Julia Yue Cui

Biochemistry, Genetics and Molecular BiologyMedicinePharmacology, Toxicology and PharmaceuticsEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 35 papers. Top paper: “Targeting the pregnane X receptor using microbial metabolite mimicry”.

Targeting the pregnane X receptor using microbial metabolite mimicry

EMBO Molecular Medicine(2020)10.15252/emmm.201911621

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82 citations

Felix Kopp, Cait M. Costello, Jazmin S. Kemp, Hao Li, Aneta Vrzalová +37 more

Transplacental arsenic exposure produced 5-methylcytosine methylation changes and aberrant microRNA expressions in livers of male fetal mice

Toxicology(2020)10.1016/j.tox.2020.152409

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21 citations

Sumedha Gunewardena, Julia Yue Cui, Curtis D. Klaassen, Brian N. Chorley, J. Christopher Corton +1 more

Impact of Microbiome on Hepatic Metabolizing Enzymes and Transporters in Mice during Pregnancy

Drug Metabolism and Disposition(2020)10.1124/dmd.120.000039

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13 citations

Lu Wang, Yuanyuan Shi, Joseph L. Dempsey, Olesya Pershutkina, Moumita Dutta +4 more

Transcriptomic profiling of PBDE-exposed HepaRG cells unveils critical lncRNA- PCG pairs involved in intermediary metabolism

PLoS ONE(2020)10.1371/journal.pone.0224644

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13 citations

Cindy Yanfei Li, Edward J. Kelly, Lianne Sheppard, Julia Yue Cui, Angela Zhang

Gut Microbiome Critically Impacts PCB-induced Changes in Metabolic Fingerprints and the Hepatic Transcriptome in Mice

Toxicological Sciences(2020)10.1093/toxsci/kfaa090

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41 citations

Xueshu Li, Hans‐Joachim Lehmler, Dongfang Wang, Haiwei Gu, Julia Yue Cui +1 more

Early Life Exposure to Environmental Contaminants (BDE-47, TBBPA, and BPS) Produced Persistent Alterations in Fecal Microbiome in Adult Male Mice

Toxicological Sciences(2020)10.1093/toxsci/kfaa161

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40 citations

Moumita Dutta, Alexander Suvorov, Xiaojian Shi, Haiwei Gu, Sridhar Mani +2 more

Sex-, Age-, and Race/Ethnicity-Dependent Variations in Drug-Processing and NRF2-Regulated Genes in Human Livers

Drug Metabolism and Disposition(2020)10.1124/dmd.120.000181

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24 citations

Julia Yue Cui, Yuan‐Fu Lu, J. Christopher Corton, Curtis D. Klaassen, Jie Liu

Understanding the Physiological Functions of the Host Xenobiotic-sensing Nuclear Receptors PXR and CAR on the Gut Microbiome using Genetically Modified Mice

(2020)10.21203/rs.3.rs-36593/v1

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3 citations

Moumita Dutta, Hao Li, Adam Matson, Xiaojian Shi, Haiwei Gu +3 more

Pregnane X receptor exacerbates nonalcoholic fatty liver disease accompanied by obesity- and inflammation-prone gut microbiome signature

Biochemical Pharmacology(2021)10.1016/j.bcp.2021.114698

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51 citations

Sora Choi, Moumita Dutta, Jeffrey O. Asubonteng, Marianne Polunas, Michael Goedken +4 more

Microbiome-encoded bile acid metabolism modulates colonic transit times

iScience(2021)10.1016/j.isci.2021.102508

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48 citations

Sean T. Koester, Daniel M. Lachance, Moumita Dutta, Julia Yue Cui, Neelendu Dey +1 more

Pregnane X Receptor and the Gut-Liver Axis: A Recent Update

Drug Metabolism and Disposition(2021)10.1124/dmd.121.000415

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39 citations

Joe Jongpyo Lim, Julia Yue Cui, Moumita Dutta

Cadmium exposure modulates the gut-liver axis in an Alzheimer’s disease mouse model

Communications Biology(2021)10.1038/s42003-021-02898-1

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28 citations

Megumi Matsushita, Liang Zhang, Hao Wang, Xiaojian Shi, Haiwei Gu +3 more

Neonatal Exposure to BPA, BDE-99, and PCB Produces Persistent Changes in Hepatic Transcriptome Associated With Gut Dysbiosis in Adult Mouse Livers

Toxicological Sciences(2021)10.1093/toxsci/kfab104

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23 citations

Moumita Dutta, Joseph L. Dempsey, Hans‐Joachim Lehmler, James W. MacDonald, Theo K. Bammler +6 more

Chronic exposure to ambient traffic-related air pollution (TRAP) alters gut microbial abundance and bile acid metabolism in a transgenic rat model of Alzheimer’s disease

Toxicology Reports(2022)10.1016/j.toxrep.2022.03.003

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19 citations

Kris M. Weigel, Kelley T. Patten, Anthony E. Valenzuela, Christopher Wallis, Keith J. Bein +4 more

Maternal PBDE exposure disrupts gut microbiome and promotes hepatic proinflammatory signaling in humanized PXR-transgenic mouse offspring over time

Toxicological Sciences(2023)10.1093/toxsci/kfad056

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21 citations

Hao Li, Yan Jin, Jasmine Armad, Haiwei Gu, Sridhar Mani +2 more

In Vivo Tissue Distribution of Microplastics and Systemic Metabolomic Alterations After Gastrointestinal Exposure

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.02.542598

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18 citations

Aaron S. Romero, Seth D. Merkley, Jewel L. Meyer-Hagen, Charles D. Forbes, Eliane El Hayek +16 more

Deciphering the Zonal Distribution of Hepatic Drug Metabolizing Enzymes and Transporters in Mice by Single Cell Transcriptomics

Journal of Pharmacology and Experimental Therapeutics(2023)10.1124/jpet.122.161490

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0 citations

Curtis D. Klaassen, Julia Yue Cui, Joe Jongpyo Lim

The microbiome/microbiota and the neurotoxicity of polybrominated diphenyl ether (PBDE) flame retardants

Advances in neurotoxicology(2023)10.1016/bs.ant.2023.06.002

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0 citations

Julia Yue Cui, Lucio G. Costa, Hao Wang

In Vivo Tissue Distribution of Polystyrene or Mixed Polymer Microspheres and Metabolomic Analysis after Oral Exposure in Mice

Environmental Health Perspectives(2024)10.1289/ehp13435

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88 citations

Aaron S. Romero, Seth D. Merkley, Jewel L. Meyer-Hagen, Charles D. Forbes, Eliane El Hayek +16 more

Significant metabolic alterations in mouse dams exposed to an environmental mixture of polychlorinated biphenyls (PCBs) during gestation and lactation: Insights into PCB and metabolite profiles

Environmental Toxicology and Pharmacology(2024)10.1016/j.etap.2024.104567

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7 citations

Youjun Suh, Rebecca J. Wilson, Pamela J. Lein, Julia Yue Cui, Hans‐Joachim Lehmler +1 more

Single-cell transcriptomics unveiled that early life BDE-99 exposure reprogrammed the gut-liver axis to promote a proinflammatory metabolic signature in male mice at late adulthood

Toxicological Sciences(2024)10.1093/toxsci/kfae047

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6 citations

Michael Goedken, Yan Jin, Haiwei Gu, Julia Yue Cui, Joe Jongpyo Lim

Molecular targets of PXR-dependent ethanol-induced hepatotoxicity in female mice

Biochemical Pharmacology(2024)10.1016/j.bcp.2024.116416

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6 citations

Malvin Ofosu‐Boateng, Sarah Kim, Daniel Okwudili Nnamani, Mia Mahmoud, Prince Neequaye +6 more

Oral exposure to benzalkonium chlorides in male and female mice reveals alteration of the gut microbiome and bile acid profile

Toxicological Sciences(2024)10.1093/toxsci/kfae116

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3 citations

Joe L Lim, Ryan P. Seguin, Joseph L. Dempsey, Gabrielle Kunzman, Julia Yue Cui +2 more

Germ-free status but not subacute polychlorinated biphenyl (PCB) exposure altered hepatic phosphatidylcholine and ether-phosphatidylcholine levels in mice

Toxicology(2024)10.1016/j.tox.2024.153790

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3 citations

Hui Wang, Amanda J. Bullert, Julia Yue Cui, Kai Wang, Hans‐Joachim Lehmler +1 more

Deciphering the cell type-specific and zonal distribution of drug-metabolizing enzymes, transporters, and transcription factors in livers of mice using single-cell transcriptomics

Drug Metabolism and Disposition(2024)10.1016/j.dmd.2024.100029

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3 citations

Curtis D. Klaassen, Julia Yue Cui, Joe Jongpyo Lim

Cadmium-induced gut dysbiosis precedes the onset of hippocampus-dependent learning and memory deficits in mice

Toxicology(2025)10.1016/j.tox.2025.154265

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6 citations

Joe Jongpyo Lim, Haiwei Gu, Zhengui Xia, Julia Yue Cui, Hao Wang

Metabolic Reprogramming in Gut Microbiota Exposed to Polystyrene Microplastics

Biomedicines(2025)10.3390/biomedicines13020446

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11 citations

Jeffrey S. Patterson, Yan Jin, Kyle Joohyung Kim, Nicole Lalime, Daniella Hawley +7 more

In vivo exposure of mixed microplastic particles in mice and its impacts on the murine gut microbiome and metabolome

Toxicological Sciences(2025)10.1093/toxsci/kfaf145

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2 citations

Marcus Garcia, Aaron S. Romero, Yan Jin, Jinhua Chi, Matthew J. Campen +5 more

Butyrate rescues chlorpyrifos-induced social deficits through inhibition of class I histone deacetylases

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.19.683261

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3 citations

Ally Xinyi Kong, Ping Zhang, Jinhua Chi, Khoa Pham, M. S. Johnson +9 more

Cadmium-induced gut dysbiosis precedes the onset of hippocampus-dependent learning and memory deficits in mice

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.07.647608

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1 citations

Joe Jongpyo Lim, Haiwei Gu, Zhengui Xia, Julia Yue Cui, Hao Wang

In vivo exposure of mixed microplastic particles in mice and its impacts on the murine gut microbiome and metabolome

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.15.664901

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1 citations

Marcus Garcia, Aaron S. Romero, Yan Jin, Jinhua Chi, Matthew J. Campen +5 more

Deconjugation of Polychlorinated Biphenyl Sulfates to Hydroxylated PCBs by Anaerobically Cultured Mouse and Human Gut Microbiota

ChemRxiv(2025)10.26434/chemrxiv-2025-f0lwx

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0 citations

Joe Jongpyo Lim, Cayen Rong, Hans‐Joachim Lehmler, Julia Yue Cui, Xueshu Li

Single-cell transcriptomics showed that maternal PCB exposure dysregulated ER stress-mediated cell type-specific responses in the liver of female offspring

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.04.657944

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0 citations

Youjun Suh, Xueshu Li, Rebecca J. Wilson, Hans‐Joachim Lehmler, Pamela J. Lein +2 more

Human PXR Signaling Exacerbates Ethanol-induced Liver Injury in Females: Evidence From Mouse Models and Human Alcohol-associated Liver Disease Cohorts

Cellular and Molecular Gastroenterology and Hepatology(2025)10.1016/j.jcmgh.2025.101589

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0 citations

Sora Choi, Sarah Kim, Elizabeth Twum, Daniel Okwudili Nnamani, Lidya H Gebreyesus +8 more

Single-cell transcriptomics showed that maternal polychlorinated biphenyl exposure dysregulated cell type-specific metabolic responses in the livers of female mouse offsprings

Drug Metabolism and Disposition(2025)10.1016/j.dmd.2025.100174

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0 citations

Youjun Suh, Xueshu Li, R. Wilson, Hans‐Joachim Lehmler, Pamela J. Lein +2 more