Philip E. Bourne

Biochemistry, Genetics and Molecular BiologyMaterials ScienceComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

131Author DataRank

Indexed papers

62in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 62 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Protein Data Bank

Acta Crystallographica Section D Biological Crystallography(2002)10.1107/s0907444902003451

Top 1%

12.6DataRank

Top 1%2640 citations

Tammy Battistuz, T. N. Bhat, Wolfgang F. Bluhm, Philip E. Bourne, Kyle Burkhardt +18 more

Papers

Driven by 409 papers — median percentile 61. Top paper: “Preprints for the life sciences”.

Preprints for the life sciences

Science(2016)10.1126/science.aaf9133

N/A

16.5DataRank · unranked

199 citations

Needhi Bhalla, Philip E. Bourne, Martin Chalfie, David G. Drubin, James S. Fraser +20 more

Addendum: The FAIR Guiding Principles for scientific data management and stewardship

Scientific Data(2019)10.1038/s41597-019-0009-6

N/A

14.2DataRank · unranked

264 citations

Michel J. Dumontier, IJsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak +50 more

The Protein Data Bank

Acta Crystallographica Section D Biological Crystallography(2002)10.1107/s0907444902003451

Top 1%

12.6DataRank

Top 1%2640 citations

Tammy Battistuz, T. N. Bhat, Wolfgang F. Bluhm, Philip E. Bourne, Kyle Burkhardt +18 more

[30] Macromolecular crystallographic information file

Methods in Enzymology(1997)10.1016/s0076-6879(97)77032-0

Top 1%

11.9DataRank

Top 1%177 citations

Helen M. Berman, Brian McMahon, Keith D. Watenpaugh, Paula M.D. Fitzgerald, Brian T. McMahon +3 more

BioJava: an open-source framework for bioinformatics in 2012

Bioinformatics(2012)10.1093/bioinformatics/bts494

N/A

10.4DataRank · unranked

183 citations

Andrew Yates, Spencer E. Bliven, Peter W. Rose, Julius Jacobsen, Peter V. Troshin +14 more

The RCSB Protein Data Bank: new resources for research and education

Nucleic Acids Research(2012)10.1093/nar/gks1200

Top 1%

10.3DataRank

Top 1%537 citations

Chunxiao Bi, Wolfgang F. Bluhm, Cole H. Christie, Dimitris Dimitropoulos, Shuchismita Dutta +13 more

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

Nucleic Acids Research(2014)10.1093/nar/gku1214

Top 1%

10.2DataRank

Top 1%538 citations

Andreas Prlić, Chunxiao Bi, Wolfgang F. Bluhm, Cole H. Christie, Shuchismita Dutta +12 more

SuperTarget and Matador: resources for exploring drug-target relationships

Nucleic Acids Research(2007)10.1093/nar/gkm862

Top 2%

8.4DataRank

Top 2%667 citations

M. Dunkel, M Campillos, C. Senger, E. Petsalaki, J. Ahmed +20 more

The Protein Data Bank and the challenge of structural genomics.

Nature Structural Biology(2000)10.1038/80734

Top 2%

8.2DataRank

Top 2%580 citations

T. N. Bhat, Philip E. Bourne, Zukang Feng, Helge Weissig, John Westbrook +3 more

Immune epitope database analysis resource

Nucleic Acids Research(2012)10.1093/nar/gks438

Top 2%

7.3DataRank

Top 2%521 citations

Z. Zhu, D. Tamang, P. Wang, C. Lundegaard, B. Peters +12 more

CE-MC: a multiple protein structure alignment server

Nucleic Acids Research(2004)10.1093/nar/gkh464

N/A

6.6DataRank · unranked

114 citations

S. Lu, Chittibabu Guda, Shan Lu, Eric D. Scheeff, Philip E. Bourne +1 more

A systematic review of natural language processing and text mining of symptoms from electronic patient-authored text data

International Journal of Medical Informatics(2019)10.1016/j.ijmedinf.2019.02.008

Top 3%

6.5DataRank

Top 3%235 citations

Theresa A. Koleck, Philip E. Bourne, Suzanne Bakken, Caitlin Dreisbach

Immune epitope database analysis resource (IEDB-AR)

Nucleic Acids Research(2008)10.1093/nar/gkn254

Top 3%

6.5DataRank

Top 3%402 citations

P. Wang, Y. Kim, P. Haste-Andersen, John E Beaver, Huynh-Hoa Bui +20 more

PROMISCUOUS: a database for network-based drug-repositioning

Nucleic Acids Research(2010)10.1093/nar/gkq1037

Top 3%

6.5DataRank

Top 3%227 citations

M. S. Murgueitio, M. Dunkel, S. Koerner, Joachim von Eichborn, Manuela S. Murgueitio +3 more

Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome

PLoS ONE(2013)10.1371/journal.pone.0080278

N/A

6.3DataRank · unranked

128 citations

Sarah L. Kinnings, Li Xie, Lei Xie, Yinliang Zhang, Philip E. Bourne +2 more

Ten Simple Rules for a Successful Collaboration

PLoS Computational Biology(2007)10.1371/journal.pcbi.0030044

N/A

5.9DataRank · unranked

93 citations

Philip E. Bourne, Quentin Vicens

Ten Simple Rules for Building and Maintaining a Scientific Reputation

PLoS Computational Biology(2011)10.1371/journal.pcbi.1002108

N/A

5.7DataRank · unranked

41 citations

Virginia Barbour, Philip E. Bourne

Evidence for treatment with estradiol for women with SARS-CoV-2 infection

BMC Medicine(2020)10.1186/s12916-020-01851-z

N/A

5.6DataRank · unranked

145 citations

Flaminia Coluzzi, Maurizio Simmaco, Cameron Mura, Philip E. Bourne, Max Heiland +3 more

The Protein Data Bank, 1999–

International Tables for Crystallography(2006)10.1107/97809553602060000722

Top 4%

5.6DataRank

Top 4%145 citations

T. N. Bhat, Helen M. Berman, John Westbrook, Zukang Feng, Gary L. Gilliland +4 more

Structure-based systems biology for analyzing off-target binding

Current Opinion in Structural Biology(2011)10.1016/j.sbi.2011.01.004

N/A

5.4DataRank · unranked

152 citations

Li Xie, Philip E. Bourne, Lei Xie

An alternative view of protein fold space

Proteins: Structure, Function, and Genetics(2000)10.1002/(sici)1097-0134(20000215)38:3<247::aid-prot2>3.0.co;2-t

N/A

5.3DataRank · unranked

93 citations

Philip E. Bourne, Ilya N. Shindyalov

Helix packing and subunit conformation in horse spleen apoferritin

Nature(1980)10.1038/288298a0

N/A

5.0DataRank · unranked

50 citations

Robert F. D. Stansfield, Philip E. Bourne, Pauline M. Harrison, George A. Clegg

IL-13 is a driver of COVID-19 severity

JCI Insight(2021)10.1172/jci.insight.150107

N/A

4.7DataRank · unranked

163 citations

Tara E. Sutherland, Chelsea Marie, Saskia Preissner, Benjamin T. Bradley, Rebecca M. Carpenter +23 more

A NEW ALGORITHM FOR THE ALIGNMENT OF MULTIPLE PROTEIN STRUCTURES USING MONTE CARLO OPTIMIZATION

Biocomputing 2001(2000)10.1142/9789814447362_0028

N/A

4.5DataRank · unranked

57 citations

Chittibabu Guda, Eric D. Scheeff, Philip E. Bourne, Ilya N. Shindyalov

Partitioning Protein Structures into Domains: Why Is it so Difficult?

Journal of Molecular Biology(2006)10.1016/j.jmb.2006.05.060

N/A

4.5DataRank · unranked

93 citations

Stella Veretnik, Ilya N. Shindyalov, Philip E. Bourne, Timothy A. Holland

Determining Cysteines Available for Covalent Inhibition Across the Human Kinome

Journal of Medicinal Chemistry(2017)10.1021/acs.jmedchem.6b01815

N/A

4.4DataRank · unranked

133 citations

Qingsong Liu, Spencer E. Bliven, Lei Xie, Philip E. Bourne, Zheng Zhao

The Mycobacterium tuberculosis Drugome and Its Polypharmacological Implications

PLoS Computational Biology(2010)10.1371/journal.pcbi.1000976

Top 5%

4.3DataRank

Top 5%104 citations

Li Xie, Kingston H. Fung, Richard M. Jackson, Lei Xie, Philip E. Bourne +1 more

BioLit: integrating biological literature with databases

Nucleic Acids Research(2008)10.1093/nar/gkn317

Top 5%

4.1DataRank

Top 5%38 citations

S. Kushch, P. R. Williams, J. Lynn Fink, Sergii Kushch, Paul Williams +2 more

In Silico Elucidation of the Molecular Mechanism Defining the Adverse Effect of Selective Estrogen Receptor Modulators

PLoS Computational Biology(2007)10.1371/journal.pcbi.0030217

N/A

4.0DataRank · unranked

83 citations

Jian Wang, Philip E. Bourne, Lei Xie

Ten Simple Rules for Getting Grants

PLoS Computational Biology(2006)10.1371/journal.pcbi.0020012

N/A

3.9DataRank · unranked

50 citations

Leo M. Chalupa, Philip E. Bourne

Toward Consistent Assignment of Structural Domains in Proteins

Journal of Molecular Biology(2004)10.1016/j.jmb.2004.03.053

N/A

3.7DataRank · unranked

68 citations

Philip E. Bourne, Nickolai N Alexandrov, Ilya N. Shindyalov, Nickolai Alexandrov, Stella Veretnik

Functional Coverage of the Human Genome by Existing Structures, Structural Genomics Targets, and Homology Models

PLoS Computational Biology(2005)10.1371/journal.pcbi.0010031

Top 6%

3.5DataRank

Top 6%65 citations

Philip E. Bourne, Lei Xie

A unified statistical model to support local sequence order independent similarity searching for ligand-binding sites and its application to genome-based drug discovery

Bioinformatics(2009)10.1093/bioinformatics/btp220

N/A

3.4DataRank · unranked

96 citations

Li Xie, Philip E. Bourne, Lei Xie

WhatBig Datameans to me

Journal of the American Medical Informatics Association(2014)10.1136/amiajnl-2014-002651

N/A

3.3DataRank · unranked

23 citations

Philip E. Bourne

Ten Simple Rules for Cultivating Open Science and Collaborative R&D

PLoS Computational Biology(2013)10.1371/journal.pcbi.1003244

N/A

2.9DataRank · unranked

31 citations

Aarthi Rao, Benjamin M . Good, Matthew H. Todd, Leslie Chan, Barry A. Bunin +5 more

A Multidimensional Strategy to Detect Polypharmacological Targets in the Absence of Structural and Sequence Homology

PLoS Computational Biology(2010)10.1371/journal.pcbi.1000648

N/A

2.7DataRank · unranked

76 citations

Rommie E. Amaro, Lei Xie, Michael D. Urbaniak, Michael A. J. Ferguson, Antti Haapalainen +7 more

Computational Biology Resources Lack Persistence and Usability

PLoS Computational Biology(2008)10.1371/journal.pcbi.1000136

Top 8%

2.7DataRank

Top 8%45 citations

J. Lynn Fink, Philip E. Bourne, Stella Veretnik

SMAP-WS: a parallel web service for structural proteome-wide ligand-binding site comparison

Nucleic Acids Research(2010)10.1093/nar/gkq400

N/A

2.6DataRank · unranked

63 citations

Tom Wurdinger, W. W. Li, Jie Ren, Lei Xie, Philip E. Bourne +1 more

Real‐world evidence from over one million COVID‐19 vaccinations is consistent with reactivation of the varicella‐zoster virus

Journal of the European Academy of Dermatology and Venereology(2022)10.1111/jdv.18184

N/A

2.5DataRank · unranked

59 citations

M. von Laffert, Saskia Preissner, Max Heiland, Susanne Nahles, Maximilian von Laffert +4 more

Outcome of a Workshop on Archiving Structural Models of Biological Macromolecules

Structure(2006)10.1016/j.str.2006.06.005

N/A

2.5DataRank · unranked

70 citations

Stephen K. Burley, Wah Chiu, Andrej Sali, Alexei Adzhubei, Philip E. Bourne +28 more

Developing multi-target therapeutics to fine-tune the evolutionary dynamics of the cancer ecosystem

Frontiers in Pharmacology(2015)10.3389/fphar.2015.00209

N/A

2.5DataRank · unranked

57 citations

Philip E. Bourne, Lei Xie

EpitopeViewer: a Java application for the visualization and analysis of immune epitopes in the Immune Epitope Database and Analysis Resource (IEDB).

Immunome Research(2007)10.1186/1745-7580-3-3

Top 9%

2.4DataRank

Top 9%51 citations

Philip E. Bourne, John Beaver, Julia Ponomarenko, John E Beaver

Conserved key amino acid positions (CKAAPs) derived from the analysis of common substructures in proteins

Proteins: Structure, Function, and Genetics(2000)10.1002/1097-0134(20010201)42:2<148::aid-prot20>3.0.co;2-r

N/A

2.3DataRank · unranked

39 citations

Wilfred W. Li, Ilya N. Shindyalov, Philip E. Bourne, Boojala Vijay B. Reddy, Boojala V. B. Reddy

IL-13 is a driver of COVID-19 severity

medRxiv(2020)10.1101/2020.06.18.20134353

N/A

2.3DataRank · unranked

73 citations

Tara E. Sutherland, Chelsea Marie, Ben T. Bradley, Rebecca M. Carpenter, Jeffrey M. Sturek +23 more

The Research Collaboratory for Structural Bioinformatics Protein Data Bank

Comprehensive Medicinal Chemistry II(2007)10.1016/b0-08-045044-x/00090-0

Top 10%

2.2DataRank

Top 10%24 citations

N. Deshpande, Q. Zhang, J.L. Flippen-Anderson, Philip E. Bourne, Wolfgang F. Bluhm +1 more

Towards Structural Systems Pharmacology to Study Complex Diseases and Personalized Medicine

PLoS Computational Biology(2014)10.1371/journal.pcbi.1003554

N/A

2.2DataRank · unranked

81 citations

Xiaoxia Ge, Hepan Tan, Li Xie, Yinliang Zhang, Thomas Hart +4 more

Insights into the binding mode of MEK type-III inhibitors. A step towards discovering and designing allosteric kinase inhibitors across the human kinome

PLOS ONE(2017)10.1371/journal.pone.0179936

N/A

2.2DataRank · unranked

47 citations

Lei Xie, Philip E. Bourne, Zheng Zhao

Building the biomedical data science workforce

PLOS Biology(2017)10.1371/journal.pbio.2003082

N/A

2.2DataRank · unranked

38 citations

Philip E. Bourne, Michelle Dunn, Michelle C. Dunn

Drug repurposing to target Ebola virus replication and virulence using structural systems pharmacology

BMC Bioinformatics(2016)10.1186/s12859-016-0941-9

N/A

2.0DataRank · unranked

51 citations

Che Martin, Raymond Fan, Philip E. Bourne, Lei Xie, Zheng Zhao

Multiscale modeling of the causal functional roles of nsSNPs in a genome-wide association study: application to hypoxia

BMC Genomics(2013)10.1186/1471-2164-14-s3-s9

N/A

1.9DataRank · unranked

35 citations

CLARA NG, Thahmina Ali, Raoul Valencia, Barbara L Ferreira, Vincent Xue +6 more

Ten Simple Rules for Graduate Students

PLoS Computational Biology(2007)10.1371/journal.pcbi.0030229

N/A

1.9DataRank · unranked

26 citations

Philip E. Bourne, Jenny Gu

An ontology driven architecture for derived representations of macromolecular structure

Bioinformatics(2002)10.1093/bioinformatics/18.9.1280

N/A

1.9DataRank · unranked

18 citations

Philip E. Bourne, John Westbrook, Douglas S. Greer

Systems biology of the structural proteome

BMC Systems Biology(2016)10.1186/s12918-016-0271-6

N/A

1.9DataRank · unranked

60 citations

Nathan Mih, Zhen Zhang, Edward J. O’Brien, Ke Chen, Roger L. Chang +5 more

Delineation of Polypharmacology across the Human Structural Kinome Using a Functional Site Interaction Fingerprint Approach

Journal of Medicinal Chemistry(2016)10.1021/acs.jmedchem.5b02041

N/A

1.9DataRank · unranked

54 citations

Li Xie, Lei Xie, Philip E. Bourne, Zheng Zhao

Sm/Lsm Genes Provide a Glimpse into the Early Evolution of the Spliceosome

PLoS Computational Biology(2009)10.1371/journal.pcbi.1000315

N/A

1.8DataRank · unranked

58 citations

Christopher Wills, Philippe Youkharibache, Ruben E. Valas, Philip E. Bourne, Stella Veretnik

Teaching Bioinformatics at the Secondary School Level

PLoS Computational Biology(2011)10.1371/journal.pcbi.1002242

N/A

1.8DataRank · unranked

18 citations

Philip E. Bourne, Fran Lewitter

Nothing about protein structure classification makes sense except in the light of evolution

Current Opinion in Structural Biology(2009)10.1016/j.sbi.2009.03.011

N/A

1.8DataRank · unranked

37 citations

Song Yang, Philip E. Bourne, Ruben E. Valas

Structural analysis of polarizing indels: an emerging consensus on the root of the tree of life

Biology Direct(2009)10.1186/1745-6150-4-30

N/A

1.8DataRank · unranked

29 citations

Philip E. Bourne, Ruben E. Valas

The Protein Data Bank and lessons in data management

Briefings in Bioinformatics(2004)10.1093/bib/5.1.23

Top 12%

1.8DataRank

Top 12%28 citations

Philip E. Bourne

Structure Comparison and Alignment

Methods of Biochemical Analysis(2003)10.1002/0471721204.ch16

N/A

1.8DataRank · unranked

34 citations

Ilya N. Shindyalov, Philip E. Bourne

The Protein Data Bank

Protein Structure(2003)10.1201/9780203911327.ch14

Top 12%

1.7DataRank

Top 12%33 citations

John Westbrook, Christine Zardecki, Helen M. Berman, Philip E. Bourne

Systematic Detection of Internal Symmetry in Proteins Using CE-Symm

Journal of Molecular Biology(2014)10.1016/j.jmb.2014.03.010

N/A

1.7DataRank · unranked

49 citations

Spencer E. Bliven, Peter W. Rose, Zaid K. Aziz, Philippe Youkharibache, Philip E. Bourne +2 more

Ten Simple Rules To Combine Teaching and Research

PLoS Computational Biology(2009)10.1371/journal.pcbi.1000358

N/A

1.6DataRank · unranked

20 citations

Philip E. Bourne, Quentin Vicens

An analysis of the Protein Data Bank in search of temporal and global trends.

Bioinformatics(1999)10.1093/bioinformatics/15.10.807

Top 13%

1.6DataRank

Top 13%22 citations

Helge Weissig, Philip E. Bourne

Assigning new GO annotations to protein data bank sequences by combining structure and sequence homology

Proteins: Structure, Function, and Bioinformatics(2005)10.1002/prot.20355

Top 13%

1.6DataRank

Top 13%22 citations

Philip E. Bourne, Ilya N. Shindyalov, Julia Ponomarenko

The Protein Data Bank: A Case Study in Management of Community Data

Current Proteomics(2004)10.2174/1570164043488252

Top 13%

1.5DataRank

Top 13%18 citations

John Westbrook, Helen M. Berman, Philip E. Bourne

The encyclopedia of life project: Grid software and deployment

New Generation Computing(2004)10.1007/bf03040951

N/A

1.5DataRank · unranked

26 citations

Robert W. Byrnes, Jim Hayes, Adam Birnbaum, Vicente M. Reyes, Atif Shahab +13 more

Realism about PDB

Nature Biotechnology(2007)10.1038/nbt0807-845

N/A

1.5DataRank · unranked

19 citations

Kim Henrick, Haruki Nakamura, Philip E. Bourne, John Westbrook, John L. Markley +1 more

The FAIR Guiding Principles for scientific data management and stewardship

Scientific Data(2016)10.1038/sdata.2016.18

N/A

1.5DataRank · unranked

17221 citations

Michel J. Dumontier, IJsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak +48 more

Protein structure resources

Acta Crystallographica Section D Biological Crystallography(2002)10.1107/s0907444902003906

Top 14%

1.5DataRank

Top 14%20 citations

Philip E. Bourne, Helge Weissig

Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm

PLOS Computational Biology(2019)10.1371/journal.pcbi.1006842

N/A

1.4DataRank · unranked

36 citations

Aleixa Lafita, Peter W. Rose, Guido Capitani, Andreas Prlić, Philip E. Bourne +1 more

A comparative proteomics resource: proteins of Arabidopsis thaliana

Genome Biology(2003)10.1186/gb-2003-4-8-r51

Top 15%

1.4DataRank

Top 15%26 citations

Greg B Quinn, Nickolai N Alexandrov, Philip E. Bourne, Ilya N. Shindyalov, Greg Quinn +2 more

Ten Simple Rules To Commercialize Scientific Research

PLoS Computational Biology(2012)10.1371/journal.pcbi.1002712

N/A

1.4DataRank · unranked

23 citations

Philip E. Bourne, Anthony C. Fletcher

Achievements and challenges in structural bioinformatics and computational biophysics

Bioinformatics(2014)10.1093/bioinformatics/btu769

N/A

1.3DataRank · unranked

28 citations

Philip E. Bourne, Rafael J. Najmanovich, Rafaël Najmanovich, Ilan Samish

The origin of a derived superkingdom: how a gram-positive bacterium crossed the desert to become an archaeon

Biology Direct(2011)10.1186/1745-6150-6-16

N/A

1.2DataRank · unranked

33 citations

Philip E. Bourne, Ruben E. Valas

Functional Coverage of the Human Genome by Existing Structures, Structural Genomics Targets and Homology Models

PLoS Computational Biology(2005)10.1371/journal.pcbi.0010031.eor

Top 17%

1.2DataRank

Top 17%10 citations

Philip E. Bourne, Lei Xie

Harnessing systematic protein–ligand interaction fingerprints for drug discovery

Drug Discovery Today(2022)10.1016/j.drudis.2022.07.004

N/A

1.2DataRank · unranked

43 citations

Philip E. Bourne, Zheng Zhao

SCREENING OF ENVIRONMENTAL CONTAMINANTS FOR ECDYSTEROID AGONIST AND ANTAGONIST ACTIVITY USING THE DROSOPHILA MELANOGASTER BII CELL IN VITRO ASSAY

Environmental Toxicology and Chemistry(2001)10.1897/1551-5028(2001)020<2038:soecfe>2.0.co;2

N/A

1.2DataRank · unranked

24 citations

Pensri Whiting, Tarlochan S. Dhadialla, Thomas H. Hutchinson, Philip E. Bourne, Laurence Dinan

Word add-in for ontology recognition: semantic enrichment of scientific literature

BMC Bioinformatics(2010)10.1186/1471-2105-11-103

N/A

1.1DataRank · unranked

19 citations

Pablo Fernicola, Rahul Chandran, Savas Parastatidis, Alex Wade, Oscar Naim +5 more

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

Protein Engineering Design and Selection(1998)10.1093/protein/11.9.739

N/A

1.1DataRank · unranked

2085 citations

Ilya N. Shindyalov, Philip E. Bourne

Multipolar representation of protein structure

BMC Bioinformatics(2006)10.1186/1471-2105-7-242

N/A

1.1DataRank · unranked

19 citations

Philip E. Bourne, Apostol Gramada

ElliPro: a new structure-based tool for the prediction of antibody epitopes

BMC Bioinformatics(2008)10.1186/1471-2105-9-514

N/A

1.1DataRank · unranked

1703 citations

Huynh-Hoa Bui, Wei Li, Nicholas Fusseder, Philip E. Bourne, Alessandro Sette +3 more

Design and implementation of a collaborative molecular graphics environment

Journal of Molecular Graphics and Modelling(2001)10.1016/s1093-3263(00)00055-3

N/A

1.1DataRank · unranked

10 citations

John L. Moreland, Philip E. Bourne, John Tate, John G. Tate

Ten simple rules for starting (and sustaining) an academic data science initiative

PLOS Computational Biology(2021)10.1371/journal.pcbi.1008628

N/A

1.0DataRank · unranked

14 citations

Arlyn E. Burgess, Philip E. Bourne, Micaela S. Parker

dConsensus: a tool for displaying domain assignments by multiple structure-based algorithms and for construction of a consensus assignment

BMC Bioinformatics(2010)10.1186/1471-2105-11-310

N/A

1.0DataRank · unranked

18 citations

Stella Veretnik, Philip E. Bourne, Kieran Alden

Conserved motifs in voltage-sensing and pore-forming modules of voltage-gated ion channel proteins

Biochemical and Biophysical Research Communications(2007)10.1016/j.bbrc.2006.10.190

N/A

1.0DataRank · unranked

14 citations

Philip E. Bourne, Chittibabu Guda, Purnima Guda

Confronting the Ethical Challenges of Big Data in Public Health

PLOS Computational Biology(2015)10.1371/journal.pcbi.1004073

N/A

1.0DataRank · unranked

11 citations

Philip E. Bourne

How open science helps researchers succeed

eLife(2016)10.7554/elife.16800

N/A

1.0DataRank · unranked

810 citations

Philip E. Bourne, C. Titus Brown, Stuart Buck, Amye Kenall, Jennifer Lin +10 more

Detection of circular permutations within protein structures using CE-CP

Bioinformatics(2014)10.1093/bioinformatics/btu823

N/A

0.996DataRank · unranked

20 citations

Philip E. Bourne, Andreas Prlić, Spencer E. Bliven

The RCSB Protein Data Bank: redesigned web site and web services

Nucleic Acids Research(2010)10.1093/nar/gkq1021

N/A

0.976DataRank · unranked

670 citations

C. Bi, Benjamin Yukich, Peter W. Rose, Bojan Beran, Bi Chen +12 more

High-throughput identification of interacting protein-protein binding sites

BMC Bioinformatics(2007)10.1186/1471-2105-8-223

N/A

0.929DataRank · unranked

12 citations

Wei Wang, Philip E. Bourne, Jo‐Lan Chung

How Ligands Interact with the Kinase Hinge

ACS Medicinal Chemistry Letters(2023)10.1021/acsmedchemlett.3c00212

N/A

0.910DataRank · unranked

30 citations

Philip E. Bourne, Zheng Zhao

Natural language processing of symptoms documented in free-text narratives of electronic health records: a systematic review

Journal of the American Medical Informatics Association(2019)10.1093/jamia/ocy173

N/A

0.906DataRank · unranked

418 citations

Caitlin Dreisbach, Philip E. Bourne, Suzanne Bakken, Theresa A. Koleck

Structural Insights into the Binding Modes of Viral RNA-Dependent RNA Polymerases Using a Function-Site Interaction Fingerprint Method for RNA Virus Drug Discovery

Journal of Proteome Research(2020)10.1021/acs.jproteome.0c00623

N/A

0.903DataRank · unranked

23 citations

Philip E. Bourne, Zheng Zhao

History of biological metal utilization inferred through phylogenomic analysis of protein structures

Proceedings of the National Academy of Sciences(2010)10.1073/pnas.0912491107

N/A

0.870DataRank · unranked

329 citations

Andrew Butcher, Ruben E. Valas, Philip E. Bourne, Gustavo Caetano-Anollés, Gustavo Caetano‐Anollés +1 more

Is “bioinformatics” dead?

PLOS Biology(2021)10.1371/journal.pbio.3001165

N/A

0.855DataRank · unranked

18 citations

Philip E. Bourne

The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications

BMC Bioinformatics(2005)10.1186/1471-2105-6-21

N/A

0.852DataRank · unranked

292 citations

Apostol Gramada, Oleksandr V Buzko, Qing Zhang, Philip E. Bourne, John L. Moreland

RCSB PDB Mobile : iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank

Bioinformatics(2014)10.1093/bioinformatics/btu596

N/A

0.850DataRank · unranked

16 citations

Chunxiao Bi, Cole H. Christie, Kyle Pang, Andreas Prlić, Takanori Nakane +7 more

Biodiversity data should be published, cited, and peer reviewed

Trends in Ecology & Evolution(2013)10.1016/j.tree.2013.05.002

N/A

0.843DataRank · unranked

274 citations

William K. Michener, Mark Gahegan, Zhi-Qiang Zhang, Philip E. Bourne, Zhi‐Qiang Zhang +1 more

Ten Simple Rules for Lifelong Learning, According to Hamming

PLOS Computational Biology(2015)10.1371/journal.pcbi.1004020

N/A

0.842DataRank · unranked

8 citations

Tracy E. Slanger, J. Valérie Groß, Philip E. Bourne, Paul Cullen, Tracy Slanger +1 more

Structural Evolution of the Protein Kinase–Like Superfamily

PLoS Computational Biology(2005)10.1371/journal.pcbi.0010049

N/A

0.840DataRank · unranked

269 citations

Philip E. Bourne, Eric D. Scheeff

Ten Simple Rules for avoiding and resolving conflicts with your colleagues

PLOS Computational Biology(2019)10.1371/journal.pcbi.1006708

N/A

0.832DataRank · unranked

19 citations

Philip E. Bourne, Teresa K. Attwood, Fran Lewitter

ANTI-INFECTIOUS DRUG REPURPOSING USING AN INTEGRATED CHEMICAL GENOMICS AND STRUCTURAL SYSTEMS BIOLOGY APPROACH

Biocomputing 2014(2013)10.1142/9789814583220_0014

N/A

0.831DataRank · unranked

19 citations

RUTH HAUPTMAN, Yinliang Zhang, Philip E. Bourne, Lei Xie, CLARA NG

Detecting evolutionary relationships across existing fold space, using sequence order-independent profile–profile alignments

Proceedings of the National Academy of Sciences(2008)10.1073/pnas.0704422105

N/A

0.829DataRank · unranked

251 citations

Philip E. Bourne, Lei Xie

The Protein Data Bank

Methods of Biochemical Analysis(2003)10.1002/0471721204.ch9

Top 24%

0.825DataRank

Top 24%9 citations

Helge Weissig, Philip E. Bourne

Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistry

Proceedings of the National Academy of Sciences(2006)10.1073/pnas.0605798103

N/A

0.820DataRank · unranked

236 citations

Song Yang, Brian Palenik, Philip E. Bourne, Christopher L. Dupont

A Machine Learning-Based Method To Improve Docking Scoring Functions and Its Application to Drug Repurposing

Journal of Chemical Information and Modeling(2011)10.1021/ci100369f

N/A

0.816DataRank · unranked

229 citations

Nina Liu, Peter J. Tonge, Richard M. Jackson, Lei Xie, Philip E. Bourne +1 more

Antibody-protein interactions: benchmark datasets and prediction tools evaluation

BMC Structural Biology(2007)10.1186/1472-6807-7-64

N/A

0.814DataRank · unranked

226 citations

Philip E. Bourne, Julia Ponomarenko

Novel Computational Approaches to Polypharmacology as a Means to Define Responses to Individual Drugs

Annual Review of Pharmacology and Toxicology(2012)10.1146/annurev-pharmtox-010611-134630

N/A

0.803DataRank · unranked

211 citations

Li Xie, Sarah L. Kinnings, Philip E. Bourne, Lei Xie

Progress with covalent small-molecule kinase inhibitors

Drug Discovery Today(2018)10.1016/j.drudis.2018.01.035

N/A

0.795DataRank · unranked

200 citations

Philip E. Bourne, Zheng Zhao

Pre-calculated protein structure alignments at the RCSB PDB website

Bioinformatics(2010)10.1093/bioinformatics/btq572

N/A

0.795DataRank · unranked

199 citations

Spencer E. Bliven, Peter W. Rose, Wolfgang F. Bluhm, Chris Bizon, Adam Godzik +2 more

End-to-end sequence-structure-function meta-learning predicts genome-wide chemical-protein interactions for dark proteins

PLOS Computational Biology(2023)10.1371/journal.pcbi.1010851

N/A

0.793DataRank · unranked

21 citations

Li Xie, Shuo Zhang, Muge Chen, Di He, Amitesh Badkul +8 more

Policy recommendations to ensure that research software is openly accessible and reusable

PLOS Biology(2023)10.1371/journal.pbio.3002204

N/A

0.744DataRank · unranked

15 citations

Philip E. Bourne, Caitlin Carter, Zach Chandler, Sayeed Choudhury, Stephen Jacobs +6 more

Structural biology meets data science: does anything change?

Current Opinion in Structural Biology(2018)10.1016/j.sbi.2018.09.003

N/A

0.721DataRank · unranked

17 citations

Eli J. Draizen, Philip E. Bourne, Cameron Mura

Antibacterial mechanisms identified through structural systems pharmacology

BMC Systems Biology(2013)10.1186/1752-0509-7-102

N/A

0.718DataRank · unranked

25 citations

Lei Xie, Philip E. Bourne, Bernhard Ø. Palsson, Roger L. Chang

Ten Simple Rules for Approaching a New Job

PLoS Computational Biology(2014)10.1371/journal.pcbi.1003660

N/A

0.716DataRank · unranked

5 citations

Philip E. Bourne

BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank

Bioinformatics(2017)10.1093/bioinformatics/btx101

N/A

0.708DataRank · unranked

10 citations

Andreas Prlić, Chunxiao Bi, Wolfgang F. Bluhm, Dimitris Dimitropoulos, Dong Xu +3 more

Grid Portal Interface for Interactive Use and Monitoring of High-Throughput Proteome Annotation

Lecture Notes in Computer Science(2005)10.1007/978-3-540-32251-1_6

N/A

0.675DataRank · unranked

9 citations

Danny Chuon, Toyotaro Suzumua, Wilfred W. Li, Robert W. Byrnes, Kouji Tanaka +7 more

Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistry

SciVee(2007)10.4016/2726.01

Top 30%

0.668DataRank

Top 30%15 citations

Song Yang, Brian Palenik, Christopher L. Dupont, Philip E. Bourne

Quality assurance for the query and distribution systems of the RCSB Protein Data Bank

Database(2011)10.1093/database/bar003

Top 31%

0.642DataRank

Top 31%8 citations

C. Bi, C. Shah, Benjamin Yukich, Wolfgang F. Bluhm, Bojan Beran +10 more

Systematic Exploration of Privileged Warheads for Covalent Kinase Drug Discovery

Pharmaceuticals(2022)10.3390/ph15111322

N/A

0.642DataRank · unranked

20 citations

Philip E. Bourne, Zheng Zhao

Exploiting sequence and structure homologs to identify protein–protein binding sites

Proteins: Structure, Function, and Bioinformatics(2005)10.1002/prot.20741

N/A

0.641DataRank · unranked

71 citations

Wei Wang, Philip E. Bourne, Jo‐Lan Chung

Phylogeny determined by protein domain content

SciVee(2007)10.4016/54.01

N/A

0.636DataRank · unranked

13 citations

Russell F. Doolittle, Philip E. Bourne, Song Yang

The Evolutionary History of Protein Domains Viewed by Species Phylogeny

PLoS ONE(2009)10.1371/journal.pone.0008378

N/A

0.631DataRank · unranked

66 citations

Philip E. Bourne, Song Yang

Will a Biological Database Be Different from a Biological Journal?

PLoS Computational Biology(2005)10.1371/journal.pcbi.0010034

N/A

0.624DataRank · unranked

63 citations

Philip E. Bourne

The evolution of the RCSB Protein Data Bank website

WIREs Computational Molecular Science(2011)10.1002/wcms.57

Top 32%

0.617DataRank

Top 32%11 citations

Bojan Beran, Chunxiao Bi, Wolfgang F. Bluhm, Dimitris Dimitropoulos, Zukang Feng +11 more

Cobweb: a Java applet for network exploration and visualisation

Bioinformatics(2011)10.1093/bioinformatics/btr195

N/A

0.613DataRank · unranked

8 citations

Philip E. Bourne, Robert Preissner, Joachim von Eichborn

STAR/mmCIF: An ontology for macromolecular structure

Bioinformatics(2000)10.1093/bioinformatics/16.2.159

N/A

0.601DataRank · unranked

54 citations

Philip E. Bourne, John Westbrook

Common EF‐hand motifs in cholinesterases and neuroligins suggest a role for Ca2+ binding in cell surface associations

Protein Science(2000)10.1110/ps.9.1.180

N/A

0.596DataRank · unranked

52 citations

T.C. Südhof, Igor F. Tsigelny, Palmer Taylor, Philip E. Bourne, Ilya N. Shindyalov +2 more

Limitations of Ab Initio Predictions of Peptide Binding to MHC Class II Molecules

PLoS ONE(2010)10.1371/journal.pone.0009272

N/A

0.571DataRank · unranked

44 citations

Peng Wang, Nikitas Papangelopoulos, Ying Xu, Alessandro Sette, Philip E. Bourne +5 more

The Plasmodium falciparum Drugome And Its Polypharmacological Implications

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/042481

N/A

0.559DataRank · unranked

7 citations

Li Xie, Lei Xie, Philip E. Bourne, Yinliang Zhang

Predicting the Polypharmacology of Drugs: Identifying New Uses through Chemoinformatics, Structural Informatics, and Molecular Modeling‐Based Approaches

Drug Repositioning(2012)10.1002/9781118274408.ch7

N/A

0.558DataRank · unranked

10 citations

Sarah L. Kinnings, Lei Xie, Philip E. Bourne, Li Xie

Developing international open science collaborations: Funder reflections on the Open Science Prize

PLOS Biology(2017)10.1371/journal.pbio.2002617

N/A

0.546DataRank · unranked

6 citations

Audie A. Atienza, Robert Kiley, David Carr, Aki MacFarlane, Vinay Pai +8 more

Toward effective software solutions for big biology

Nature Biotechnology(2015)10.1038/nbt.3240

N/A

0.546DataRank · unranked

37 citations

Joep de Ligt, Artem Tarasov, Ritsert C. Jansen, Edwin Cuppen, Philip E. Bourne +1 more

Advances in reversible covalent kinase inhibitors

Medicinal Research Reviews(2024)10.1002/med.22084

N/A

0.546DataRank · unranked

17 citations

Philip E. Bourne, Zheng Zhao

Deep generative models of protein structure uncover distant relationships across a continuous fold space

Nature Communications(2024)10.1038/s41467-024-52020-2

N/A

0.544DataRank · unranked

11 citations

Stella Veretnik, Cameron Mura, Philip E. Bourne, Eli J. Draizen

Translational Health Disparities Research in a Data-Rich World

Health Equity(2019)10.1089/heq.2019.0042

N/A

0.542DataRank · unranked

36 citations

DAVID BERRIGAN, James S. Jackson, David W.S. Wong, Frederick B. Wood, Joshua C. Denny +4 more

Zeta Inhibitory Peptide Disrupts Electrostatic Interactions That Maintain Atypical Protein Kinase C in Its Active Conformation on the Scaffold p62

Journal of Biological Chemistry(2015)10.1074/jbc.m115.676221

N/A

0.538DataRank · unranked

35 citations

Lei Xie, Kim Dore, Li Xie, Jason C. Del Rio, Charles C. King +8 more

Evidence for treatment with estradiol for women with SARS-CoV-2 infection

medRxiv(2020)10.1101/2020.08.21.20179671

N/A

0.526DataRank · unranked

8 citations

Flaminia Coluzzi, Maurizio Simmaco, Cameron Mura, Philip E. Bourne, Max Heiland +3 more

Curation of complex, context-dependent immunological data

BMC Bioinformatics(2006)10.1186/1471-2105-7-341

N/A

0.520DataRank · unranked

31 citations

Kerrie Vaughan, Laura Zarebski, Nima Salimi, Ward Fleri, Howard Grey +18 more

Superimpose: a 3D structural superposition server

Nucleic Acids Research(2008)10.1093/nar/gkn285

N/A

0.520DataRank · unranked

31 citations

A. Formella, C. Frommel, C. Gille, A. Goede, A. Guerler +17 more

Deep Generative Models of Protein Structure Uncover Distant Relationships Across a Continuous Fold Space

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.29.501943

N/A

0.512DataRank · unranked

8 citations

Stella Veretnik, Cameron Mura, Philip E. Bourne, Eli J. Draizen

Macromolecular Structure Databases: Past Progress and Future Challenges

Acta Crystallographica Section D Biological Crystallography(1998)10.1107/s0907444998009846

Top 38%

0.511DataRank

Top 38%3 citations

Ilya N. Shindyalov, Philip E. Bourne, Helge Weissig

Computational Prediction of Potential Inhibitors of the Main Protease of SARS-CoV-2

Frontiers in Chemistry(2020)10.3389/fchem.2020.590263

N/A

0.510DataRank · unranked

29 citations

María Paredes Ramos, Qiaofeng Chen, Horacio Pérez-Sánchez, Flaminia Coluzzi, Monica Rocco +8 more

Correction to “A Machine Learning-Based Method To Improve Docking Scoring Functions and Its Application to Drug Repurposing”

Journal of Chemical Information and Modeling(2011)10.1021/ci2001346

N/A

0.504DataRank · unranked

10 citations

Nina Liu, Peter J. Tonge, Richard M. Jackson, Lei Xie, Philip E. Bourne +1 more

CIF Applications. VIII. pdb2cif: translating PDB entries into mmCIF format

Journal of Applied Crystallography(1998)10.1107/s0021889897007309

Top 38%

0.504DataRank

Top 38%4 citations

F. C. Bernstein, Philip E. Bourne, H. J. Bernstein

Rigid Scaffolds Are Promising for Designing Macrocyclic Kinase Inhibitors

ACS Pharmacology & Translational Science(2023)10.1021/acsptsci.3c00078

N/A

0.499DataRank · unranked

10 citations

Philip E. Bourne, Zheng Zhao

Institutional Profile: University of California San Diego PharmaCogenomics Education Program (PharmGenEd™): Bridging the gap Between Science and Practice

Pharmacogenomics(2011)10.2217/pgs.10.213

N/A

0.494DataRank · unranked

26 citations

Joseph D Ma, Kelly C. Lee, James R. Halpert, Philip E. Bourne, Theodore G Ganiats +4 more

Overview of Structural Bioinformatics

(2005)10.1007/3-540-26888-x_2

N/A

0.485DataRank · unranked

4 citations

Stella Veretnik, Philip E. Bourne, Qing Zhang

A New Scoring Function and Associated Statistical Significance for Structure Alignment by CE

Journal of Computational Biology(2004)10.1089/cmb.2004.11.787

N/A

0.483DataRank · unranked

24 citations

T. Gregory Dewey, Ilya N. Shindyalov, Philip E. Bourne, Yuting Jia

Improving The Future of Research Communications and e-Scholarship (Dagstuhl Perspectives Workshop 11331)

DROPS (Schloss Dagstuhl – Leibniz Center for Informatics)(2012)10.4230/dagman.1.1.41

N/A

0.483DataRank · unranked

24 citations

Timothy W. Clark, Robert Dale, Anita de Waard, Iván Herman, Eduard Hovy +2 more

A New Scoring Function and Associated Statistical Significance for Structure Alignment by CE

Journal of Computational Biology(2004)10.1089/1066527042432260

N/A

0.483DataRank · unranked

24 citations

T. Gregory Dewey, Ilya N. Shindyalov, Philip E. Bourne, Yuting Jia

From biomedical cloud platforms to microservices: next steps in FAIR data and analysis

Scientific Data(2022)10.1038/s41597-022-01619-5

N/A

0.477DataRank · unranked

23 citations

Vivien R. Bonazzi, Philip E. Bourne, Tony Burdett, Timothy Clark, Robert L. Grossman +3 more

Other Structure‐Based Databases

Methods of Biochemical Analysis(2003)10.1002/0471721204.ch11

Top 40%

0.473DataRank

Top 40%5 citations

Philip E. Bourne, Helge Weissig

Wiggle—Predicting Functionally Flexible Regions from Primary Sequence

PLoS Computational Biology(2006)10.1371/journal.pcbi.0020090

N/A

0.470DataRank · unranked

22 citations

Michael Gribskov, Philip E. Bourne, Jenny Gu

Dicytosinium tetrachlorozincate, [C4H6N3O]2[ZnCl4]

Acta Crystallographica Section C Crystal Structure Communications(1983)10.1107/s0108270183005004

N/A

0.468DataRank · unranked

6 citations

M. R. Taylor, Philip E. Bourne, Max R. Taylor

Structural Bioinformatics 2nd Edition

SciVee(2009)10.4016/11276.01

N/A

0.464DataRank · unranked

21 citations

Jenny Gu, Philip E. Bourne

Ten Simple Rules for Organizing a Scientific Meeting

PLoS Computational Biology(2008)10.1371/journal.pcbi.1000080

N/A

0.464DataRank · unranked

21 citations

Nils Gehlenborg, Sarath Chandra Janga, Philip E. Bourne, Manuel Corpas

Ten Simple Rules for Selecting a Postdoctoral Position

PLoS Computational Biology(2006)10.1371/journal.pcbi.0020121

N/A

0.457DataRank · unranked

20 citations

Iddo Friedberg, Philip E. Bourne

BioEditor—simplifying macromolecular structure annotation

Bioinformatics(2003)10.1093/bioinformatics/btg103

N/A

0.457DataRank · unranked

20 citations

Paul A. Craig, Philip E. Bourne, P. Craig, David S. Goodsell, Peng Yang

Why It Takes a Village to Manage and Share Data

Harvard Data Science Review(2022)10.1162/99608f92.42eec111

N/A

0.454DataRank · unranked

11 citations

Philip E. Bourne, Christine L. Borgman

A CPU benchmark for protein crystallographic refinement

Computers in Biology and Medicine(1990)10.1016/0010-4825(90)90046-r

N/A

0.447DataRank · unranked

2 citations

Wayne A. Hendrickson, Philip E. Bourne

Real-world evidence for improved outcomes with histamine antagonists and aspirin in 22,560 COVID-19 patients

Signal Transduction and Targeted Therapy(2021)10.1038/s41392-021-00689-y

N/A

0.442DataRank · unranked

18 citations

Susanne Nahles, Max Heiland, Philip E. Bourne, Saskia Preissner, Robert Preissner +1 more

Ten simple rules for researchers while in isolation from a pandemic

PLOS Computational Biology(2020)10.1371/journal.pcbi.1007946

N/A

0.437DataRank · unranked

5 citations

Philip E. Bourne, Hoe‐Han Goh

The RCSB Protein Data Bank: site functionality and bioinformatics use cases

NCI Nature Pathway Interaction Database(2011)10.1038/pid.2011.1

N/A

0.434DataRank · unranked

5 citations

Wolfgang F. Bluhm, Bojan Beran, Chunxiao Bi, Dimitris Dimitropoulos, David S. Goodsell +7 more

Ten Simple Rules for Writing a PLOS Ten Simple Rules Article

PLoS Computational Biology(2014)10.1371/journal.pcbi.1003858

N/A

0.434DataRank · unranked

17 citations

Andrew Lonsdale, Philip E. Bourne, Harriet Dashnow

Combinatorial Approach for Large-scale Identification of Linked Peptides from Tandem Mass Spectrometry Spectra

Molecular & Cellular Proteomics(2014)10.1074/mcp.m113.035758

N/A

0.434DataRank · unranked

17 citations

Veronica G. Anania, Jeff Knott, Jennie R. Lill, Philip E. Bourne, Nuno Bandeira +2 more

Biological databases in the age of generative artificial intelligence

Bioinformatics Advances(2024)10.1093/bioadv/vbaf044

N/A

0.418DataRank · unranked

8 citations

Teresa K. Attwood, Judith A. Blake, Philip E. Bourne, Ana Conesa, Terry Gaasterland +17 more

Revealing Acquired Resistance Mechanisms of Kinase-Targeted Drugs Using an on-the-Fly, Function-Site Interaction Fingerprint Approach

Journal of Chemical Theory and Computation(2020)10.1021/acs.jctc.9b01134

N/A

0.382DataRank · unranked

10 citations

Philip E. Bourne, Zheng Zhao

Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction

BMC Bioinformatics(2006)10.1186/1471-2105-7-410

N/A

0.360DataRank · unranked

10 citations

Philip E. Bourne, Eric D. Scheeff

Exploring Extended Warheads toward Developing Cysteine-Targeted Covalent Kinase Inhibitors

Journal of Chemical Information and Modeling(2024)10.1021/acs.jcim.4c00890

N/A

0.350DataRank · unranked

7 citations

Philip E. Bourne, Zheng Zhao

Exploration of Dark Chemical Genomics Space via Portal Learning: Applied to Targeting the Undruggable Genome and COVID-19 Anti-Infective Polypharmacology

Research Square(2021)10.21203/rs.3.rs-1109318/v1

N/A

0.348DataRank · unranked

5 citations

Li Xie, Muge Chen, Yang Liu, Di He, Shuo Zhang +4 more

Playing catch-up in building an open research commons

Science(2022)10.1126/science.abo5947

N/A

0.345DataRank · unranked

9 citations

Vivien R. Bonazzi, Amy Brand, Bonnie Carroll, Ian Foster, Ramanathan V. Guha +10 more

Protein data representation and query using optimized data decomposition

Bioinformatics(1997)10.1093/bioinformatics/13.5.487

N/A

0.345DataRank · unranked

9 citations

Philip E. Bourne, Ilya N. Shindyalov

The curse of the protein ribbon diagram

PLOS Biology(2022)10.1371/journal.pbio.3001901

N/A

0.340DataRank · unranked

7 citations

Eli J. Draizen, Cameron Mura, Philip E. Bourne

Machine Learning for Classification of Protein Helix Capping Motifs

2019 Systems and Information Engineering Design Symposium (SIEDS)(2019)10.1109/sieds.2019.8735646

N/A

0.336DataRank · unranked

2 citations

Ruoyan Chen, Sri Vaishnavi Vemulapalli, Eli J. Draizen, Ke Wang, Cameron Mura +2 more

Statistically rigorous automated protein annotation

Bioinformatics(2004)10.1093/bioinformatics/bth039

N/A

0.330DataRank · unranked

8 citations

Philip E. Bourne, Werner G. Krebs

Informatics-enabled citizen science to advance health equity

Journal of the American Medical Informatics Association(2021)10.1093/jamia/ocab088

N/A

0.330DataRank · unranked

8 citations

Don E. Detmer, Katherine K Kim, Robin Austin, Anna McCollister, Courtney C. Rogers +3 more

Ten Simple Rules to Protect Your Intellectual Property

PLoS Computational Biology(2012)10.1371/journal.pcbi.1002766

N/A

0.330DataRank · unranked

8 citations

Anthony C. Fletcher, Philip E. Bourne, Mark Jolly

Protein Structure Evolution and the Scop Database

Methods of Biochemical Analysis(2003)10.1002/0471721204.ch12

Top 53%

0.317DataRank

Top 53%5 citations

Philip E. Bourne, Boojala Vijay B. Reddy, Boojala V. B. Reddy

Ten simple rules in considering a career in academia versus government

PLOS Computational Biology(2017)10.1371/journal.pcbi.1005729

N/A

0.312DataRank · unranked

7 citations

Philip E. Bourne

I Am Not a Scientist, I Am a Number

PLoS Computational Biology(2008)10.1371/journal.pcbi.1000247

N/A

0.312DataRank · unranked

7 citations

J. Lynn Fink, Philip E. Bourne

Ten simple rules for writing scientific op-ed articles

PLOS Computational Biology(2020)10.1371/journal.pcbi.1008187

N/A

0.312DataRank · unranked

7 citations

Philip E. Bourne, Hoe‐Han Goh

A new approach to scientific dissemination

Materials Today(2008)10.1016/s1369-7021(08)70131-7

N/A

0.312DataRank · unranked

7 citations

Leo M. Chalupa, Philip E. Bourne

Correction to “Structural Insights into Characterizing Binding Sites in Epidermal Growth Factor Receptor Kinase Mutants”

Journal of Chemical Information and Modeling(2021)10.1021/acs.jcim.1c01357

N/A

0.301DataRank · unranked

3 citations

Lei Xie, Philip E. Bourne, Zheng Zhao

A Birds-Eye (Re)View of Acid-Suppression Drugs, COVID-19, and the Highly Variable Literature

Frontiers in Pharmacology(2021)10.3389/fphar.2021.700703

N/A

0.292DataRank · unranked

6 citations

Saskia Preissner, Robert Preissner, Philip E. Bourne, Cameron Mura

Ten simple rules for managing laboratory information

PLOS Computational Biology(2023)10.1371/journal.pcbi.1011652

N/A

0.292DataRank · unranked

6 citations

Luis U. Aguilera, Sonja Billerbeck, Philip E. Bourne, Douglas Densmore, Paul Freemont +19 more

CACHE Challenge #2: Targeting the RNA Site of the SARS-CoV-2 Helicase Nsp13

Journal of Chemical Information and Modeling(2025)10.1021/acs.jcim.5c00535

N/A

0.292DataRank · unranked

6 citations

Madhushika Silva, Ayaz Ahmad, Oscar E. A. Arce, Roly J. Armstrong, Cheryl Arrowsmith +105 more

Translating PDB entries into mmCIF

Acta Crystallographica Section A Foundations of Crystallography(1996)10.1107/s010876739607657x

Top 57%

0.284DataRank

Top 57%1 citations

H. J. Bernstein, F. C. Bernstein, Philip E. Bourne

Prop3D: A flexible, Python-based platform for machine learning with protein structural properties and biophysical data

BMC Bioinformatics(2024)10.1186/s12859-023-05586-5

N/A

0.281DataRank · unranked

5 citations

John Readey, Cameron Mura, Philip E. Bourne, Eli J. Draizen

Structure of a potent neuromuscular blocking agent: Caracurine-II dimethochloride octahydrate, [C40H44N4O2]2+�2CI?�8H2O

Journal of Crystallographic and Spectroscopic Research(1985)10.1007/bf01171049

N/A

0.269DataRank · unranked

5 citations

Stephan L. Ginell, Barbara W. Low, Leslie Lessinger, L. Lessinger, Philip E. Bourne

Deep Learning of Protein Structural Classes: Any Evidence for an ‘Urfold’?

2020 Systems and Information Engineering Design Symposium (SIEDS)(2020)10.1109/sieds49339.2020.9106642

N/A

0.269DataRank · unranked

5 citations

Saad Saleem, Yonghyeon Kweon, Eli J. Draizen, Stella Veretnik, Cameron Mura +2 more

Protein crystal oscillation film data processing: a comparative study

Acta Crystallographica Section A Foundations of Crystallography(1981)10.1107/s0108767381090338

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0.269DataRank · unranked

5 citations

A. Achari, A. C. Bloomer, P. Carr, George A. Clegg, R. Cooper +23 more

Save the tree of life or get lost in the woods

Biology Direct(2010)10.1186/1745-6150-5-44

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0.269DataRank · unranked

5 citations

Philip E. Bourne, Ruben E. Valas

Bioinformatics meets data mining: time to dance?

Trends in Biotechnology(2000)10.1016/s0167-7799(00)01430-x

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0.241DataRank · unranked

4 citations

Philip E. Bourne

Harnessing Big Data for Systems Pharmacology

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/077115

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0.241DataRank · unranked

4 citations

Eli J. Draizen, Philip E. Bourne, Lei Xie

CIF Applications. IX. A new approach for representing and manipulating STAR files

Journal of Applied Crystallography(1998)10.1107/s0021889897017019

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0.241DataRank · unranked

4 citations

WT Chang, Philip E. Bourne, W. Chang

DOIs for DICOM Raw Images: Enabling Science Reproducibility

Radiology(2015)10.1148/radiol.15150144

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0.241DataRank · unranked

4 citations

Philip E. Bourne

Ten simple rules for more objective decision-making

PLOS Computational Biology(2020)10.1371/journal.pcbi.1007706

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0.241DataRank · unranked

4 citations

Georges A. Wagner, Philip E. Bourne, Anthony C. Fletcher

Resolving a distribution of charge into intrinsic multipole moments: A rankwise distributed multipole analysis

Physical Review E(2008)10.1103/physreve.78.066601

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0.241DataRank · unranked

4 citations

Philip E. Bourne, Apostol Gramada

Development of Internet-based multimedia applications

Trends in Biochemical Sciences(1999)10.1016/s0968-0004(99)01434-6

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0.241DataRank · unranked

4 citations

Ashton Taylor, Hsi-Ping Wang, Philip E. Bourne, Gregory B. Quinn

One thousand simple rules

PLOS Computational Biology(2018)10.1371/journal.pcbi.1006670

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0.241DataRank · unranked

4 citations

Scott Markel, Jason A. Papin, Fran Lewitter, Philip E. Bourne

A Database of Pairwise Aligned 3-D Structures for the Acetylcholinesterases, Lipases and Other Homologous Proteins

Structure and Function of Cholinesterases and Related Proteins(1998)10.1007/978-1-4899-1540-5_131

Top 62%

0.223DataRank

Top 62%2 citations

Ilya N. Shindyalov, Philip E. Bourne

Prop3D: A Flexible, Python-based Platform for Machine Learning with Protein Structural Properties and Biophysical Data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.27.522071

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0.220DataRank · unranked

3 citations

John Readey, Cameron Mura, Philip E. Bourne, Eli J. Draizen

AI-powered programmable virtual humans toward human physiologically-based drug discovery

Drug Discovery Today(2025)10.1016/j.drudis.2025.104497

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0.216DataRank · unranked

3 citations

Philip E. Bourne, Lei Xie, You Wu

Design and use of a software framework to obtain information derived from macromolecular structure data

Proceedings of the Twenty-Eighth Annual Hawaii International Conference on System Sciences HICSS-95(1995)10.1109/hicss.1995.375336

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0.208DataRank · unranked

3 citations

W. Chang, J.A. Cooper, Ilya N. Shindyalov, Weider Chang, Juan A. Cooper +1 more

Ten simple rules for good leadership

PLOS Computational Biology(2022)10.1371/journal.pcbi.1010133

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0.208DataRank · unranked

3 citations

Philip E. Bourne

Announcement of the BioSync web site.

Nature Structural Biology(2001)10.1038/90359

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0.208DataRank · unranked

3 citations

Ward Fleri, Wolfgang F. Bluhm, Philip E. Bourne, Janet L. Smith, John Westbrook +1 more

Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/297960

N/A

0.208DataRank · unranked

3 citations

Aleixa Lafita, Peter W. Rose, Guido Capitani, Andreas Prlić, Philip E. Bourne +1 more

Advance in Reversible Covalent Kinase Inhibitors

arXiv (Cornell University)(2021)10.48550/arxiv.2106.11698

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0.208DataRank · unranked

3 citations

Philip E. Bourne, Zheng Zhao

Let's Make Those Book Chapters Open Too!

PLoS Computational Biology(2013)10.1371/journal.pcbi.1002941

N/A

0.208DataRank · unranked

3 citations

Philip E. Bourne

Structural Evolution of the Protein Kinase-Like Superfamily

PLoS Computational Biology(2005)10.1371/journal.pcbi.0010049.eor

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0.208DataRank · unranked

3 citations

Eric D. Scheeff, Philip E. Bourne

Membranes Engineering and design

Current Opinion in Structural Biology(2001)10.1016/s0959-440x(00)00221-9

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0.208DataRank · unranked

3 citations

Philip E. Bourne

Coarse-graining the electrostatic potential via distributed multipole expansions

Computer Physics Communications(2011)10.1016/j.cpc.2011.03.014

N/A

0.208DataRank · unranked

3 citations

Philip E. Bourne, Apostol Gramada

The macromolecular CIF dicitionary

Acta Crystallographica Section A Foundations of Crystallography(1993)10.1107/s0108767378088364

N/A

0.191DataRank · unranked

1 citations

P. M. D. Fitzgerald, Keith David Watenpaugh, Helen M. Berman, Philip E. Bourne, Keith D. Watenpaugh

Ten Years of PLoS‡ Computational Biology: A Decade of Appreciation and Innovation

PLOS Computational Biology(2015)10.1371/journal.pcbi.1004317

N/A

0.172DataRank · unranked

2 citations

Steven E. Brenner, Michael B. Eisen, Philip E. Bourne

A local macromolecular structure database for crystallographic laboratories

Acta Crystallographica Section A Foundations of Crystallography(1996)10.1107/s0108767396095967

Top 67%

0.172DataRank

Top 67%1 citations

Philip E. Bourne, Ilya N. Shindyalov

Real-world Evidence for Preventive Effects of Statins on Cancer Incidence: A Trans-Atlantic Analysis

medRxiv(2021)10.1101/2021.07.20.21260891

N/A

0.165DataRank · unranked

2 citations

Fabian Zincke, Andreas Eckert, Dennis Kobelt, Saskia Preissner, Juliane Maria Liebeskind +12 more

CASP and CAFASP Experiments and Their Findings

Methods of Biochemical Analysis(2003)10.1002/0471721204.ch24

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0.165DataRank · unranked

2 citations

Philip E. Bourne

Die Vorstandskolumne

Informatik-Spektrum(2012)10.1007/s00287-011-0592-1

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0.165DataRank · unranked

2 citations

Philip E. Bourne

Ten simple rules for using entrepreneurship skills to improve research careers and culture

PLOS Computational Biology(2022)10.1371/journal.pcbi.1009946

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0.165DataRank · unranked

2 citations

David Dent, Philip E. Bourne, Matt Bawn

UCSD Pharm201 Structural Bioinformatics Futures

SciVee(2011)10.4016/37166.01

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0.165DataRank · unranked

2 citations

Philip E. Bourne

PRONUC: a software package for the analysis of protein and nucleic acid sequences

Computer Methods and Programs in Biomedicine(1987)10.1016/0169-2607(87)90062-9

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0.165DataRank · unranked

2 citations

Nikhil Desai, Philip E. Bourne

3-Thioxo-2-pyridinecarboxylic acid, C6H5NO2S. Redetermination of the structure

Acta Crystallographica Section C Crystal Structure Communications(1983)10.1107/s0108270183004345

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0.165DataRank · unranked

2 citations

M. R. Taylor, Philip E. Bourne, Max R. Taylor

Critical data ethics pedagogies: Three (non-rival) approaches

Big Data & Society(2023)10.1177/20539517231203666

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0.165DataRank · unranked

2 citations

Caitlin Donahue Wylie, Philip E. Bourne, Luis Felipe R. Murillo

Clinical Evidence for Improved Outcomes with Histamine Antagonists and Aspirin in 22,560 COVID-19 Patients

medRxiv(2021)10.1101/2021.03.29.21253914

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0.165DataRank · unranked

2 citations

Saskia Preissner, Susanne Nahles, Max Heiland, Philip E. Bourne, Robert Preissner +1 more

Life is three-dimensional, and it begins with molecules

PLOS Biology(2017)10.1371/journal.pbio.2002041

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0.165DataRank · unranked

2 citations

Philip E. Bourne

Ten Simple Rules for Starting (and Sustaining) an Academic Data Science Initiative

OSF Preprints (OSF Preprints)(2020)10.31219/osf.io/wu4fv

N/A

0.165DataRank · unranked

2 citations

Arlyn E. Burgess, Philip E. Bourne, Micaela S. Parker

CACHE Challenge #2: Targeting the RNA Site of the SARS-CoV-2 Helicase Nsp13

ChemRxiv(2025)10.26434/chemrxiv-2025-8f0rq-v3

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0.165DataRank · unranked

2 citations

Madhushika Silva, Abd Al‐Aziz A. Abu‐Saleh, Ayaz Ahmad, Jesus Antonio Alvarado-Huayhuaz, Oscar E. A. Arce +104 more

Structural Bioinformatics 2nd Edition Eds Gu & Bourne

SciVee(2009)10.4016/11375.01

N/A

0.165DataRank · unranked

2 citations

Philip E. Bourne, Jenny Gu

Wiggle - Predicting Functionally Flexible Regions from Primary Sequence

PLoS Computational Biology(2005)10.1371/journal.pcbi.0020090.eor

N/A

0.153DataRank · unranked

1 citations

Michael Gribskov, Philip E. Bourne, Jenny Gu

CACHE Challenge #2: Targeting the RNA Site of the SARS-CoV-2 Helicase Nsp13

ChemRxiv(2025)10.26434/chemrxiv-2025-8f0rq

N/A

0.150DataRank · unranked

1 citations

Madhushika Silva, Abd Al‐Aziz A. Abu‐Saleh, Ayaz Ahmad, Jesus Antonio Alvarado-Huayhuaz, Oscar E. A. Arce +104 more

Systematic exploration of privileged warheads for covalent kinase drug discovery

ChemRxiv(2022)10.26434/chemrxiv-2022-nlb0m

N/A

0.127DataRank · unranked

1 citations

Philip E. Bourne, Zheng Zhao

Use of conserved key amino acid positions to morph protein folds

Biopolymers(2002)10.1002/bip.10152

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0.126DataRank · unranked

1 citations

Wilfred W. Li, Philip E. Bourne, Boojala Vijay B. Reddy, Boojala V. B. Reddy

The Biological Data Sustainability Paradox

arXiv (Cornell University)(2023)10.48550/arxiv.2311.05668

N/A

0.109DataRank · unranked

1 citations

Philip E. Bourne, Terence Johnson

TRANSLATING BIOLOGY: TEXT MINING TOOLS THAT WORK – Session Introduction

Biocomputing 2008(2007)10.1142/9789812776136_0053

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0.104DataRank · unranked

1 citations

HONG YU, Philip E. Bourne, Lynette Hirschman, Kevin Bretonnel Cohen

Ten Simple Rules for Getting a Grant

SciVee(2012)10.4016/39412.01

N/A

0.104DataRank · unranked

1 citations

Philip E. Bourne

Ten simple rules when considering retirement

PLOS Computational Biology(2018)10.1371/journal.pcbi.1006411

N/A

0.104DataRank · unranked

1 citations

Philip E. Bourne

Advances in computing for macromolecular crystallography

Crystallographic Computing 6(1993)10.1093/oso/9780198557883.003.0018

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0.104DataRank · unranked

1 citations

Philip E. Bourne

The status of structural genomics

TARGETS(2003)10.1016/s1477-3627(03)02370-5

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0.104DataRank · unranked

1 citations

Philip E. Bourne

Ten simple rules for considering preprints

(2016)10.7287/peerj.preprints.2669v1

N/A

0.104DataRank · unranked

1 citations

Jessica K. Polka, Ronald D. Vale, Robert Kiley, Philip E. Bourne

Using the Structural Kinome to Systematize Kinase Drug Discovery

Biochemistry(2021)10.5772/intechopen.100109

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0.104DataRank · unranked

1 citations

Philip E. Bourne, Zheng Zhao

An integrated workflow for proteome-wide off-target identification and polypharmacology drug design

2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops(2012)10.1109/bibmw.2012.6470348

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0.104DataRank · unranked

1 citations

Philip E. Bourne, Li Xie, Lei Xie, Thomas Evangelidis

Structural Analysis of Polarizing Indels Argues the Root of the Tree of Life is Near the Chloroflexi

Nature Precedings(2009)10.1038/npre.2009.3290.1

N/A

0.104DataRank · unranked

1 citations

Philip E. Bourne, Ruben E. Valas

Data Acquisition, Curation, and Use for a Continuously Learning Health System: A Vital Direction for Health and Health Care

NAM Perspectives(2016)10.31478/201609w

N/A

0.104DataRank · unranked

1 citations

Harlan M. Krumholz, Philip E. Bourne, National Institutes of Health, Medtronic, Harold L. Paz +6 more

PLoS Computational Biology Conference Postcards from PSB 2010

PLoS Computational Biology(2010)10.1371/journal.pcbi.1000746

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0.104DataRank · unranked

1 citations

Matthew W. Lux, Philip E. Bourne, Ruchira S. Datta

Ten Simple Rules for Starting a Company

PLoS Computational Biology(2012)10.1371/journal.pcbi.1002439

N/A

0.104DataRank · unranked

1 citations

Philip E. Bourne, Anthony C. Fletcher

The reaming of life: based on the 2010 Jim Gray eScience Award Lecture

Concurrency and Computation: Practice and Experience(2012)10.1002/cpe.2924

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0.104DataRank · unranked

1 citations

Philip E. Bourne

AI in the Broader Context of Data Science

Artificial Intelligence for Science(2023)10.1142/9789811265679_0004

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0.104DataRank · unranked

1 citations

Philip E. Bourne, Rafael C. Alvarado

Harnessing systematic protein-ligand interaction fingerprints for drug discovery

ChemRxiv(2022)10.26434/chemrxiv-2022-b0zq0

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0.104DataRank · unranked

1 citations

Philip E. Bourne, Zheng Zhao

Ten simple rules for humane data science

PLOS Computational Biology(2023)10.1371/journal.pcbi.1011698

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0.104DataRank · unranked

1 citations

Philip E. Bourne, Hassan Masum

The Least Difference in Means: A Statistic for Effect Size Strength and Practical Significance

arXiv (Cornell University)(2022)10.48550/arxiv.2205.12958

N/A

0.104DataRank · unranked

1 citations

Yaotian Wang, Heman Shakeri, Philip E. Bourne, Bruce A. Corliss

Insights into the binding mode of MEK type-III inhibitors. A step towards discovering and designing allosteric kinase inhibitors across the human kinome

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/076711

N/A

0.104DataRank · unranked

1 citations

Lei Xie, Philip E. Bourne, Zheng Zhao

Statistical and visual morph movie analysis of crystallographic mutant selection bias in protein mutation resource data

PubMed(2004)10.1109/csb.2003.1227317

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0.104DataRank · unranked

1 citations

Philip E. Bourne, Werner G. Krebs

Big data in biomedicine — An NIH perspective

2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)(2015)10.1109/bibm.2015.7359644

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0.104DataRank · unranked

1 citations

Philip E. Bourne

Contra-Analysis: Prioritizing Meaningful Effect Size in Scientific Research

arXiv (Cornell University)(2022)10.48550/arxiv.2210.04867

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0.104DataRank · unranked

1 citations

Yaotian Wang, Heman Shakeri, Philip E. Bourne, Bruce A. Corliss

Protein Structures: From Famine to Feast

American Scientist(2002)10.1511/2002.27.350

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0.104DataRank · unranked

1 citations

Helen M. Berman, David S. Goodsell, Philip E. Bourne

MSG(Molecular Scene Generator): a Web-based application for the visualization of macromolecular structures

Journal of Applied Crystallography(1999)10.1107/s0021889899010602

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0.104DataRank · unranked

1 citations

John Tate, John L. Moreland, Philip E. Bourne, John G. Tate

Pharmacy Informatics

(2009)10.1201/9781420071764

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0.104DataRank · unranked

1 citations

Susan M. McGuinness, Philip E. Bourne, Philip O. Anderson

Ten simple rules to aid in achieving a vision

PLOS Computational Biology(2019)10.1371/journal.pcbi.1007395

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0.104DataRank · unranked

1 citations

Philip E. Bourne

Selecting a processor for computations in molecular biophysics

Computers in Biology and Medicine(1988)10.1016/0010-4825(88)90021-2

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0.104DataRank · unranked

1 citations

Wayne A. Hendrickson, Philip E. Bourne

Ten Simple Rules for Getting Grants

SciVee(2007)10.4016/2826.01

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0.104DataRank · unranked

1 citations

Philip E. Bourne, Leo M. Chalupa

ISMB 2006

Bioinformatics(2006)10.1093/bioinformatics/btl373

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0.104DataRank · unranked

1 citations

Willem M. de Vos, Søren Brunak, Philip E. Bourne

What Is Pharmacy Informatics?

Pharmacy Informatics(2009)10.1201/9781420071764-7

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0.104DataRank · unranked

1 citations

Susan M. McGuinness, Philip E. Bourne, Philip O. Anderson

Data Science: Transformation of Research and Scholarship

Health Informatics(2017)10.1007/978-3-319-53300-1_10

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0.104DataRank · unranked

1 citations

Philip E. Bourne, Lynda R. Hardy

Protein-nucleic acid interactions — Folding and binding Web alert

Current Opinion in Structural Biology(1999)10.1016/s0959-440x(99)90000-3

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0.104DataRank · unranked

1 citations

Judith Murray-Rust, Jeremy H Lakeyt, Judith Murray‐Rust, Philip E. Bourne

What Is Pharmacy Informatics?

Pharmacy Informatics(2009)10.1201/9781420071764-c1

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0.104DataRank · unranked

1 citations

Philip O. Anderson, Susan M. McGuinness, Philip E. Bourne

STATISTICAL AND VISUAL MORPH MOVIE ANALYSIS OF CRYSTALLOGRAPHIC MUTANT SELECTION BIAS IN PROTEIN MUTATION RESOURCE DATA

Journal of Bioinformatics and Computational Biology(2004)10.1142/s0219720004000478

Top 78%

0.104DataRank

Top 78%1 citations

Philip E. Bourne, Werner G. Krebs

ISMB 2006

PLoS Computational Biology(2006)10.1371/journal.pcbi.0020011

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0.104DataRank · unranked

1 citations

Philip E. Bourne, Søren Brunak, Goran Neshich

Communication of Scientific Information: Is It Time to Reassess?

Clinical Chemistry(2013)10.1373/clinchem.2012.194738

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0.104DataRank · unranked

1 citations

John Sack, Michael A. Keller, Anurag Acharya, Philip E. Bourne, Mike Rossner +2 more

Ten simple rules for starting research in your late teens

PLOS Computational Biology(2020)10.1371/journal.pcbi.1008403

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0.104DataRank · unranked

1 citations

Mike Chalupa, Abigail M. Newbury, Jack Chalupa, Philip E. Bourne, Cameron Mura

Carbohydrates and glycoconjugates Biophysical methods

Current Opinion in Structural Biology(1999)10.1016/s0959-440x(99)00023-8

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0.104DataRank · unranked

1 citations

Philip E. Bourne, Judith Murray-Rust, Judith Murray‐Rust, Jeremy H. Lakey

Ten Simple Rules for Good Presentations

SciVee(2007)10.4016/2903.01

N/A

0.104DataRank · unranked

1 citations

Philip E. Bourne

MAD-FC: A fold change visualization with readability, proportionality, and symmetry

PLOS ONE(2024)10.1371/journal.pone.0304632

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0.104DataRank · unranked

1 citations

Yaotian Wang, Francis P. Driscoll, Heman Shakeri, Philip E. Bourne, Bruce A. Corliss

Ten Simple Rules for Researchers While in Isolation from a Pandemic

OSF Preprints (OSF Preprints)(2020)10.31219/osf.io/h9fyj

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0.104DataRank · unranked

1 citations

Hoe‐Han Goh, Philip E. Bourne

Folding and binding: Protein–nucleic acid interactions

Current Opinion in Structural Biology(2000)10.1016/s0959-440x(99)90023-4

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0.104DataRank · unranked

1 citations

Judith Murray-Rust, Jeremy H. Lakey, Judith Murray‐Rust, Philip E. Bourne

DeepUrfold Supplemental Material

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.6916524

Top 100%

0DataRank

Top 100%0 citations

Stella Veretnik, Cameron Mura, Philip E. Bourne, Eli J. Draizen

Ten simple rules for considering preprints

(2016)10.7287/peerj.preprints.2669

N/A

0DataRank · unranked

0 citations

Jessica K. Polka, Ronald D. Vale, Robert Kiley, Philip E. Bourne

The structure of erabutoxin B at 1.4 Å resolution. Structure/function relations including functional implications of the extensive water structure and side-chain disorder in the reactive site

Acta Crystallographica Section A Foundations of Crystallography(1984)10.1107/s0108767384098950

N/A

0DataRank · unranked

0 citations

P. W. R. Corfield, A. Sato, B. W. Low, J. L. Smith, Philip E. Bourne +4 more

Non relevant results

Figshare(2013)10.6084/m9.figshare.776888

Top 100%

0DataRank

Top 100%0 citations

Yinliang Zhang, Yolanda Gil, Li Xie, Sarah L. Kinnings, Philip E. Bourne +2 more

Digital research/analog publishing – one scientist's view

Serials: The Journal for the Serials Community(2011)10.1629/24119

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0DataRank · unranked

0 citations

Philip E. Bourne

Science Olympiad Twin Peaks Pentathlon Video 1

SciVee(2009)10.4016/14074.05

N/A

0DataRank · unranked

0 citations

Philip E. Bourne

Changes in Scholarly Communication and the Potential Impact on Biocuration

Nature Precedings(2009)10.1038/npre.2009.3229.1

N/A

0DataRank · unranked

0 citations

Philip E. Bourne

TB-Drugome

OPAL (Open@LaTrobe) (La Trobe University)(2021)10.6084/m9.figshare.776916

Top 100%

0DataRank

Top 100%0 citations

Sarah L. Kinnings, Lei Xie, Li Xie, Kingston H. Fung, Philip E. Bourne +1 more

Structural Bioinformatics Pharm 201 UCSD Lecture 8

SciVee(2009)10.4016/13524.01

N/A

0DataRank · unranked

0 citations

Philip E. Bourne, Rik Belew

PLoS Comp. Biol. Update September 2009

SciVee(2009)10.4016/12796.05

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0DataRank · unranked

0 citations

Philip E. Bourne

Catalysis and regulation: Proteins

Current Opinion in Structural Biology(1999)10.1016/s0959-440x(99)00025-1

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0DataRank · unranked

0 citations

Jeremy H. Lakey, Philip E. Bourne, Judith Murray‐Rust, Judith Murray-Rust

Changes to NIH Grant System May Backfire

Science(2008)10.1126/science.322.5905.1187c

N/A

0DataRank · unranked

0 citations

Gavin Sherlock, John A. Gerlt, Ida Sim, Ian Paulsen, Patricia C. Babbitt +9 more

User interface management systems (UIMS) for crystallography

Crystallographic Computing 6(1993)10.1093/oso/9780198557883.003.0014

N/A

0DataRank · unranked

0 citations

Philip E. Bourne

Structural Bioinformatics Pharm 201 UCSD Lecture 16

SciVee(2009)10.4016/14677.01

N/A

0DataRank · unranked

0 citations

Philip E. Bourne

Ten simple rules for organizing a special session at a scientific conference

PLOS Computational Biology(2022)10.1371/journal.pcbi.1010395

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0DataRank · unranked

0 citations

Philip E. Bourne, Davide Chicco

Successful Funding of Proposals in the Pharmaceutical Sciences

Principles of Research Methodology and Ethics in Pharmaceutical Sciences(2024)10.1201/9781003088226-4

N/A

0DataRank · unranked

0 citations

Niranjan G. Kotla, Philip E. Bourne, Srinivasa Reddy Bonam, Namballa Hari Krishna

Template PDB file

Figshare(2013)10.6084/m9.figshare.776886

Top 100%

0DataRank

Top 100%0 citations

Yolanda Gil, Yinliang Zhang, Lei Xie, Li Xie, Sarah L. Kinnings +2 more

Structural Analysis of Polarizing Indels Argues the Root of the Tree of Life is Near the Chloroflexi

Nature Precedings(2009)10.1038/npre.2009.3290

N/A

0DataRank · unranked

0 citations

Philip E. Bourne, Ruben E. Valas

UCSD Phar201 Structural Domains in Proteins

SciVee(2011)10.4016/36527.01

N/A

0DataRank · unranked

0 citations

Philip E. Bourne

Seven Years; It's Time for a Change

PLoS Computational Biology(2012)10.1371/journal.pcbi.1002728

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0DataRank · unranked

0 citations

Philip E. Bourne

One Year of PLoS Computational Biology

PLoS Computational Biology(2006)10.1371/journal.pcbi.0020111

Top 100%

0DataRank

Top 100%0 citations

Philip E. Bourne

Protein kinase explorer

OPAL (Open@LaTrobe) (La Trobe University)(2011)10.6084/m9.figshare.23197.v1

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0DataRank · unranked

0 citations

Apostol Gramada, Oleksandr V Buzko, Qing Zhang, Philip E. Bourne, John L. Moreland

Devices, Queues, and Background Processing

UNIX for OpenVMS Users(2003)10.1016/b978-155558276-0/50007-8

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0DataRank · unranked

0 citations

Richard Holstein, Joseph McMullen, Philip E. Bourne

Systematic Analysis of KRAS-ligand Interaction Modes and Flexibilities Reveals the Binding Characteristics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.01.526731

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0DataRank · unranked

0 citations

Niraja Bohidar, Philip E. Bourne, Zheng Zhao

Web alert

Current Opinion in Structural Biology(2002)10.1016/s0959-440x(02)00342-1

N/A

0DataRank · unranked

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Judith Murray-Rust, Katrina L. Gill, Judith Murray‐Rust, Philip E. Bourne

Drug Binding site file

Figshare(2013)10.6084/m9.figshare.776878

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Science Olympiad Twin Peaks Pentathlon Video 1

SciVee(2009)10.4016/14074.09

N/A

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Philip E. Bourne

Additional file 4 of Evidence for treatment with estradiol for women with SARS-CoV-2 infection

Figshare(2020)10.6084/m9.figshare.13285070

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The United States Department of Energy and National Institutes of Health Collaboration: Medical Care Advances via Discovery in Physical Sciences

Medical Physics(2023)10.1002/mp.16252

N/A

0DataRank · unranked

3 citations

A.G. Weisenberger, Tatjana Atanasijević, Shumin Wang, George Zubal, Jeffrey C. Buchsbaum +17 more

DIGITAL CONNECTIVITY AND MIGRATION DYNAMICS: THE INFLUENCE OF SOCIAL MEDIA USE ON NET MIGRATION IN JAMAICA, 1970–2024

International Journal of Social Sciences and Management Review(2025)10.37602/ijssmr.2025.8523

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Philip E. Bourne

Drivers of Change: Emergent Information and Biotechnologies

Pharmacy Informatics(2009)10.1201/9781420071764-8

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Philip E. Bourne, Howard Asher

Homology Model list

Figshare(2013)10.6084/m9.figshare.776880

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Free access to publicly funded databases is vital

Nature(2003)10.1038/421786b

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Philip E. Bourne

Scaffolding of atypical protein kinase C to p62 is disrupted by the pseudosubstrate peptide ZIP (802.4)

The FASEB Journal(2014)10.1096/fasebj.28.1_supplement.802.4

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Lei Xie, Li Xie, Philip E. Bourne, Alexandra C. Newton, Li‐Chun Tsai

High performance computational biology-past progress and future promise

(2004)10.1109/csb.2003.1227289

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Philip E. Bourne

Web alert

Current Opinion in Structural Biology(2000)10.1016/s0959-440x(00)00103-2

N/A

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0 citations

Judith Murray-Rust, Jeremy H. Lakey, Judith Murray‐Rust, Philip E. Bourne

SOCIAL MEDIA CONTENT CREATORS IN JAMAICA AND VIOLENCE: A CRITICAL EXAMINATION

International Journal of Social Sciences and Management Review(2025)10.37602/ijssmr.2025.8512

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Philip E. Bourne

Structural Bioinformatics Pharm 201 UCSD Lecture 15

SciVee(2009)10.4016/14676.01

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Philip E. Bourne

Peer Review #2 of "Data-driven classification of the certainty of scholarly assertions (v0.1)"

(2020)10.7287/peerj.8871v0.1/reviews/2

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0 citations

Helena Deus, Anita de Waard, Erik Anthony Schultes, Beatriz García-Jiménez, Mark D D. Wilkinson +220 more

Combating Chagas Disease Through Inhibition of Tiam1, a Rho GTPase Guanine Nucleotide Exchange Factor

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/040121

N/A

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Li Xie, Celine DerMarderossian, Philip E. Bourne, Chirag Krishna

Ten Simple Rules for Getting Published

SciVee(2007)10.4016/1049.01

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Philip E. Bourne

Explainable Deep Generative Models, Ancestral Fragments, and Murky Regions of the Protein Structure Universe

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.16.516787

N/A

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Cameron Mura, Philip E. Bourne, Eli J. Draizen

A Review of 2009 for PLoS Computational Biology

PLoS Computational Biology(2010)10.1371/journal.pcbi.1000687

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Cecy Marden, Catherine Nancarrow, Philip E. Bourne, Rosemary Dickin

INTRODUCTION TO INFORMATICS APPLICATIONS IN STRUCTURAL GENOMICS

Biocomputing 2004(2003)10.1142/9789812704856_0035

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Sean D. Mooney, Philip E. Bourne, Patricia C. Babbitt

X-ray crystallographic analysis of horse spleen apoferritin

Acta Crystallographica Section A Foundations of Crystallography(1981)10.1107/s0108767381099169

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0 citations

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Contra-Analysis for Determining Negligible Effect Size in Scientific Research

arXiv (Cornell University)(2023)10.48550/arxiv.2303.09428

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Yaotian Wang, Heman Shakeri, Philip E. Bourne, Bruce A. Corliss

Introduction

UNIX for OpenVMS Users(2003)10.1016/b978-155558276-0/50001-7

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Richard Holstein, Joseph McMullen, Philip E. Bourne

Science Olympiad - Pentathlon - CO2 Experiment Part II

SciVee(2009)10.4016/14793.03

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0 citations

Philip E. Bourne

Primary Protein and Nucleic Acid Three‐dimensional Structure Databases

Encyclopedia of Life Sciences(2002)10.1038/npg.els.0003030

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Philip E. Bourne

random slide set

SciVee(2009)10.4016/10650.01

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Philip E. Bourne

ICMLA 2008 Invited Speakers

2008 Seventh International Conference on Machine Learning and Applications(2008)10.1109/icmla.2008.151

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Jude Shavlik, Michael I. Jordan, Bin Yu, Andrew Moore, Andrew W. Moore +2 more

Science Olympiad - Pentathlon - CO2 Experiment Part II

SciVee(2009)10.4016/14793.01

N/A

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Philip E. Bourne

Introductory File Management

UNIX for OpenVMS Users(2003)10.1016/b978-155558276-0/50004-2

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Richard Holstein, Joseph McMullen, Philip E. Bourne

Die FAIR-Prinzipien für das wissenschaftliche Datenmanagement und Data Stewardship

Zenodo (CERN European Organization for Nuclear Research)(2016)10.5281/zenodo.6247015

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0 citations

Michel J. Dumontier, IJsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak +48 more

RECONCEPTUALISING AUDIENCE IN ACADEMIC SCHOLARSHIP: NAVIGATING THE COMPLEXITIES OF SCHOLARLY COMMUNICATION AND INTENDED READERSHIP

International Journal of Social Sciences and Management Review(2025)10.37602/ijssmr.2025.8425

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Philip E. Bourne

Prop3D-20

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.6873023

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Cameron Mura, Philip E. Bourne, Eli J. Draizen

DEMOGRAPHIC AND EPIDEMIOLOGICAL TRANSITIONS OF RAPE AND SUICIDE IN JAMAICA, 1970–2024: A LONGITUDINAL STUDY OF SOCIAL, ECONOMIC, AND PUBLIC HEALTH DETERMINANTS

International Journal of Social Sciences and Management Review(2025)10.37602/ijssmr.2025.8524

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Philip E. Bourne

Additional file 7 of Evidence for treatment with estradiol for women with SARS-CoV-2 infection

Figshare(2020)10.6084/m9.figshare.13285079

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Flaminia Coluzzi, Maurizio Simmaco, Cameron Mura, Philip E. Bourne, Max Heiland +3 more

Additional file 2 of Evidence for treatment with estradiol for women with SARS-CoV-2 infection

Figshare(2020)10.6084/m9.figshare.13285064

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Flaminia Coluzzi, Maurizio Simmaco, Cameron Mura, Philip E. Bourne, Max Heiland +3 more

Correction: Ten Simple Rules for Selecting a Postdoctoral Position

PLoS Computational Biology(2006)10.1371/journal.pcbi.0020181

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Iddo Friedberg, Philip E. Bourne

Prop3D-20

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.6873024

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Additional file 11 of Evidence for treatment with estradiol for women with SARS-CoV-2 infection

Figshare(2020)10.6084/m9.figshare.13285058

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Flaminia Coluzzi, Maurizio Simmaco, Cameron Mura, Philip E. Bourne, Max Heiland +3 more

Science Olympiad Twin Peaks Pentathlon Video 1

SciVee(2009)10.4016/14074.01

N/A

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Philip E. Bourne

UCSD Phar201 Structural Aspects of Protein Protein Interactions

SciVee(2011)10.4016/36524.01

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Philip E. Bourne

Highly connected drug file

Figshare(2013)10.6084/m9.figshare.776887

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Lei Xie, Yinliang Zhang, Yolanda Gil, Li Xie, Sarah L. Kinnings +2 more

Protein Data Resources

Encyclopedia of Biological Chemistry(2004)10.1016/b0-12-443710-9/00539-1

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Philip E. Bourne

The benefits of open research: How sharing can help researchers succeed

Figshare(2016)10.6084/m9.figshare.1619902.v3

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Philip E. Bourne, C. Titus Brown, Stuart Buck, Amye Kenall, Jennifer Lin +10 more

A Review of 2011 for PLoS Computational Biology

PLoS Computational Biology(2012)10.1371/journal.pcbi.1002387

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Chris James Hall, Laura K. Taylor, Ruth Nussinov, Philip E. Bourne, Andy Collings +1 more

DIGITAL INFLUENCE ON MARITAL STABILITY: A TIME-SERIES ANALYSIS OF SOCIAL MEDIA USE AND DIVORCE IN JAMAICA, 2005–2024

International Journal of Social Sciences and Management Review(2025)10.37602/ijssmr.2025.8522

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Philip E. Bourne

Additional File 3: Database S1:

Figshare(2016)10.6084/m9.figshare.c.3634922_d3

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Nathan Mih, Jonathan M. Monk, Zhen Zhang, Edward OâBrien, Spencer E. Bliven +5 more

A Systematic Approach to Identifying Protein-Ligand Binding Profiles on a Proteome Scale

Nature Precedings(2008)10.1038/npre.2008.2207

N/A

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Li Xie, Nancy Buchmeier, N A Buchmeier, Philip E. Bourne, Lei Xie

Structural Bioinformatics Pharm 201 UCSD Lecture 3

SciVee(2009)10.4016/13079.01

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Philip E. Bourne

Using the structural kinome to systematize kinase drug discovery

arXiv (Cornell University)(2021)10.48550/arxiv.2104.13146

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Philip E. Bourne, Zheng Zhao

Web Alert: Biophysical methods

Current Opinion in Structural Biology(2001)10.1016/s0959-440x(00)00241-4

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Philip E. Bourne, Judith Murray-Rust, Judith Murray‐Rust, Jeremy H. Lakey

Supplemental Material for 'Deep Generative Models of Protein Structure Uncover Distant Relationships Across a Continuous Fold Space' and DeepUrfold

Zenodo (CERN European Organization for Nuclear Research)(2024)10.5281/zenodo.6916523

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Stella Veretnik, Cameron Mura, Philip E. Bourne, Eli J. Draizen

A Review of 2008 for PLoS Computational Biology

PLoS Computational Biology(2009)10.1371/journal.pcbi.1000275

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Rosemary Dickin, Philip E. Bourne, Evie Browne

Wiggle—Predicting Functionally Flexible Regions from Primary Sequence

SciVee(2007)10.4016/55.01

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0 citations

Michael Gribskov, Philip E. Bourne, Jenny Gu

Structural Bioinformatics Pharm 201 UCSD Lecture 4

SciVee(2009)10.4016/13334.01

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0 citations

Philip E. Bourne

SMAP configuration file

Figshare(2013)10.6084/m9.figshare.776882

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Sarah L. Kinnings, Philip E. Bourne, Lei Xie, Li Xie, Yolanda Gil +2 more

Additional file 5 of Evidence for treatment with estradiol for women with SARS-CoV-2 infection

Figshare(2020)10.6084/m9.figshare.13285073

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Flaminia Coluzzi, Maurizio Simmaco, Cameron Mura, Philip E. Bourne, Max Heiland +3 more

Peer Review Report For: BioJS: an open source standard for biological visualisation – its status in 2014 [version 1; peer review: 2 approved]

Faculty of 1000 Research Ltd(2014)10.5256/f1000research.3850.r3819

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Philip E. Bourne

Science Olympiad - Pentathlon - CO2 Experiment Part I

SciVee(2009)10.4016/14792.03

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Philip E. Bourne

Ten Simple Rules for Serving as an Editor

DOAJ (DOAJ: Directory of Open Access Journals)(2022)10.31235/osf.io/2xkev

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0 citations

Philip E. Bourne, Cameron Mura

Science Olympiad - Pentathlon - CO2 Experiment Part I

SciVee(2009)10.4016/14792.07

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0 citations

Philip E. Bourne

Data Science @ the NIH: What is Happening & What is Coming: A Conversation

University of Massachusetts (UMass) Chan Medical School(2019)10.13028/wj7e-1r18

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0 citations

Philip E. Bourne

Structural Bioinformatics Pharm 201 UCSD Lecture 14

SciVee(2009)10.4016/14515.01

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Philip E. Bourne

Pharmaceutical Sciences in a Virtual World

Pharmacy Informatics(2009)10.1201/9781420071764-27

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Philip E. Bourne

Open Access: Taking Full Advantage of the Content

SciVee(2010)10.4016/17312.01

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J. Fink, Grigorios Georgolopoulos, Philip E. Bourne

SPPS205-2012 Quality and Cost Effectiveness Part I

SciVee(2012)10.4016/48346.01

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Philip E. Bourne

Playing catch-up in building an open research commons

arXiv (Cornell University)(2022)10.48550/arxiv.2208.04682

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Vivien R. Bonazzi, Amy Brand, Bonnie Carroll, Ian Foster, Ramanathan V. Guha +10 more

Open Data Driving Scholarly Communication in 2020

SciVee(2011)10.4016/37291.01

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Philip E. Bourne

SSPPS205 2012 Informatics in Drug Discovery

SciVee(2012)10.4016/48344.01

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Philip E. Bourne

Rigid Scaffolds are Promising for Designing Macrocyclic Kinase Inhibitors

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.17.533119

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Philip E. Bourne, Zheng Zhao

Structural Bioinformatics Pharm 201 UCSD Lecture 10

SciVee(2009)10.4016/13870.01

N/A

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0 citations

Philip E. Bourne

Science Olympiad Twin Peaks Pentathlon Video 1

SciVee(2009)10.4016/14074.07

N/A

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0 citations

Philip E. Bourne

Biochemical and structural characterization of a reactive intermediate deaminase A homolog from Streptococcus sanguinis

Scientific Reports(2025)10.1038/s41598-025-05264-x

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Adreana I. Aquino, Brandi A. Buckner, Swarmistha Devi Aribam, Chhandosee Ganguly, Leonard M. Thomas +6 more

Techniques for Modeling the Electrostatic Field of Large Biomolecules

Biophysical Journal(2010)10.1016/j.bpj.2009.12.2099

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Philip E. Bourne, Apostol Gramada

Inter-subunit interactions and metal binding sites in horse spleen apoferritin

Acta Crystallographica Section A Foundations of Crystallography(1981)10.1107/s0108767381098826

N/A

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0 citations

George A. Clegg, P. M. Harrison, J. M. A. Smith, Philip E. Bourne, John M. Smith +1 more

Structural Bioinformatics Pharm 201 UCSD Lecture 16

SciVee(2009)10.4016/14677.03

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0 citations

Philip E. Bourne

Index

Methods of Biochemical Analysis(2003)10.1002/0471721204.index

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0 citations

Helge Weissig, Philip E. Bourne

Science Olympiad - Pentathlon - CO2 Experiment Part I

SciVee(2009)10.4016/14792.01

N/A

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0 citations

Philip E. Bourne

Pre-calculated protein structure alignments at the RCSB PDB website: Fig. 1.

UNC Libraries(2020)10.17615/59hg-9047

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0 citations

Spencer E. Bliven, Peter W. Rose, Wolfgang F. Bluhm, Chris Bizon, Adam Godzik +2 more

Ten Simple Rules for Starting Research in Your Late Teens

SocArXiv (OSF Preprints)(2020)10.31235/osf.io/c7uh8

N/A

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0 citations

Mike Chalupa, Abigail M. Newbury, Jack Chalupa, Philip E. Bourne, Cameron Mura

A Systematic Approach to Identifying Protein-Ligand Binding Profiles on a Proteome Scale

Nature Precedings(2008)10.1038/npre.2008.2207.1

N/A

0DataRank · unranked

0 citations

Nancy Buchmeier, Lei Xie, N A Buchmeier, Philip E. Bourne, Li Xie

The Urfold : Structural Similarity Just above the Superfold Level?

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/728030

N/A

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Stella Veretnik, Philip E. Bourne, Cameron Mura

Science Olympiad - Pentathlon - CO2 Experiment Part I

SciVee(2009)10.4016/14792.05

N/A

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0 citations

Philip E. Bourne

Visualization of highly connected drugs

Figshare(2013)10.6084/m9.figshare.776889

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Yinliang Zhang, Yolanda Gil, Li Xie, Sarah L. Kinnings, Philip E. Bourne +3 more

SOCIAL MEDIA, VULGARITY, AND MENTAL HEALTH IN JAMAICA: EXAMINING THE CULTURAL AND PSYCHOLOGICAL IMPLICATIONS OF DIGITAL CONTENT CREATION

International Journal of Social Sciences and Management Review(2025)10.37602/ijssmr.2025.8511

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0 citations

Philip E. Bourne

The International Society for Computational Biology 10th Anniversary

PLoS Computational Biology(2007)10.1371/journal.pcbi.0030135

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0 citations

Russ B. Altman, Philip E. Bourne, Lawrence E. Hunter

Carbohydrates and glycoconjugates Biophysical methods Web alert

Current Opinion in Structural Biology(1998)10.1016/s0959-440x(98)80141-3

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0 citations

Philip E. Bourne, Judith Murray-Rust, Judith Murray‐Rust, Jeremy H. Lakey

Protein–nucleic acid interactions

Current Opinion in Structural Biology(2002)10.1016/s0959-440x(02)00280-4

N/A

0DataRank · unranked

0 citations

Judith Murray-Rust, Katrina L. Gill, Judith Murray‐Rust, Philip E. Bourne

Ten simple rules for serving as an editor

PLOS Computational Biology(2023)10.1371/journal.pcbi.1010911

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0 citations

Philip E. Bourne, Cameron Mura

SPPS205 Pharmacy Informatics Lecture 2: Computer Basics

SciVee(2012)10.4016/46916.01

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0 citations

Philip E. Bourne

Science Olympiad Twin Peaks Pentathlon Video 1

SciVee(2009)10.4016/14074.03

N/A

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0 citations

Philip E. Bourne

Developing Computational Biology

PLoS Computational Biology(2007)10.1371/journal.pcbi.0030157

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0DataRank · unranked

0 citations

Steven E. Brenner, Philip E. Bourne

Computer and Informatics Basics

Pharmacy Informatics(2009)10.1201/9781420071764-c3

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0 citations

Philip E. Bourne

Structural Bioinformatics Pharm 201 UCSD Lecture 17

SciVee(2009)10.4016/14817.01

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0 citations

Philip E. Bourne

PLoS Comp. Biol. Update September 2009

SciVee(2009)10.4016/12796.03

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Philip E. Bourne

Desktop crystallography – the next generation of computers

Acta Crystallographica Section A Foundations of Crystallography(1987)10.1107/s0108767387077626

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Philip E. Bourne

Deciphering Covalent Kinase Inhibitor Binding Landscape through Structural Kinome Profiling

SSRN Electronic Journal(2025)10.2139/ssrn.5928614

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Philip E. Bourne, Zheng Zhao

File Management Revisited

UNIX for OpenVMS Users(2003)10.1016/b978-155558276-0/50008-x

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0 citations

Richard Holstein, Joseph McMullen, Philip E. Bourne

Structural Bioinformatics Pharm 201 UCSD Lecture 7

SciVee(2009)10.4016/13410.01

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0 citations

Philip E. Bourne

Science 's Policy on Data Deposition

Science(2002)10.1126/science.296.5573.1609b

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Philip E. Bourne

Additional File 2: Database S2:

Figshare(2016)10.6084/m9.figshare.c.3634922_d2

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Nathan Mih, Jonathan M. Monk, Zhen Zhang, Edward OâBrien, Spencer E. Bliven +5 more

Solved structures list

Figshare(2013)10.6084/m9.figshare.776884

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Philip E. Bourne, Lei Xie, Yinliang Zhang, Yolanda Gil, Li Xie +2 more

Networking

UNIX for OpenVMS Users(2003)10.1016/b978-155558276-0/50013-3

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Richard Holstein, Joseph McMullen, Philip E. Bourne

PLoS Comp. Biol. Update September 2009

SciVee(2009)10.4016/12796.07

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Philip E. Bourne

Programming

UNIX for OpenVMS Users(2003)10.1016/b978-155558276-0/50009-1

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Richard Holstein, Joseph McMullen, Philip E. Bourne

Additional file 3 of Evidence for treatment with estradiol for women with SARS-CoV-2 infection

Figshare(2020)10.6084/m9.figshare.13285067

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Flaminia Coluzzi, Maurizio Simmaco, Cameron Mura, Philip E. Bourne, Max Heiland +3 more

From biomedical cloud platforms to microservices: next steps in FAIR data and analysis

Open MIND(2022)10.31219/osf.io/tx5rk

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2 citations

Viven Bonazzi, Philip E. Bourne, Tony Burdett, Timothy Clark, Robert L. Grossman +3 more

Structural Genomics

Bioinformatics‐From Genomes to Therapies(2007)10.1002/9783527619368.ch13

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Adam Godzik, Philip E. Bourne

Homology model file

Figshare(2013)10.6084/m9.figshare.776883

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Sarah L. Kinnings, Philip E. Bourne, Lei Xie, Li Xie, Yolanda Gil +2 more

PLoS Comp. Biol. Update September 2009

SciVee(2009)10.4016/12796.01

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Philip E. Bourne

Philip E. Bourne

Indexed papers

Top data-sharing exemplar

Papers