/A

0DataRank · unranked

6 citations

Diana Cai, Didong Li, Barbara E. Engelhardt, Andrew Jones

Barbara E. Engelhardt

Indexed papers

Top data-sharing exemplar

Papers