Simon Heumos

University of California, Santa Cruz

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

8.6Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x

Top 4%

5.1DataRank

Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Papers

Driven by 19 papers — median percentile 71. Top paper: “A draft human pangenome reference”.

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x

Top 4%

5.1DataRank

Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Pangenome graph construction from genome alignments with Minigraph-Cactus

Nature Biotechnology(2023)10.1038/s41587-023-01793-w

N/A

5.0DataRank · unranked

318 citations

Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao +94 more

ODGI: understanding pangenome graphs

Bioinformatics(2022)10.1093/bioinformatics/btac308

N/A

3.8DataRank · unranked

211 citations

Simon Heumos, Sven Nahnsen, Pjotr Prins, Erik Garrison, Andrea Guarracino

A Draft Human Pangenome Reference

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.09.499321

Top 8%

2.9DataRank

Top 8%74 citations

Mobin Asri, Daniel Doerr, Eoghan Harrington, Hickey, Glenn, Julian K. Lucas +47 more

Increased mutation and gene conversion within human segmental duplications

Nature(2023)10.1038/s41586-023-05895-y

N/A

2.1DataRank · unranked

114 citations

Philip C. Dishuck, William T. Harvey, William S. DeWitt, Xavi Guitart, Michael E. Goldberg +108 more

Pangenome Graphs

Annual Review of Genomics and Human Genetics(2020)10.1146/annurev-genom-120219-080406

N/A

0.882DataRank · unranked

356 citations

Adam M. Novak, Jonas A. Sibbesen, Simon Heumos, Ali Ghaffaari, Hickey, Glenn +11 more

Building pangenome graphs

Nature Methods(2024)10.1038/s41592-024-02430-3

N/A

0.768DataRank · unranked

166 citations

Andrea Guarracino, Simon Heumos, Flavia Villani, Zhigui Bao, Lorenzo Tattini +25 more

Building pangenome graphs

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.05.535718

N/A

0.718DataRank · unranked

119 citations

Andrea Guarracino, Simon Heumos, Flavia Villani, Zhigui Bao, Lorenzo Tattini +25 more

Recombination between heterologous human acrocentric chromosomes

Nature(2023)10.1038/s41586-023-05976-y

N/A

0.710DataRank · unranked

113 citations

Silvia Buonaiuto, Leonardo Gomes de Lima, Tamara Potapova, Arang Rhie, Sergey Koren +106 more

Efficient dynamic variation graphs

Bioinformatics(2020)10.1093/bioinformatics/btaa640

N/A

0.550DataRank · unranked

38 citations

Adam M. Novak, Emily Kobayashi, Flavia Villani, Cecilia Cisar, Simon Heumos +5 more

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100543

Top 50%

0.352DataRank

Top 50%6 citations

Stephanie Greer, Dmitri S. Pavlichin, Bo Zhou, Alexander E. Urban, Tsachy Weissman +94 more

Pangenome graph layout by Path-Guided Stochastic Gradient Descent

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.22.558964

N/A

0.269DataRank · unranked

5 citations

Andrea Guarracino, Jan-Niklas Schmelzle, Jiajie Li, Zhiru Zhang, Jörg Hagmann +4 more

Using the linear references from the pangenome to discover missing autism variants

Nature Communications(2026)10.1038/s41467-026-68378-4

Top 65%

0.208DataRank

Top 65%3 citations

Jiadong Lin, Michelle D. Noyes, Young-Jun Kwon, Isaac Wong, Nidhi Koundinya +252 more

nf-core/airrflow: an adaptive immune receptor repertoire analysis workflow employing the Immcantation framework

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.18.576147

N/A

0.165DataRank · unranked

2 citations

Susanna Marquez, Robert Bjornson, Alexander Peltzer, Hailong Meng, E Aron +11 more

Succinct dynamic variation graphs

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.23.056317

N/A

0DataRank · unranked

4 citations

Adam M. Novak, Emily Kobayashi, Flavia Villani, Cecilia Cisar, Simon Heumos +5 more

Specific Induction of Double Negative B Cells During Protective and Pathogenic Immune Responses

Frontiers in Immunology(2020)10.3389/fimmu.2020.606338

N/A

0DataRank · unranked

58 citations

Gisela Gabernet, Gildas Lepennetier, Simon Heumos, Miriam Kaminski, Zsuzsanna Hracskó +9 more

nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework

PLoS Computational Biology(2024)10.1371/journal.pcbi.1012265

N/A

0DataRank · unranked

19 citations

Susanna Marquez, Robert Bjornson, Alexander Peltzer, Hailong Meng, E Aron +12 more

Pangenome graph layout by Path-Guided Stochastic Gradient Descent

Bioinformatics(2024)10.1093/bioinformatics/btae363

N/A

0DataRank · unranked

9 citations

Andrea Guarracino, Jan-Niklas Schmelzle, Jiajie Li, Zhiru Zhang, Jörg Hagmann +4 more

nf-core/airrflow: an adaptive immune receptor repertoire analysis workflow employing the Immcantation framework 9075

The Journal of Immunology(2025)10.1093/jimmun/vkaf283.2527

N/A

0DataRank · unranked

0 citations

Susanna Marquez, Robert Bjornson, Alexander Peltzer, Hailong Meng, E Aron +11 more

Simon Heumos

Indexed papers

Top data-sharing exemplar

Papers