Atul Janardhan Butte

Also affiliated with Clinical Insights, UCSF Helen Diller Family Comprehensive Cancer Center, University of San Francisco

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

94.6Author DataRank

Indexed papers

59in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 59 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Creation and implications of a phenome-genome network

Nature Biotechnology(2006)10.1038/nbt1150

Top 2%

9.3DataRank

Top 2%207 citations

Isaac S. Kohane, Atul Janardhan Butte

Papers

Driven by 519 papers — median percentile 55. Top paper: “In silico research in the era of cloud computing”.

In silico research in the era of cloud computing

Nature Biotechnology(2010)10.1038/nbt1110-1181

N/A

9.8DataRank · unranked

129 citations

Atul Janardhan Butte, Joel T. Dudley

Creation and implications of a phenome-genome network

Nature Biotechnology(2006)10.1038/nbt1150

Top 2%

9.3DataRank

Top 2%207 citations

Isaac S. Kohane, Atul Janardhan Butte

ImmPort: disseminating data to the public for the future of immunology

Immunologic Research(2014)10.1007/s12026-014-8516-1

Top 2%

9.1DataRank

Top 2%901 citations

Sandra Andorf, Linda Gomes, Patrick Dunn, Henry Schaefer, Joan Pontius +13 more

AILUN: reannotating gene expression data automatically

Nature Methods(2007)10.1038/nmeth1107-879

N/A

8.7DataRank · unranked

172 citations

Li Li, Atul Janardhan Butte, Rong Chen

Opportunities and challenges in using real-world data for health care

Journal of Clinical Investigation(2020)10.1172/jci129197

N/A

8.5DataRank · unranked

179 citations

Atul Janardhan Butte, Vivek Ashok Rudrapatna

Ontology-driven indexing of public datasets for translational bioinformatics

BMC Bioinformatics(2009)10.1186/1471-2105-10-s2-s1

Top 2%

8.5DataRank

Top 2%121 citations

Clement Jonquet, Annie P Chiang, Atul Janardhan Butte, Rong Chen, Mark A. Musen +2 more

Phased Whole-Genome Genetic Risk in a Family Quartet Using a Major Allele Reference Sequence

PLoS Genetics(2011)10.1371/journal.pgen.1002280

N/A

7.5DataRank · unranked

148 citations

Rong Chen, Sergio P. Cordero, Kelly E. Ormond, Colleen Caleshu, Konrad J. Karczewski +33 more

Non-Synonymous and Synonymous Coding SNPs Show Similar Likelihood and Effect Size of Human Disease Association

PLoS ONE(2010)10.1371/journal.pone.0013574

N/A

7.3DataRank · unranked

206 citations

Abigail Woodroffe, Marina Sirota, Atul Janardhan Butte, Eugene Davydov, Rong Chen

Translational Bioinformatics: Coming of Age

Journal of the American Medical Informatics Association(2008)10.1197/jamia.m2824

N/A

7.1DataRank · unranked

131 citations

Atul Janardhan Butte

Conserved mechanisms across development and tumorigenesis revealed by a mouse development perspective of human cancers

Genes & Development(2004)10.1101/gad.1182504

N/A

6.7DataRank · unranked

167 citations

Qing Zhao, Zhaohui Cai, Atul Janardhan Butte, John Y.H. Kim, Scott L. Pomeroy +3 more

Comprehensive analysis of normal adjacent to tumor transcriptomes

Nature Communications(2017)10.1038/s41467-017-01027-z

Top 3%

6.6DataRank

Top 3%655 citations

Roman Camarda, Justin Odegaard, Hyojung Paik, Boris Oskotsky, Gregor Krings +6 more

Compendium of Immune Signatures Identifies Conserved and Species-Specific Biology in Response to Inflammation

Immunity(2016)10.1016/j.immuni.2015.12.006

Top 3%

6.4DataRank

Top 3%305 citations

Yan Tan, Arthur Liberzon, Pablo Tamayo, Sanchita Bhattacharya, Atul Janardhan Butte +3 more

Expression-based genome-wide association study links the receptor CD44 in adipose tissue with type 2 diabetes

Proceedings of the National Academy of Sciences(2012)10.1073/pnas.1114513109

N/A

6.3DataRank · unranked

170 citations

Momoko Horikoshi, Kyoko Toda, Satoru Yamada, Kazuo Hara, Junichiro Irie +8 more

Better medicine through machine learning: What’s real, and what’s artificial?

PLOS Medicine(2018)10.1371/journal.pmed.1002721

N/A

6.2DataRank · unranked

119 citations

Aziz Sheikh, Atul Janardhan Butte, Suchi Saria

DETERMINING SIGNIFICANT FOLD DIFFERENCES IN GENE EXPRESSION ANALYSIS

Biocomputing 2001(2000)10.1142/9789814447362_0002

N/A

5.9DataRank · unranked

76 citations

J. YE, H. U. HÄRING, P. Eline Slagboom, M. F. WHITE, Atul Janardhan Butte +4 more

Pan-cancer analysis of whole genomes

Nature(2020)10.1038/s41586-020-1969-6

Top 3%

5.9DataRank

Top 3%3307 citations

Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams +1244 more

Systematic evaluation of environmental factors: persistent pollutants and nutrients correlated with serum lipid levels

International Journal of Epidemiology(2012)10.1093/ije/dys003

N/A

5.8DataRank · unranked

148 citations

Mark R. Cullen, Atul Janardhan Butte, John P. A. Ioannidis, Chirag J. Patel

Evaluating large language models as agents in the clinic

npj Digital Medicine(2024)10.1038/s41746-024-01083-y

N/A

5.8DataRank · unranked

124 citations

Brenda Y. Miao, Eduardo Rodriguez Almaraz, Madhumita Sushil, Atul Janardhan Butte, Ahmed M. Alaa +1 more

A Meta-analysis of Lung Cancer Gene Expression Identifies PTK7 as a Survival Gene in Lung Adenocarcinoma

Cancer Research(2014)10.1158/0008-5472.can-13-2775

N/A

5.5DataRank · unranked

158 citations

Purvesh Khatri, Pawel K. Mazur, Melanie Polin, Yanyan Zheng, Dedeepya Vaka +11 more

Aging disrupts cell subpopulation dynamics and diminishes the function of mesenchymal stem cells

Scientific Reports(2014)10.1038/srep07144

N/A

5.4DataRank · unranked

180 citations

Robert C. Rennert, Michael Januszyk, Ersilia Anghel, Zeshaan N. Maan, Alexander J. Whittam +9 more

A Nutrient-Wide Association Study on Blood Pressure

Circulation(2012)10.1161/circulationaha.112.114058

Top 4%

5.4DataRank

Top 4%143 citations

Chirag J. Patel, Tomonori Okamura, Queenie Chan, Ian J. Brown, Katsuyuki Miura +10 more

Expression of Complement Components Differs Between Kidney Allografts from Living and Deceased Donors

Journal of the American Society of Nephrology(2009)10.1681/asn.2008111145

N/A

5.3DataRank · unranked

133 citations

Li Li, Lihua Ying, Poonam Sansanwal, Tara K. Sigdel, Szu-Chuan Hsieh +7 more

Population Genetic Inference from Personal Genome Data: Impact of Ancestry and Admixture on Human Genomic Variation

The American Journal of Human Genetics(2012)10.1016/j.ajhg.2012.08.025

Top 4%

5.2DataRank

Top 4%112 citations

Simon Gravel, Jake Byrnes, Andres Moreno-Estrada, Shaila Musharoff, Katarzyna Bryc +34 more

Cross-tissue Analysis of Gene and Protein Expression in Normal and Cancer Tissues

Scientific Reports(2016)10.1038/srep24799

Top 4%

5.2DataRank

Top 4%218 citations

Nishant Jain, Dvir Aran, Atul Janardhan Butte, Marina Sirota, Idit Kosti

Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases

PLoS Genetics(2012)10.1371/journal.pgen.1002621

N/A

5.0DataRank · unranked

126 citations

Erik Corona, Martin Sikora, Joel T. Dudley, Alex A. Morgan, Andres Moreno-Estrada +7 more

FoxO6 regulates memory consolidation and synaptic function

Genes & Development(2012)10.1101/gad.208926.112

N/A

4.9DataRank · unranked

139 citations

Asim J. Rashid, Damien Colas, Luis de la Torre-Ubieta, Ruo P. Zhu, Alexander A. Morgan +13 more

Protected Health Information filter (Philter): accurately and securely de-identifying free-text clinical notes

npj Digital Medicine(2020)10.1038/s41746-020-0258-y

N/A

4.8DataRank · unranked

110 citations

Kathleen Muenzen, Thomas A. Peterson, Xuancheng Fan, Benjamin Scott Glicksberg, Gundolf Schenk +9 more

Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

Cancer Research(2012)10.1158/0008-5472.can-12-1097

N/A

4.8DataRank · unranked

125 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

AI in Medicine—JAMA’s Focus on Clinical Outcomes, Patient-Centered Care, Quality, and Equity

JAMA(2023)10.1001/jama.2023.15481

N/A

4.8DataRank · unranked

79 citations

Atul Janardhan Butte, Michael Berkwits, Yulin Hswen, Annette Flanagin, Hannah Park +4 more

Tyrosine kinase-deficient mutant human insulin receptors (Met1153-->Ile) overexpressed in transfected rat adipose cells fail to mediate translocation of epitope-tagged GLUT4.

Proceedings of the National Academy of Sciences(1994)10.1073/pnas.91.12.5587

N/A

4.7DataRank · unranked

90 citations

M Guerre-Millo, M J Zarnowski, M Em, S W Cushman, Michael J. Quon +6 more

Systematic identification of interaction effects between genome- and environment-wide associations in type 2 diabetes mellitus

Human Genetics(2013)10.1007/s00439-012-1258-z

N/A

4.7DataRank · unranked

109 citations

Rong Chen, Keiichi Kodama, John P. A. Ioannidis, Atul Janardhan Butte, Chirag J. Patel

Computerized recruiting for clinical trials in real time

Annals of Emergency Medicine(2003)10.1067/mem.2003.52

N/A

4.6DataRank · unranked

53 citations

Atul Janardhan Butte, Patricia L. Hibberd, Gary R. Fleisher, Gary Fleisher, Debra L. Weiner

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Nature(2020)10.1038/s41586-020-1965-x

Top 5%

4.6DataRank

Top 5%668 citations

Federico Abascal, Jeremiah A. Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj +1240 more

Predicting Adverse Drug Reactions Using Publicly Available PubChem BioAssay Data

Clinical Pharmacology & Therapeutics(2011)10.1038/clpt.2011.81

N/A

4.5DataRank · unranked

82 citations

Annie P Chiang, Yannick Pouliot, Annie Chiang, Atul Janardhan Butte

Time for NIH to lead on data sharing

Science(2020)10.1126/science.aba4456

N/A

4.5DataRank · unranked

66 citations

Michael Stebbins, Barbara E. Bierer, Atul Janardhan Butte, Adrian F. Hernandez, Harlan M. Krumholz +12 more

Disease signatures are robust across tissues and experiments

Molecular Systems Biology(2009)10.1038/msb.2009.66

N/A

4.5DataRank · unranked

112 citations

Robert Tibshirani, Tarangini Deshpande, Atul Janardhan Butte, Joel T. Dudley

Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types

Nature Communications(2019)10.1038/s41467-019-11415-2

N/A

4.4DataRank · unranked

165 citations

BIN CHEN, Dvir Aran, J. Charalel, L. J. van ‘t Veer, Atul Janardhan Butte +6 more

Defective Signaling in the JAK-STAT Pathway Tracks with Chronic Inflammation and Cardiovascular Risk in Aging Humans

Cell Systems(2016)10.1016/j.cels.2016.09.009

N/A

4.4DataRank · unranked

156 citations

David Furman, Francois Hadad, PATRICIA A. LOVELACE, Ying-Wen Huang, Yael Rosenberg-Hasson +13 more

Widespread parainflammation in human cancer

Genome Biology(2016)10.1186/s13059-016-0995-z

N/A

4.2DataRank · unranked

130 citations

Audrey Lasry, Adar Zinger, Moshe Biton, Eli Pikarsky, Asaf Hellman +3 more

Progressive histological damage in renal allografts is associated with expression of innate and adaptive immunity genes

Kidney International(2011)10.1038/ki.2011.245

N/A

4.2DataRank · unranked

100 citations

Purvesh Khatri, Li Li, Tara K. Sigdel, Matthew J. Vitalone, Rong Chen +4 more

ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system

Nucleic Acids Research(2016)10.1093/nar/gkw030

N/A

4.2DataRank · unranked

114 citations

Trevor Hastie, Atul Janardhan Butte, Jacob J. Hughey

Relating genes to function: identifying enriched transcription factors using the ENCODE ChIP-Seq significance tool

Bioinformatics(2013)10.1093/bioinformatics/btt316

N/A

4.2DataRank · unranked

73 citations

BIN CHEN, Atul Janardhan Butte, Raymond K. Auerbach

PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models

Cancer Research(2017)10.1158/0008-5472.can-17-0582

Top 6%

4.0DataRank

Top 6%130 citations

Nathalie Conte, Giorgio Inghirami, Mark A. Murakami, Sebastian Brabetz, Zhiping Gu +57 more

Computational Discovery of Niclosamide Ethanolamine, a Repurposed Drug Candidate That Reduces Growth of Hepatocellular Carcinoma Cells In Vitro and in Mice by Inhibiting Cell Division Cycle 37 Signaling

Gastroenterology(2017)10.1053/j.gastro.2017.02.039

N/A

4.0DataRank · unranked

108 citations

Wei Wei, Li Ma, Bin Yang, Ryan M. Gill, Mei-Sze Chua +4 more

Identifying compartment-specific non-HLA targets after renal transplantation by integrating transcriptome and “antibodyome” measures

Proceedings of the National Academy of Sciences(2009)10.1073/pnas.0900563106

N/A

3.8DataRank · unranked

102 citations

Rong Chen, Neeraja Kambham, Maarten Naesens, Tara K. Sigdel, David B. Miklos +4 more

Systematic functional regulatory assessment of disease-associated variants

Proceedings of the National Academy of Sciences(2013)10.1073/pnas.1219099110

N/A

3.7DataRank · unranked

95 citations

Joel T. Dudley, Kimberly R. Kukurba, Rong Chen, Atul Janardhan Butte, Stephen B. Montgomery +2 more

Making it personal: translational bioinformatics

Journal of the American Medical Informatics Association(2013)10.1136/amiajnl-2013-002028

N/A

3.6DataRank · unranked

51 citations

Lucila Ohno‐Machado, Atul Janardhan Butte

Opening clinical trial data: are the voluntary data-sharing portals enough?

BMC Medicine(2015)10.1186/s12916-015-0525-y

N/A

3.6DataRank · unranked

56 citations

Jennifer B. Bollyky, Sanchita Bhattacharya, Atul Janardhan Butte, Jenna Bollyky, Nophar Geifman

Analysis of the Genetic Basis of Disease in the Context of Worldwide Human Relationships and Migration

PLoS Genetics(2013)10.1371/journal.pgen.1003447

N/A

3.5DataRank · unranked

94 citations

Rong Chen, Martin Sikora, Alexander A. Morgan, Chirag J. Patel, Aditya Ramesh +3 more

FitSNPs: highly differentially expressed genes are more likely to have variants associated with disease

Genome Biology(2008)10.1186/gb-2008-9-12-r170

N/A

3.5DataRank · unranked

84 citations

Alex A. Morgan, Tarangini Deshpande, Li Li, Keiichi Kodama, Annie P Chiang +5 more

Sex differences in disease risk from reported genome-wide association study findings

Human Genetics(2011)10.1007/s00439-011-1081-y

N/A

3.5DataRank · unranked

83 citations

Marc A. Schaub, Marina Sirota, Atul Janardhan Butte, Linda Y. Liu

The receptor CD44 is associated with systemic insulin resistance and proinflammatory macrophages in human adipose tissue

Diabetologia(2015)10.1007/s00125-015-3603-y

N/A

3.5DataRank · unranked

88 citations

Keiichi Kodama, Ke Wei, Lorna L. Tolentino, Okmi Choi, Edgar G. Engleman +5 more

Evaluating the use of large language models to provide clinical recommendations in the Emergency Department

Nature Communications(2024)10.1038/s41467-024-52415-1

N/A

3.4DataRank · unranked

103 citations

Brenda Y. Miao, Aaron E. Kornblith, Atul Janardhan Butte, Christopher Y. K. Williams

Translational bioinformatics: linking knowledge across biological and clinical realms: Figure 1

Journal of the American Medical Informatics Association(2011)10.1136/amiajnl-2011-000245

N/A

3.3DataRank · unranked

65 citations

Atul Janardhan Butte, Yves A. Lussier, Peter Tarczy-Hornoch, Peter Tarczy‐Hornoch, Lucila Ohno‐Machado +1 more

Diabetes Irreversibly Depletes Bone Marrow–Derived Mesenchymal Progenitor Cell Subpopulations

Diabetes(2014)10.2337/db13-1366

N/A

3.3DataRank · unranked

71 citations

Michael Sorkin, Jason P. Glotzbach, Ivan N. Vial, Zeshaan N. Maan, Robert C. Rennert +6 more

Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks

Journal of Cardiovascular Translational Research(2010)10.1007/s12265-010-9214-6

N/A

3.1DataRank · unranked

61 citations

Marina Sirota, Atul Janardhan Butte, Eric E. Schadt, Euan A. Ashley, Joel T. Dudley

Relating hepatocellular carcinoma tumor samples and cell lines using gene expression data in translational research

BMC Medical Genomics(2015)10.1186/1755-8794-8-s2-s5

N/A

3.1DataRank · unranked

82 citations

Marina Sirota, HUA FAN-MINOGUE, Dexter Hadley, Atul Janardhan Butte, BIN CHEN

Machine Learning Methods in Health Economics and Outcomes Research—The PALISADE Checklist: A Good Practices Report of an ISPOR Task Force

Value in Health(2022)10.1016/j.jval.2022.03.022

N/A

3.1DataRank · unranked

78 citations

Noemi Kreif, David J. Vanness, Blythe Adamson, Juan-David Rueda, Federico Felizzi +9 more

Anti-CD44 Antibody Treatment Lowers Hyperglycemia and Improves Insulin Resistance, Adipose Inflammation, and Hepatic Steatosis in Diet-Induced Obese Mice

Diabetes(2014)10.2337/db14-0149

N/A

3.0DataRank · unranked

80 citations

Kyoko Toda, Shojiroh Morinaga, Satoru Yamada, Atul Janardhan Butte, Keiichi Kodama

Differentially Expressed RNA from Public Microarray Data Identifies Serum Protein Biomarkers for Cross-Organ Transplant Rejection and Other Conditions

PLoS Computational Biology(2010)10.1371/journal.pcbi.1000940

N/A

3.0DataRank · unranked

81 citations

Tara K. Sigdel, Li Li, Neeraja Kambham, Joel T. Dudley, Szu-Chuan Hsieh +9 more

Postoperative delirium prediction using machine learning models and preoperative electronic health record data

BMC Anesthesiology(2022)10.1186/s12871-021-01543-y

N/A

3.0DataRank · unranked

100 citations

Catherine Chiu, Elizabeth L. Whitlock, Vanja C. Douglas, Sei Lee, Atul Janardhan Butte +3 more

xCell: Digitally portraying the tissue cellular heterogeneity landscape

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/114165

Top 7%

2.9DataRank

Top 7%114 citations

Zicheng Hu, Atul Janardhan Butte, Dvir Aran

The "etiome": identification and clustering of human disease etiological factors

BMC Bioinformatics(2009)10.1186/1471-2105-10-s2-s14

N/A

2.9DataRank · unranked

51 citations

Paul H. Wise, Atul Janardhan Butte, Yueyi I Liu

Extreme Evolutionary Disparities Seen in Positive Selection across Seven Complex Diseases

PLoS ONE(2010)10.1371/journal.pone.0012236

N/A

2.9DataRank · unranked

72 citations

Joel T. Dudley, Atul Janardhan Butte, Erik Corona

A Computational Model to Define the Molecular Causes of Type 2 Diabetes Mellitus

Diabetes Technology & Therapeutics(2005)10.1089/dia.2005.7.323

N/A

2.8DataRank · unranked

43 citations

Atul Janardhan Butte, Steve Hoberman, Monica Joshi, Josh Levy, Jacques Pappo +1 more

Disease Risk Factors Identified Through Shared Genetic Architecture and Electronic Medical Records

Science Translational Medicine(2014)10.1126/scitranslmed.3007191

N/A

2.8DataRank · unranked

57 citations

David J. Ruau, Chirag J. Patel, Susan C. Weber, Rong Chen, Nicholas P. Tatonetti +3 more

Collaborative Biomedicine in the Age of Big Data: The Case of Cancer

Journal of Medical Internet Research(2014)10.2196/jmir.2496

N/A

2.7DataRank · unranked

64 citations

Atul Janardhan Butte, Sheri D. Schully, William S. Dalton, Muin J. Khoury, Bradford W. Hesse +1 more

Use of machine learning in osteoarthritis research: a systematic literature review

RMD Open(2022)10.1136/rmdopen-2021-001998

N/A

2.6DataRank · unranked

85 citations

Valentina Pedoia, Atul Janardhan Butte, Karine Louati, David Klatzmann, Francis Bérenbaum +3 more

Integrating biomedical research and electronic health records to create knowledge-based biologically meaningful machine-readable embeddings

Nature Communications(2019)10.1038/s41467-019-11069-0

N/A

2.6DataRank · unranked

84 citations

Atul Janardhan Butte, Sergio E. Baranzini, Charlotte A. Nelson

Whole genome sequencing in support of wellness and health maintenance

Genome Medicine(2013)10.1186/gm462

N/A

2.5DataRank · unranked

51 citations

Ambily Sivadas, Rubina Tabassum, Thanawadee Preeprem, Jing Zhao, Dalia Arafat +8 more

Application of Machine Learning for Cytometry Data

Frontiers in Immunology(2022)10.3389/fimmu.2021.787574

N/A

2.5DataRank · unranked

74 citations

Sanchita Bhattacharya, Atul Janardhan Butte, Zicheng Hu

CORAL: Expert-Curated Oncology Reports to Advance Language Model Inference

NEJM AI(2024)10.1056/aidbp2300110

N/A

2.5DataRank · unranked

56 citations

Vanessa E. Kennedy, Divneet Mandair, Brenda Y. Miao, Travis Zack, Atul Janardhan Butte +1 more

To Do No Harm — and the Most Good — with AI in Health Care

NEJM AI(2024)10.1056/aip2400036

N/A

2.4DataRank · unranked

59 citations

Laura Adams, David Blumenthal, Patricia Flatley Brennan, Noah Brown, Atul Janardhan Butte +18 more

A robust and interpretable end-to-end deep learning model for cytometry data

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2003026117

N/A

2.4DataRank · unranked

77 citations

Alice Tang, Jaiveer Singh, Sanchita Bhattacharya, Atul Janardhan Butte, Zicheng Hu

CHARACTERISTICS OF DRUG COMBINATION THERAPY IN ONCOLOGY BY ANALYZING CLINICAL TRIAL DATA ON CLINICALTRIALS.GOV

Biocomputing 2015(2014)10.1142/9789814644730_0008

N/A

2.4DataRank · unranked

51 citations

Marina Sirota, Atul Janardhan Butte, BIN CHEN, MENGHUA WU

Immune response profiling identifies autoantibodies specific to Moyamoya patients

Orphanet Journal of Rare Diseases(2013)10.1186/1750-1172-8-45

N/A

2.2DataRank · unranked

47 citations

Lorelei D. Shoemaker, Rong Chen, Li Li, Atul Janardhan Butte, Gary K. Steinberg +2 more

Content-based microarray search using differential expression profiles

BMC Bioinformatics(2010)10.1186/1471-2105-11-603

N/A

2.2DataRank · unranked

41 citations

Alexander A. Morgan, Joel T. Dudley, Rong Chen, Rahul Thathoo, Russ B. Altman +2 more

The Personal Internetworked Notary and Guardian

International Journal of Medical Informatics(2001)10.1016/s1386-5056(00)00136-2

N/A

2.2DataRank · unranked

36 citations

Kenneth D. Mandl, Do Hoon Oh, Daniel J. Nigrin, Peter Szolovits, Isaac S. Kohane +2 more

MetaCyto: A Tool for Automated Meta-analysis of Mass and Flow Cytometry Data

Cell Reports(2018)10.1016/j.celrep.2018.07.003

N/A

2.2DataRank · unranked

57 citations

Chethan Jujjavarapu, Jacob J. Hughey, Sandra Andorf, Hao-Chih Lee, Pier Federico Gherardini +12 more

The Ultimate Model Organism

Science(2008)10.1126/science.1158343

Top 10%

2.1DataRank

Top 10%46 citations

Atul Janardhan Butte

Comparing the Similarity of Time-Series Gene Expression Using Signal Processing Metrics

Journal of Biomedical Informatics(2001)10.1006/jbin.2002.1037

N/A

2.1DataRank · unranked

35 citations

Ling Bao, Ben Y. Reis, Timothy W. Watkins, Isaac S. Kohane, Atul Janardhan Butte

Expression-based Pathway Signature Analysis (EPSA): Mining publicly available microarray data for insight into human disease

BMC Medical Genomics(2008)10.1186/1755-8794-1-51

Top 10%

2.1DataRank

Top 10%17 citations

Michael G. Walker, Paul J. Utz, Atul Janardhan Butte, Jessica D. Tenenbaum

Protein microarrays identify antibodies to protein kinase Cζ that are associated with a greater risk of allograft loss in pediatric renal transplant recipients

Kidney International(2009)10.1038/ki.2009.384

N/A

2.1DataRank · unranked

60 citations

Li Li, Tara K. Sigdel, Persis P. Wadia, David B. Miklos, Atul Janardhan Butte +2 more

Integrating multiple ‘omics’ analyses identifies serological protein biomarkers for preeclampsia

BMC Medicine(2013)10.1186/1741-7015-11-236

N/A

2.1DataRank · unranked

52 citations

Ting Yang, Jun Ji, Qiaojun Wen, Alexander A. Morgan, Bo Jin +6 more

Inhalable Stem Cell Exosomes Promote Heart Repair After Myocardial Infarction

Circulation(2024)10.1161/circulationaha.123.065005

N/A

2.0DataRank · unranked

106 citations

Shenghuan Sun, DASHUAI ZHU, Xuan Mei, Yongbo Lyu, Ke Huang +10 more

Solving Immunology?

Trends in Immunology(2017)10.1016/j.it.2016.11.006

N/A

2.0DataRank · unranked

53 citations

Ashley Xia, Elizabeth L. Read, Josep Bassaganya-Riera, David A. Hafler, Eduardo Sontag +13 more

GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed

BMC Bioinformatics(2008)10.1186/1471-2105-9-548

Top 11%

2.0DataRank

Top 11%34 citations

Rohan Mallelwar, Ajit Thosar, Shivkumar Venkatasubrahmanyam, Atul Janardhan Butte, Rong Chen

Precision annotation of digital samples in NCBI’s gene expression omnibus

Scientific Data(2017)10.1038/sdata.2017.125

Top 11%

1.9DataRank

Top 11%54 citations

James Pan, Osama El-Sayed, Jihad Aljabban, Imad Aljabban, Tej D. Azad +17 more

In silico and in vitro drug screening identifies new therapeutic approaches for Ewing sarcoma

Oncotarget(2016)10.18632/oncotarget.13385

N/A

1.9DataRank · unranked

57 citations

BIN CHEN, Hani Alturkmani, Stephen Hyter, Colleen A. Flynn, Michael Baltezor +9 more

Evaluating Large Language Models for Drafting Emergency Department Discharge Summaries

medRxiv(2024)10.1101/2024.04.03.24305088

N/A

1.9DataRank · unranked

35 citations

Jaskaran Bains, Tianyu Tang, Kishan Patel, Alexa N. Lucas, Fiona Chen +5 more

Constraints on Biological Mechanism from Disease Comorbidity Using Electronic Medical Records and Database of Genetic Variants

PLOS Computational Biology(2016)10.1371/journal.pcbi.1004885

N/A

1.8DataRank · unranked

34 citations

Marina Sirota, Richard Chen, Atul Janardhan Butte, Russ B. Altman, Steven C. Bagley

Evaluation and integration of 49 genome-wide experiments and the prediction of previously unknown obesity-related genes

Bioinformatics(2007)10.1093/bioinformatics/btm483

N/A

1.8DataRank · unranked

55 citations

Atul Janardhan Butte, Sangeeta B. English

Predicting environmental chemical factors associated with disease-related gene expression data

BMC Medical Genomics(2010)10.1186/1755-8794-3-17

Top 12%

1.8DataRank

Top 12%30 citations

Atul Janardhan Butte, Chirag J. Patel

Likelihood ratios for genome medicine

Genome Medicine(2010)10.1186/gm151

N/A

1.8DataRank · unranked

28 citations

Rong Chen, Atul Janardhan Butte, Alexander A. Morgan

ENABLING INTEGRATIVE GENOMIC ANALYSIS OF HIGH-IMPACT HUMAN DISEASES THROUGH TEXT MINING

Biocomputing 2008(2007)10.1142/9789812776136_0056

N/A

1.7DataRank · unranked

36 citations

Atul Janardhan Butte, Joel T. Dudley

A comparative study of large language model-based zero-shot inference and task-specific supervised classification of breast cancer pathology reports

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae146

N/A

1.7DataRank · unranked

42 citations

Travis Zack, Divneet Mandair, Zhiwei Zheng, Ahmed Wali, Yan-Ning Yu +4 more

Heterogeneity in HIV and cellular transcription profiles in cell line models of latent and productive infection: implications for HIV latency

Retrovirology(2019)10.1186/s12977-019-0494-x

N/A

1.7DataRank · unranked

67 citations

Sara Morón-López, Dvir Aran, Peggy Kim, Christine Hsieh, Sunil Joshi +10 more

A genome-wide association study identifies only two ancestry specific variants associated with spontaneous preterm birth

Scientific Reports(2018)10.1038/s41598-017-18246-5

N/A

1.6DataRank · unranked

50 citations

Jonathan Toung, Dexter Hadley, Ronald J. Wong, Kazumichi Fujioka, Jason Reuter +32 more

Reanalysis of the Rituximab in ANCA-Associated Vasculitis trial identifies granulocyte subsets as a novel early marker of successful treatment

Arthritis Research & Therapy(2015)10.1186/s13075-015-0778-z

N/A

1.6DataRank · unranked

29 citations

Yannick Pouliot, Bjoern Hartmann, Patrick Dunn, Elizabeth Thomson, Atul Janardhan Butte +3 more

Characterisation of digital therapeutic clinical trials: a systematic review with natural language processing

The Lancet Digital Health(2024)10.1016/s2589-7500(23)00244-3

N/A

1.6DataRank · unranked

27 citations

Madhumita Sushil, Ava Xu, Michelle Wang, Douglas V. Arneson, Ellen Berkley +5 more

Investigation of maternal environmental exposures in association with self-reported preterm birth

Reproductive Toxicology(2014)10.1016/j.reprotox.2013.12.005

N/A

1.6DataRank · unranked

51 citations

Ting Yang, Zhongkai Hu, Qiaojun Wen, Joyce F. Sung, Yasser Y. El-Sayed +8 more

Embedding electronic health records onto a knowledge network recognizes prodromal features of multiple sclerosis and predicts diagnosis

Journal of the American Medical Informatics Association(2021)10.1093/jamia/ocab270

N/A

1.6DataRank · unranked

50 citations

Riley Bove, Atul Janardhan Butte, Sergio E. Baranzini, Charlotte A. Nelson

Open challenges in developing digital therapeutics in the United States

PLOS Digital Health(2022)10.1371/journal.pdig.0000008

N/A

1.5DataRank · unranked

33 citations

Douglas V. Arneson, Michelle Wang, Atul Janardhan Butte, Brenda Y. Miao

Transplantomics and Biomarkers in Organ Transplantation: A Report From the First International Conference

Transplantation(2011)10.1097/tp.0b013e3182105fb8

N/A

1.5DataRank · unranked

35 citations

Jacqueline Benjamin, Atul Janardhan Butte, Mark M. Davis, Kathryn Wood, Jeremy Chapman +4 more

Human genomic disease variants: A neutral evolutionary explanation

Genome Research(2012)10.1101/gr.133702.111

N/A

1.4DataRank · unranked

52 citations

Yuseob Kim, Li Liu, Glenn J. Markov, Kristyn Gerold, Rong Chen +3 more

Heterogeneity in recent‐onset type 1 diabetes – a clinical trial perspective

Diabetes/Metabolism Research and Reviews(2015)10.1002/dmrr.2643

N/A

1.4DataRank · unranked

26 citations

Ping Xu, Atul Janardhan Butte, Darrell M. Wilson, Craig A. Beam, Carla J. Greenbaum +3 more

Integration of disease-specific single nucleotide polymorphisms, expression quantitative trait loci and coexpression networks reveal novel candidate genes for type 2 diabetes

Diabetologia(2012)10.1007/s00125-012-2568-3

N/A

1.4DataRank · unranked

29 citations

X. Yang, R. Chen, B. Zhang, Han-Mei-Xuan Kang, Xia Yang +5 more

Trials and Tribulations—11 Reasons Why We Need to Promote Clinical Trials Data Sharing

JAMA Network Open(2021)10.1001/jamanetworkopen.2020.35043

N/A

1.4DataRank · unranked

14 citations

Atul Janardhan Butte

Big data opens a window onto wellness

Nature Biotechnology(2017)10.1038/nbt.3934

N/A

1.4DataRank · unranked

16 citations

Atul Janardhan Butte

Expression-Based Genome-Wide Association Study Links Vitamin D–Binding Protein With Autoantigenicity in Type 1 Diabetes

Diabetes(2016)10.2337/db15-1308

N/A

1.4DataRank · unranked

36 citations

Zhiyuan Zhao, Kyoko Toda, Linda Yip, Rebecca Fuhlbrigge, Dongmei Miao +5 more

THE REFERENCE HUMAN GENOME DEMONSTRATES HIGH RISK OF TYPE 1 DIABETES AND OTHER DISORDERS

Biocomputing 2011(2010)10.1142/9789814335058_0025

Top 15%

1.4DataRank

Top 15%37 citations

Atul Janardhan Butte, Rong Chen

Algorithmic Stewardship in Health Care—Reply

JAMA(2021)10.1001/jama.2020.24103

N/A

1.3DataRank · unranked

2 citations

Ziad Obermeyer, Atul Janardhan Butte, Stephanie Eaneff

A patient-level data meta-analysis of standard-of-care treatments from eight prostate cancer clinical trials

Scientific Data(2016)10.1038/sdata.2016.27

Top 16%

1.3DataRank

Top 16%12 citations

Atul Janardhan Butte, Nophar Geifman

Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage

Nature Immunology(2019)10.1038/s41590-018-0276-y

N/A

1.3DataRank · unranked

5174 citations

Agnieszka P. Looney, Leqian Liu, Esther Wu, Valerie Fong, Austin Hsu +8 more

Genome-wide analysis of host responses to the Pseudomonas aeruginosa type III secretion system yields synergistic effects

Cellular Microbiology(2005)10.1111/j.1462-5822.2005.00581.x

N/A

1.3DataRank · unranked

24 citations

Sangeeta B. English, Matthew C. Wolfgang, Rebekah Jackson, Atul Janardhan Butte, Stephen Lory +1 more

xCell: digitally portraying the tissue cellular heterogeneity landscape

Genome Biology(2017)10.1186/s13059-017-1349-1

N/A

1.3DataRank · unranked

4611 citations

Zicheng Hu, Atul Janardhan Butte, Dvir Aran

Dynamism in gene expression across multiple studies

Physiological Genomics(2010)10.1152/physiolgenomics.90403.2008

N/A

1.2DataRank · unranked

15 citations

Joel T. Dudley, Tarangini Deshpande, Atul Janardhan Butte, Alexander A. Morgan

Computational prediction and experimental validation associating FABP-1 and pancreatic adenocarcinoma with diabetes

BMC Gastroenterology(2011)10.1186/1471-230x-11-5

N/A

1.2DataRank · unranked

20 citations

Atul Janardhan Butte, Kelli D Montgomery, Joel T. Dudley, Pankaj J. Pasricha, Ravi Sharaf +1 more

Germline determinants of the somatic mutation landscape in 2,642 cancer genomes

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/208330

Top 17%

1.2DataRank

Top 17%26 citations

Grace Tiao, Bin Zhu, Tobias Rausch, Francesc Muyas, Alan J. Robertson +108 more

Age- and Sex-Associated Variations in the Sensitivity of Serological Tests Among Individuals Infected With SARS-CoV-2

JAMA Network Open(2021)10.1001/jamanetworkopen.2021.0337

N/A

1.2DataRank · unranked

14 citations

Ayan Patel, Bridgit O. Crews, Omai B. Garner, Lisa Dahm, Charles Wilson +5 more

Bottom-up and top-down paradigms of artificial intelligence research approaches to healthcare data science using growing real-world big data

Journal of the American Medical Informatics Association(2023)10.1093/jamia/ocad085

N/A

1.2DataRank · unranked

17 citations

Madhumita Sushil, Brenda Y. Miao, Atul Janardhan Butte, Michelle Wang

Predicting Inpatient Medication Orders From Electronic Health Record Data

Clinical Pharmacology & Therapeutics(2020)10.1002/cpt.1826

N/A

1.2DataRank · unranked

25 citations

Andrew M. Dai, Alexander J. Ropelewski, Yuan Xue, Laura M. Vardoulakis, Claire Cui +5 more

Translational bioinformatics applications in genome medicine

Genome Medicine(2009)10.1186/gm64

N/A

1.2DataRank · unranked

19 citations

Atul Janardhan Butte

CovidCounties is an interactive real time tracker of the COVID19 pandemic at the level of US counties

Scientific Data(2020)10.1038/s41597-020-00731-8

N/A

1.2DataRank · unranked

19 citations

Matthew Elliott, Arman Mosenia, Boris Oskotsky, Samuel Solodar, Rohit Vashisht +5 more

Comparison of multiplex meta analysis techniques for understanding the acute rejection of solid organ transplants

BMC Bioinformatics(2010)10.1186/1471-2105-11-s9-s6

N/A

1.1DataRank · unranked

24 citations

Purvesh Khatri, Richard Hayden Jones, Atul Janardhan Butte, Richard H. Jones, Minnie Sarwal +1 more

Coordinated reduction of genes of oxidative metabolism in humans with insulin resistance and diabetes: Potential role ofPGC1andNRF1

Proceedings of the National Academy of Sciences(2003)10.1073/pnas.1032913100

N/A

1.1DataRank · unranked

1934 citations

Atul Janardhan Butte, Sarah Crunkhorn, Kenneth Cusi, Rachele Berria, Sangeeta Kashyap +14 more

Wiskott-Aldrich syndrome protein is an effector of Kit signaling

Blood(2009)10.1182/blood-2009-01-200733

N/A

1.1DataRank · unranked

20 citations

Shivkumar Venkatasubrahmanyam, Mrinmoy Sanyal, Shoshana Levy, Thomas Jahn, Atul Janardhan Butte +3 more

A certified de-identification system for all clinical text documents for information extraction at scale

JAMIA Open(2023)10.1093/jamiaopen/ooad045

N/A

1.1DataRank · unranked

47 citations

Gundolf Schenk, Kathleen Muenzen, Boris Oskotsky, Habibeh Ashouri Choshali, Thomas Plunkett +3 more

NOVEL INTEGRATION OF HOSPITAL ELECTRONIC MEDICAL RECORDS AND GENE EXPRESSION MEASUREMENTS TO IDENTIFY GENETIC MARKERS OF MATURATION

Biocomputing 2008(2007)10.1142/9789812776136_0025

N/A

1.1DataRank · unranked

20 citations

Susan C. Weber, PHILIP S. CONSTANTINOU, TODD A. FERRIS, HENRY J. LOWE, Atul Janardhan Butte +3 more

Personal Omics Profiling Reveals Dynamic Molecular and Medical Phenotypes

Cell(2012)10.1016/j.cell.2012.02.009

N/A

1.1DataRank · unranked

1301 citations

George I. Mias, Jennifer Li-Pook-Than, Lihua Jiang, Rong Chen, Elana Miriami +42 more

Systematic pan-cancer analysis of tumour purity

Nature Communications(2015)10.1038/ncomms9971

N/A

1.1DataRank · unranked

1291 citations

Marina Sirota, Atul Janardhan Butte, Dvir Aran

TOWARDS A CYTOKlNE-CELL INTERACTION KNOWLEDGEBASE OF THE ADAPTIVE IMMUNE SYSTEM

Biocomputing 2009(2008)10.1142/9789812836939_0041

N/A

1.1DataRank · unranked

15 citations

OFIR GOLDBERGER, Yael Garten, Yael Rosenberg-Hasson, PATRICIA A. LOVELACE, DAVID L. HIRSCHBERG +5 more

Contextualising adverse events of special interest to characterise the baseline incidence rates in 24 million patients with COVID-19 across 26 databases: a multinational retrospective cohort study

eClinicalMedicine(2023)10.1016/j.eclinm.2023.101932

N/A

1.1DataRank · unranked

27 citations

Azza Shoaibi, Lana Yin Hui Lai, Clair Blacketer, Thamir Alshammari, Rupa Makadia +73 more

Knowledge Network Embedding of Transcriptomic Data from Spaceflown Mice Uncovers Signs and Symptoms Associated with Terrestrial Diseases

Life(2021)10.3390/life11010042

Top 19%

1.1DataRank

Top 19%20 citations

Ana Uriarte Acuna, Amber M. Paul, Ryan T. Scott, Atul Janardhan Butte, Egle Cekanaviciute +3 more

Evolutionary Meta-Analysis of Association Studies Reveals Ancient Constraints Affecting Disease Marker Discovery

Molecular Biology and Evolution(2012)10.1093/molbev/mss079

N/A

1.1DataRank · unranked

23 citations

R. Chen, M. Sanderford, Joel T. Dudley, Maxwell Sanderford, Atul Janardhan Butte +1 more

Identification of Matrix Metalloproteinase-12 as a Candidate Molecule for Prevention and Treatment of Cardiometabolic Disease

Molecular Medicine(2016)10.2119/molmed.2016.00068

N/A

1.0DataRank · unranked

33 citations

Veronica Moreno-Viedma, Alisina Sarabi, Nicole G. Grün, Bianca Itariu, Lukas Leitner +9 more

An integrative method for scoring candidate genes from association studies: application to warfarin dosing

BMC Bioinformatics(2010)10.1186/1471-2105-11-s9-s9

N/A

1.0DataRank · unranked

17 citations

Joel T. Dudley, Hersh Sagreiya, Atul Janardhan Butte, Russ B. Altman, Nicholas P. Tatonetti

Serum tryptophan metabolites are associated with erosive hand osteoarthritis and pain: results from the DIGICOD cohort

Osteoarthritis and Cartilage(2023)10.1016/j.joca.2023.04.007

N/A

1.0DataRank · unranked

36 citations

P. Emond, F. Mifsud, Brenda Y. Miao, A. Courties, A. Lefèvre +17 more

Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data

Science Translational Medicine(2011)10.1126/scitranslmed.3001318

N/A

1.0DataRank · unranked

830 citations

Joel T. Dudley, Jeewon Kim, Annie P Chiang, Alex A. Morgan, E. Alejandro Sweet-Cordero +5 more

Validating pathophysiological models of aging using clinical electronic medical records

Journal of Biomedical Informatics(2010)10.1016/j.jbi.2009.11.007

N/A

1.0DataRank · unranked

9 citations

Alexander A. Morgan, Atul Janardhan Butte, David P. Chen

Clinical assessment incorporating a personal genome

The Lancet(2010)10.1016/s0140-6736(10)60452-7

N/A

0.978DataRank · unranked

676 citations

Atul Janardhan Butte, Matthew T. Wheeler, Rong Chen, Teri E. Klein, Frederick E. Dewey +28 more

ROMOP: a light-weight R package for interfacing with OMOP-formatted electronic health record data

JAMIA Open(2019)10.1093/jamiaopen/ooy059

N/A

0.978DataRank · unranked

13 citations

Boris Oskotsky, Nicholas Giangreco, Phyllis M Thangaraj, Debajyoti Datta, Remi Frazier +7 more

Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks

Proceedings of the National Academy of Sciences(2000)10.1073/pnas.220392197

N/A

0.965DataRank · unranked

620 citations

Pablo Tamayo, Donna Slonim, Todd R. Golub, Isaac S. Kohane, Donna K. Slonim +1 more

Individualized Constellation of Killer Cell Immunoglobulin-Like Receptors and Cognate HLA Class I Ligands that Controls Natural Killer Cell Antiviral Immunity Predisposes COVID-19

Frontiers in Genetics(2022)10.3389/fgene.2022.845474

N/A

0.963DataRank · unranked

32 citations

Karan Rajalingam, Navchetan Kaur, Maelig G. Morvan, Jair Soto, Nancy Lee +9 more

Ethnic Differences in the Relationship Between Insulin Sensitivity and Insulin Response

Diabetes Care(2013)10.2337/dc12-1235

N/A

0.959DataRank · unranked

598 citations

Damon Tojjar, Satoru Yamada, Kyoko Toda, Chirag J. Patel, Atul Janardhan Butte +1 more

FoxO3 Regulates Neural Stem Cell Homeostasis

Cell Stem Cell(2009)10.1016/j.stem.2009.09.014

N/A

0.959DataRank · unranked

596 citations

Victoria A. Rafalski, Alex A. Morgan, Dervis A.M. Salih, Jamie O. Brett, Ashley E. Webb +12 more

Predictive Models for Length of Stay and Discharge Disposition in Elective Spine Surgery: Development, Validation, and Comparison to the ACS NSQIP Risk Calculator

Spine(2022)10.1097/brs.0000000000004490

N/A

0.955DataRank · unranked

25 citations

Dmytro Lituiev, Deeptee Jain, Dexter Hadley, Atul Janardhan Butte, Katherine Bunda +2 more

Algorithmic Identification of Treatment‐Emergent Adverse Events From Clinical Notes Using Large Language Models: A Pilot Study in Inflammatory Bowel Disease

Clinical Pharmacology & Therapeutics(2024)10.1002/cpt.3226

N/A

0.953DataRank · unranked

26 citations

Madhumita Sushil, Balu Bhasuran, Dana Ludwig, James Buchanan, Rebecca Racz +15 more

A survey of current trends in computational drug repositioning

Briefings in Bioinformatics(2015)10.1093/bib/bbv020

N/A

0.953DataRank · unranked

573 citations

Si Zheng, BIN CHEN, Atul Janardhan Butte, S. Joshua Swamidass, ZHIYONG LU +1 more

Deep learning from multiple experts improves identification of amyloid neuropathologies

Acta Neuropathologica Communications(2022)10.1186/s40478-022-01365-0

N/A

0.950DataRank · unranked

33 citations

Ziqi Tang, Nicholas C. Mew, Sakshi Das, Justin Athey, Kirsty E. McAleese +8 more

Minimum information about clinical artificial intelligence modeling: the MI-CLAIM checklist

Nature Medicine(2020)10.1038/s41591-020-1041-y

N/A

0.947DataRank · unranked

551 citations

Giorgio Quer, Ali Torkamani, Raquel Dias, Milena Gianfrancesco, Rima Arnaout +8 more

Cell type–specific gene expression differences in complex tissues

Nature Methods(2010)10.1038/nmeth.1439

N/A

0.946DataRank · unranked

546 citations

Robert Tibshirani, Purvesh Khatri, Dale L. Bodian, Frank Staedtler, Nicholas M Perry +6 more

Exploiting drug-disease relationships for computational drug repositioning

Briefings in Bioinformatics(2011)10.1093/bib/bbr013

N/A

0.943DataRank · unranked

537 citations

T. Deshpande, Joel T. Dudley, Teja Achyut Deshpande, Atul Janardhan Butte

Performance comparison of exome DNA sequencing technologies

Nature Biotechnology(2011)10.1038/nbt.1975

N/A

0.941DataRank · unranked

528 citations

Rui Chen, Hugo Y. K. Lam, Konrad J. Karczewski, Rong Chen, Ghia Euskirchen +3 more

Tracing diagnosis trajectories over millions of patients reveal an unexpected risk in schizophrenia

Scientific Data(2019)10.1038/s41597-019-0220-5

Top 21%

0.940DataRank

Top 21%16 citations

Matthew J. Kan, Nadav Rappoport, Dexter Hadley, Marina Sirota, BIN CHEN +5 more

Modernizing the Data Infrastructure for Clinical Research to Meet Evolving Demands for Evidence

JAMA(2024)10.1001/jama.2024.0268

N/A

0.940DataRank · unranked

25 citations

Caroline Marra, Atul Janardhan Butte, Laura Esserman, Lee A. Fleisher, Cynthia I. Grossman +64 more

A longitudinal big data approach for precision health

Nature Medicine(2019)10.1038/s41591-019-0414-6

N/A

0.933DataRank · unranked

501 citations

Kévin Contrepois, Kegan J. Moneghetti, Wenyu Zhou, Tejaswini Mishra, Samson Mataraso +27 more

Computationally translating molecular discoveries into tools for medicine: translational bioinformatics articles now featured inJAMIA

Journal of the American Medical Informatics Association(2011)10.1136/amiajnl-2011-000343

N/A

0.929DataRank · unranked

15 citations

Richard H. Scheuermann, Atul Janardhan Butte

The use and analysis of microarray data

Nature Reviews Drug Discovery(2002)10.1038/nrd961

N/A

0.927DataRank · unranked

482 citations

Atul Janardhan Butte

Analysis of matched mRNA measurements from two different microarray technologies

Bioinformatics(2002)10.1093/bioinformatics/18.3.405

N/A

0.927DataRank · unranked

481 citations

Tor-Kristian Jenssen, Atul Janardhan Butte, Isaac S. Kohane, Tor‐Kristian Jenssen, Lucila Ohno‐Machado +1 more

Clinical Interpretation and Implications of Whole-Genome Sequencing

JAMA(2014)10.1001/jama.2014.1717

N/A

0.919DataRank · unranked

456 citations

Megan E. Grove, Cuiping Pan, Benjamin A. Goldstein, Jonathan A. Bernstein, Hassan Chaib +26 more

Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks

BMC Bioinformatics(2005)10.1186/1471-2105-6-227

N/A

0.912DataRank · unranked

437 citations

Isaac S. Kohane, Atul Janardhan Butte, Cecily J. Wolfe

Assessing the potential of GPT-4 to perpetuate racial and gender biases in health care: a model evaluation study

The Lancet Digital Health(2024)10.1016/s2589-7500(23)00225-x

N/A

0.909DataRank · unranked

427 citations

Eric Lehman, Mirac Suzgun, Jorge A. Rodriguez, Leo Anthony Celi, Judy Gichoya +9 more

SMYD3 links lysine methylation of MAP3K2 to Ras-driven cancer

Nature(2014)10.1038/nature13320

N/A

0.902DataRank · unranked

407 citations

Nicolas Reynoird, Purvesh Khatri, Alex W. Wilkinson, Shichong Liu, Olena Barbash +14 more

Accuracy of medical billing data against the electronic health record in the measurement of colorectal cancer screening rates

BMJ Open Quality(2020)10.1136/bmjoq-2019-000856

N/A

0.898DataRank · unranked

17 citations

Benjamin Scott Glicksberg, Patrick Avila, Emily Harding-Theobald, Connie W. Wang, Atul Janardhan Butte +2 more

Impact of Different Approaches to Preparing Notes for Analysis With Natural Language Processing on the Performance of Prediction Models in Intensive Care

Critical Care Explorations(2021)10.1097/cce.0000000000000450

N/A

0.892DataRank · unranked

15 citations

Yanting Luo, Hunter Mills, Gundolf Schenk, Atul Janardhan Butte, R. Adams Dudley +2 more

Quantifying the relationship between co-expression, co-regulation and gene function

BMC Bioinformatics(2004)10.1186/1471-2105-5-18

N/A

0.885DataRank · unranked

364 citations

Isaac S. Kohane, Atul Janardhan Butte, Dominic J. Allocco

A Drug Repositioning Approach Identifies Tricyclic Antidepressants as Inhibitors of Small Cell Lung Cancer and Other Neuroendocrine Tumors

Cancer Discovery(2013)10.1158/2159-8290.cd-13-0183

N/A

0.885DataRank · unranked

364 citations

Joel T. Dudley, Pawel K. Mazur, Natasha Flores, Dian Yang, Alec Palmerton +15 more

Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets

PLoS Computational Biology(2010)10.1371/journal.pcbi.1000662

N/A

0.875DataRank · unranked

340 citations

Joel T. Dudley, Annie P Chiang, Rong Chen, Atul Janardhan Butte, Annie Chiang +2 more

Development and Validation of a Deep Learning Strategy for Automated View Classification of Pediatric Focused Assessment With Sonography for Trauma

Journal of Ultrasound in Medicine(2021)10.1002/jum.15868

N/A

0.869DataRank · unranked

20 citations

Newton Addo, Ruolei Dong, Robert Rogers, Jacqueline Grupp‐Phelan, Pavan Gupta +5 more

Performance comparison of whole-genome sequencing platforms

Nature Biotechnology(2011)10.1038/nbt.2065

N/A

0.865DataRank · unranked

319 citations

Michael J. Clark, Rui Chen, Rong Chen, Georges Natsoulis, Maeve O'Huallachain +9 more

The 10,000 Immunomes Project: Building a Resource for Human Immunology

Cell Reports(2018)10.1016/j.celrep.2018.11.013

Top 23%

0.860DataRank

Top 23%17 citations

Matthew J. Kan, Zicheng Hu, Patrick Dunn, Elizabeth Thomson, Sanchita Bhattacharya +4 more

Leveraging models of cell regulation and GWAS data in integrative network-based association studies

Nature Genetics(2012)10.1038/ng.2355

N/A

0.842DataRank · unranked

273 citations

Atul Janardhan Butte, Stephen Friend, Trey Ideker, Eric E. Schadt, Andrea Califano

Systematic Evaluation of Drug–Disease Relationships to Identify Leads for Novel Drug Uses

Clinical Pharmacology & Therapeutics(2009)10.1038/clpt.2009.103

N/A

0.842DataRank · unranked

273 citations

Annie Chiang, Atul Janardhan Butte, Annie P Chiang

Evaluating large language models for drafting emergency department encounter summaries

PLOS Digital Health(2025)10.1371/journal.pdig.0000899

N/A

0.842DataRank · unranked

26 citations

Jaskaran Bains, Tianyu Tang, Kishan Patel, Alexa N. Lucas, Fiona Chen +5 more

A call for deep-learning healthcare

Nature Medicine(2019)10.1038/s41591-018-0320-3

N/A

0.834DataRank · unranked

259 citations

Benjamin Scott Glicksberg, Atul Janardhan Butte, Beau Norgeot

Ethical and regulatory challenges of large language models in medicine

The Lancet Digital Health(2024)10.1016/s2589-7500(24)00061-x

N/A

0.832DataRank · unranked

255 citations

Shelley Yin-Hsi Chang, Wasswa William, Atul Janardhan Butte, Richard H. Scheuermann, Lita Sui Tjien Chew +7 more

Sex Differences in Reported Pain Across 11,000 Patients Captured in Electronic Medical Records

The Journal of Pain(2012)10.1016/j.jpain.2011.11.002

N/A

0.823DataRank · unranked

241 citations

Linda Y. Liu, James D. Clark, Martin S. Angst, Atul Janardhan Butte, David J. Ruau

Mutations in NGLY1 cause an inherited disorder of the endoplasmic reticulum–associated degradation pathway

Genetics in Medicine(2014)10.1038/gim.2014.22

N/A

0.821DataRank · unranked

238 citations

Vandana Shashi, Matthew Bainbridge, Michael J. Gambello, Thomas Bast, Rebecca Crimian +29 more

Reversal of cancer gene expression correlates with drug efficacy and reveals therapeutic targets

Nature Communications(2017)10.1038/ncomms16022

N/A

0.821DataRank · unranked

237 citations

Li Ma, Hyojung Paik, Marina Sirota, Wei Wei, Mei-Sze Chua +5 more

Challenges in the clinical application of whole-genome sequencing

The Lancet(2010)10.1016/s0140-6736(10)60599-5

N/A

0.818DataRank · unranked

232 citations

Matthew T. Wheeler, Louanne Hudgins, Teri E. Klein, Atul Janardhan Butte, Russ B. Altman +3 more

A common rejection module (CRM) for acute rejection across multiple organs identifies novel therapeutics for organ transplantation

Journal of Experimental Medicine(2013)10.1084/jem.20122709

N/A

0.817DataRank · unranked

231 citations

Silke Roedder, Naoyuki Kimura, Katrien De Vusser, Alexander A. Morgan, Yongquan Gong +6 more

Cancer Cell–Autonomous Parainflammation Mimics Immune Cell Infiltration

Cancer Research(2017)10.1158/0008-5472.can-16-3383

N/A

0.815DataRank · unranked

14 citations

Dvir Aran, Atul Janardhan Butte, Yinon Ben‐Neriah, Audrey Lasry

Prediction of preadipocyte differentiation by gene expression reveals role of insulin receptor substrates and necdin

Nature Cell Biology(2005)10.1038/ncb1259

N/A

0.810DataRank · unranked

221 citations

Atul Janardhan Butte, Efi Kokkotou, Vijay K. Yechoor, Cullen M. Taniguchi, Kristina M. Kriauciunas +9 more

Future cancer research priorities in the USA: a Lancet Oncology Commission

The Lancet Oncology(2017)10.1016/s1470-2045(17)30698-8

N/A

0.801DataRank · unranked

208 citations

Chi Van Dang, David B. Agus, Brian M. Alexander, Kenneth C. Anderson, Alan Ashworth +64 more

The Atacama skeleton

Genome Research(2018)10.1101/gr.237834.118

N/A

0.795DataRank · unranked

6 citations

Garry P. Nolan, Atul Janardhan Butte

The promise of digital healthcare technologies

Frontiers in Public Health(2023)10.3389/fpubh.2023.1196596

N/A

0.795DataRank · unranked

199 citations

Ali Torkamani, Atul Janardhan Butte, Benjamin Scott Glicksberg, Björn Schuller, Blanca Rodriguez +25 more

Dynamic MicroRNA Expression Programs During Cardiac Differentiation of Human Embryonic Stem Cells

Circulation: Cardiovascular Genetics(2010)10.1161/circgenetics.109.934281

N/A

0.790DataRank · unranked

193 citations

Shijun Hu, Shivkumar Venkatasubrahmanyam, Ji-Dong Fu, Ning Sun, Oscar J. Abilez +9 more

Single-cell RNA-seq analysis reveals cell subsets and gene signatures associated with Rheumatoid Arthritis Disease Activity

JCI Insight(2024)10.1172/jci.insight.178499

N/A

0.790DataRank · unranked

41 citations

Brenda Y. Miao, Camilla Wibrand, Monica M. Yang, Dmitry Rychkov, Emily Flynn +18 more

Mammary duct luminal epithelium controls adipocyte thermogenic programme

Nature(2023)10.1038/s41586-023-06361-5

N/A

0.790DataRank · unranked

19 citations

Njeri Z. R. Sparman, Douglas V. Arneson, Alexandra Alvarsson, Luis C. Santos, Samuel J. Duesman +20 more

Genome‐scale expression profiling of Hutchinson–Gilford progeria syndrome reveals widespread transcriptional misregulation leading to mesodermal/mesenchymal defects and accelerated atherosclerosis

Aging Cell(2004)10.1111/j.1474-9728.2004.00105.x

N/A

0.789DataRank · unranked

191 citations

Sangeeta B. English, Carl P. Simkevich, David G. Ginzinger, Atul Janardhan Butte, Gerald P. Schatten +5 more

Erratum: Corrigendum: Performance comparison of whole-genome sequencing platforms

Nature Biotechnology(2012)10.1038/nbt0612-562e

N/A

0.771DataRank · unranked

9 citations

Michael J. Clark, Rui Chen, Rong Chen, Georges Natsoulis, Maeve O'Huallachain +10 more

Early immune markers of clinical, virological, and immunological outcomes in patients with COVID-19: a multi-omics study

eLife(2022)10.7554/elife.77943

N/A

0.769DataRank · unranked

19 citations

Kattria van der Ploeg, Saborni Chakraborty, Prabhu S. Arunachalam, Diego AM Mori, Karen B. Jacobson +22 more

Comparison of automated and human assignment of MeSH terms on publicly-available molecular datasets

Journal of Biomedical Informatics(2011)10.1016/j.jbi.2011.03.007

Top 26%

0.768DataRank

Top 26%14 citations

Michael Mbagwu, Joel T. Dudley, Vijay Krishnan, Atul Janardhan Butte, David J. Ruau

Assessment of Postdonation Outcomes in US Living Kidney Donors Using Publicly Available Data Sets

JAMA Network Open(2019)10.1001/jamanetworkopen.2019.1851

Top 27%

0.748DataRank

Top 27%19 citations

Sanchita Bhattacharya, Marina Sirota, Sunisa Laiudompitak, Henry Schaefer, Elizabeth Thomson +4 more

Hematopoietic Stem Cell Quiescence Is Maintained by Compound Contributions of the Retinoblastoma Gene Family

Cell Stem Cell(2008)10.1016/j.stem.2008.07.009

N/A

0.741DataRank · unranked

139 citations

Tim C. Somervaille, Shivkumar Venkatasubrahmanyam, Scott Kogan, Margaret E. McLaughlin, Irving L. Weissman +6 more

Transforming Cardiovascular Care With Artificial Intelligence: From Discovery to Practice

Journal of the American College of Cardiology(2024)10.1016/j.jacc.2024.05.003

N/A

0.739DataRank · unranked

137 citations

Evangelos K. Oikonomou, Girish N. Nadkarni, Jessica R. Morley, Jenna Wiens, Atul Janardhan Butte +2 more

Prototype of running clinical trials in an untrustworthy environment using blockchain

Nature Communications(2019)10.1038/s41467-019-08874-y

N/A

0.728DataRank · unranked

127 citations

Sanchita Bhattacharya, Atul Janardhan Butte, Daniel R. Wong

Data Sharing Enters a New Era

Annals of Internal Medicine(2023)10.7326/m22-3479

N/A

0.727DataRank · unranked

10 citations

Mary M McDermott, Atul Janardhan Butte, Mary Mcdermott, Howard Bauchner

The MI-CLAIM-GEN checklist for generative artificial intelligence in health

Nature Medicine(2025)10.1038/s41591-024-03470-0

N/A

0.720DataRank · unranked

18 citations

Irene Y. Chen, Christopher Y. K. Williams, Jaysón Davidson, Shenghuan Sun, Travis Zack +14 more

Identification of an IFN-γ/mast cell axis in a mouse model of chronic asthma

Journal of Clinical Investigation(2011)10.1172/jci43598

N/A

0.709DataRank · unranked

112 citations

Michael R. Eckart, Alexander A. Morgan, Kaori Mukai, Atul Janardhan Butte, Mindy Tsai +3 more

Recent Advances in Systems and Network Medicine: Meeting Report from the First International Conference in Systems and Network Medicine

Systems Medicine(2020)10.1089/sysm.2020.0001

N/A

0.696DataRank · unranked

12 citations

Ancha Baranova, Pat Baird, Elia Brodsky, Atul Janardhan Butte, Amrita K. Cheema +45 more

Use of a Large Language Model to Assess Clinical Acuity of Adults in the Emergency Department

JAMA Network Open(2024)10.1001/jamanetworkopen.2024.8895

N/A

0.694DataRank · unranked

101 citations

Travis Zack, Brenda Y. Miao, Madhumita Sushil, Michelle Wang, Aaron E. Kornblith +2 more

Telehealth and Mobile Health: Case Study for Understanding and Anticipating Emerging Science and Technology

NAM Perspectives(2023)10.31478/202311e

N/A

0.687DataRank · unranked

13 citations

Debra Mathews, Verily, Atul Janardhan Butte, University of California, San Francisco, Paul Ginsburg +24 more

MULTIPLEXED PROTEIN ARRAY PLATFORMS FOR ANALYSIS OF AUTOIMMUNE DISEASES

Annual Review of Immunology(2006)10.1146/annurev.immunol.24.021605.090709

N/A

0.686DataRank · unranked

96 citations

Steven M. Chan, Michael Kattah, Jessica D. Tenenbaum, Atul Janardhan Butte, Paul J. Utz +2 more

The Case for Algorithmic Stewardship for Artificial Intelligence and Machine Learning Technologies

JAMA(2020)10.1001/jama.2020.9371

N/A

0.680DataRank · unranked

92 citations

Ziad Obermeyer, Atul Janardhan Butte, Stephanie Eaneff

Identification of antiviral antihistamines for COVID-19 repurposing

Biochemical and Biophysical Research Communications(2021)10.1016/j.bbrc.2020.11.095

N/A

0.677DataRank · unranked

90 citations

Michael H. Norris, Rohit Vashisht, Andrew P. Bluhm, Danmeng Li, Yan-Shin J. Liao +6 more

The role of bioinformatics in studying rheumatic and autoimmune disorders

Nature Reviews Rheumatology(2011)10.1038/nrrheum.2011.87

N/A

0.665DataRank · unranked

9 citations

Atul Janardhan Butte, Marina Sirota

A comparative study of zero-shot inference with large language models and supervised modeling in breast cancer pathology classification

Research Square(2024)10.21203/rs.3.rs-3914899/v1

N/A

0.663DataRank · unranked

11 citations

Travis Zack, Divneet Mandair, Zhiwei Zheng, Ahmed Wali, Yan-Ning Yu +3 more

Whole-Exome Sequencing Reveals TopBP1 as a Novel Gene in Idiopathic Pulmonary Arterial Hypertension

American Journal of Respiratory and Critical Care Medicine(2014)10.1164/rccm.201310-1749oc

N/A

0.644DataRank · unranked

72 citations

Ke Yuan, Maria A. Lyuksyutova, Mark E. Orcholski, Eric M. Shuffle, Luke Yancy +16 more

Second-Line Pharmaceutical Treatments for Patients with Type 2 Diabetes

JAMA Network Open(2023)10.1001/jamanetworkopen.2023.36613

N/A

0.640DataRank · unranked

17 citations

Ayan Patel, Lisa Dahm, Cora Han, Kathryn E. Medders, Robert Mowers +5 more

The 10,000 Immunomes Project: Building a Resource for Human Immunology

Cell Reports(2018)10.1016/j.celrep.2018.09.021

N/A

0.637DataRank · unranked

69 citations

Matthew J. Kan, Zicheng Hu, Patrick Dunn, Elizabeth Thomson, Sanchita Bhattacharya +3 more

Translational Bioinformatics for Genomic Medicine

Genomic and Personalized Medicine(2013)10.1016/b978-0-12-382227-7.00023-9

N/A

0.634DataRank · unranked

6 citations

David Chen, Atul Janardhan Butte

Utility of routinely collected electronic health records data to support effectiveness evaluations in inflammatory bowel disease: a pilot study of tofacitinib

BMJ Health & Care Informatics(2021)10.1136/bmjhci-2021-100337

N/A

0.632DataRank · unranked

11 citations

Benjamin Scott Glicksberg, Atul Janardhan Butte, Vivek Ashok Rudrapatna

Relationship of differential gene expression profiles in CD34+ myelodysplastic syndrome marrow cells to disease subtype and progression

Blood(2009)10.1182/blood-2009-08-236422

N/A

0.628DataRank · unranked

65 citations

Douglas T. Ross, Robert Tibshirani, Atul Janardhan Butte, Peter L. Greenberg, Kunju Sridhar

Meta-Analysis of Vaginal Microbiome Data Provides New Insights Into Preterm Birth

Frontiers in Microbiology(2020)10.3389/fmicb.2020.00476

N/A

0.628DataRank · unranked

65 citations

Svetlana Lyalina, Katherine S. Pollard, Atul Janardhan Butte, Marina Sirota, Idit Kosti

Latent physiological factors of complex human diseases revealed by independent component analysis of clinarrays

BMC Bioinformatics(2010)10.1186/1471-2105-11-s9-s4

N/A

0.610DataRank · unranked

7 citations

Joel T. Dudley, Atul Janardhan Butte, David P. Chen

Biomarker and Drug Discovery for Gastroenterology Through Translational Bioinformatics

Gastroenterology(2010)10.1053/j.gastro.2010.07.024

N/A

0.609DataRank · unranked

7 citations

Atul Janardhan Butte, Joel T. Dudley

The Integration of Clinical Trials With the Practice of Medicine

JAMA(2024)10.1001/jama.2024.4088

N/A

0.609DataRank · unranked

57 citations

Alison J. Huang, Roger J. Lewis, Amy P. Abernethy, Robert M. Califf, Martin Landray +63 more

Microfluidic single-cell transcriptional analysis rationally identifies novel surface marker profiles to enhance cell-based therapies

Nature Communications(2016)10.1038/ncomms11945

N/A

0.606DataRank · unranked

56 citations

Michael Januszyk, Michael Sorkin, Melanie Rodrigues, Zeshaan N. Maan, Dominik Duscher +13 more

Reproducibility of gene expression across generations of Affymetrix microarrays

BMC Bioinformatics(2003)10.1186/1471-2105-4-27

N/A

0.604DataRank · unranked

55 citations

Despina Sanoudou, Atul Janardhan Butte, Judith N. Haslett, Louis M. Kunkel, Alan H. Beggs +2 more

Repurpose terbutaline sulfate for amyotrophic lateral sclerosis using electronic medical records

Scientific Reports(2015)10.1038/srep08580

N/A

0.601DataRank · unranked

54 citations

Ah-Young Chung, Hae-Chul Park, Rae Woong Park, Kyoungho Suk, Jihyun Kim +7 more

Altering physiological networks using drugs: steps towards personalized physiology

BMC Medical Genomics(2013)10.1186/1755-8794-6-s2-s7

N/A

0.592DataRank · unranked

5 citations

Mitchell J. Cohen, Geoffrey T. Manley, Atul Janardhan Butte, Adam D Grossman

Correction: Corrigendum: Systematic pan-cancer analysis of tumour purity

Nature Communications(2016)10.1038/ncomms10707

N/A

0.571DataRank · unranked

44 citations

Marina Sirota, Atul Janardhan Butte, Dvir Aran

ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression

Bioinformatics(2011)10.1093/bioinformatics/btr548

N/A

0.568DataRank · unranked

43 citations

Rong Chen, Alexander A. Morgan, Joel T. Dudley, Rohan Mallelwar, Atul Janardhan Butte +1 more

A Quick Guide for Developing Effective Bioinformatics Programming Skills

PLoS Computational Biology(2009)10.1371/journal.pcbi.1000589

N/A

0.564DataRank · unranked

42 citations

Atul Janardhan Butte, Joel T. Dudley

The evolution of computational research in a data-centric world

Cell(2024)10.1016/j.cell.2024.07.045

N/A

0.563DataRank · unranked

15 citations

Karishma Chhugani, Tejasvene Ramesh, Matteo Pellegrini, Sagiv Shifman, Malak S. Abedalthagafi +18 more

PatientExploreR: an extensible application for dynamic visualization of patient clinical history from electronic health records in the OMOP common data model

Bioinformatics(2019)10.1093/bioinformatics/btz409

N/A

0.561DataRank · unranked

41 citations

Boris Oskotsky, Phyllis M Thangaraj, Nicholas Giangreco, Marcus A. Badgeley, Kipp W. Johnson +19 more

Topics in Neonatal Informatics

NeoReviews(2012)10.1542/neo.13-5-e281

N/A

0.556DataRank · unranked

8 citations

William E. Benitz, Peter Tarczy-Hornoch, Atul Janardhan Butte, Christopher A. Longhurst, W.E. Benitz +3 more

Comparing Ethnicity-Specific Reference Intervals for Clinical Laboratory Tests from EHR Data

The Journal of Applied Laboratory Medicine(2018)10.1373/jalm.2018.026492

N/A

0.546DataRank · unranked

37 citations

Hyojung Paik, Boris Oskotsky, Ruth Tor, Elad Ziv, Noah Zaitlen +3 more

Medical Ethics of Large Language Models in Medicine

NEJM AI(2024)10.1056/aira2400038

N/A

0.546DataRank · unranked

37 citations

Shelley Yin-Hsi Chang, Wasswa William, Atul Janardhan Butte, Richard H. Scheuermann, Lita Sui Tjien Chew +6 more

ImmPort: Shared research data for bioinformatics and immunology

2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)(2015)10.1109/bibm.2015.7359752

Top 36%

0.541DataRank

Top 36%10 citations

Elizabeth Thomson, John Campbell, Thomas Smith, Vincent Desborough, Henry Schaefer +8 more

Insulin signal transduction pathways

Trends in Endocrinology & Metabolism(1994)10.1016/1043-2760(94)90104-x

N/A

0.538DataRank · unranked

35 citations

Atul Janardhan Butte, Simeon I. Taylor, Michael J. Quon

Integrative Approach to Pain Genetics Identifies Pain Sensitivity Loci across Diseases

PLoS Computational Biology(2012)10.1371/journal.pcbi.1002538

Top 36%

0.535DataRank

Top 36%10 citations

Joel T. Dudley, Rong Chen, Nicholas G. Phillips, Gary E. Swan, Laura C. Lazzeroni +5 more

Quantifying Variation in Treatment Utilization for Type 2 Diabetes Across Five Major University of California Health Systems

Diabetes Care(2021)10.2337/dc20-0344

N/A

0.533DataRank · unranked

11 citations

Suneil K. Koliwad, Ayan Patel, Atul Janardhan Butte, Ayan R. Patel, Thomas A. Peterson

Electrocardiogram Detection of Pulmonary Hypertension Using Deep Learning

Journal of Cardiac Failure(2023)10.1016/j.cardfail.2022.12.016

N/A

0.524DataRank · unranked

32 citations

SEAN ABREAU, Hunter Mills, Lakshmi Radhakrishnan, LIVIU KLEIN, NEHA MANTRI +15 more

Human splice factors contribute to latent HIV infection in primary cell models and blood CD4+ T cells from ART-treated individuals

PLOS Pathogens(2020)10.1371/journal.ppat.1009060

N/A

0.520DataRank · unranked

31 citations

Sushama Telwatte, Indra Sarabia, Emilie Battivelli, Mauricio Montano, Amanda B. Macedo +11 more

Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies

Cell Genomics(2025)10.1016/j.xgen.2025.100845

N/A

0.517DataRank · unranked

18 citations

Viorel Munteanu, Michael I. Love, Cynthia Flaire Ronkowski, Dhrithi Deshpande, Annie Wong-Beringer +16 more

Strict interpretation of vaccination guidelines with computerized algorithms and improper timing of administered doses

The Pediatric Infectious Disease Journal(2001)10.1097/00006454-200106000-00003

N/A

0.500DataRank · unranked

27 citations

JUDITH S. SHAW, HENRY BERNSTEIN, Henry H. Bernstein, Atul Janardhan Butte

Infection in the intensive care unit alters physiological networks

BMC Bioinformatics(2009)10.1186/1471-2105-10-s9-s4

Top 39%

0.497DataRank

Top 39%6 citations

Mitchell J. Cohen, Geoffrey T. Manley, Atul Janardhan Butte, Adam D Grossman

Relevance Networks: A First Step Toward Finding Genetic Regulatory Networks Within Microarray Data

Statistics for Biology and Health(2003)10.1007/0-387-21679-0_19

N/A

0.483DataRank · unranked

24 citations

Isaac S. Kohane, Atul Janardhan Butte

Current methodologies for translational bioinformatics

Journal of Biomedical Informatics(2010)10.1016/j.jbi.2010.05.002

N/A

0.481DataRank · unranked

8 citations

Atul Janardhan Butte, Lawrence E. Hunter, Yves A. Lussier

Nucleic acid biomarkers of immune response and cell and tissue damage in children with COVID-19 and MIS-C

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101034

N/A

0.470DataRank · unranked

22 citations

Alicia Sotomayor-Gonzalez, Venice Servellita, Jenny Nguyen, Joan Lenz, Sanchita Bhattacharya +30 more

Learning epistatic polygenic phenotypes with Boolean interactions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.24.396846

N/A

0.460DataRank · unranked

5 citations

Karl Kumbier, Aldo Cordova-Palomera, Matthew Aguire, Omer Ronen, Chengzhong Ye +8 more

Coding Inequity: Assessing GPT-4’s Potential for Perpetuating Racial and Gender Biases in Healthcare

medRxiv(2023)10.1101/2023.07.13.23292577

N/A

0.457DataRank · unranked

20 citations

Eric Lehman, Mirac Suzgun, Jorge A. Rodriguez, Leo Anthony Celi, Judy Gichoya +9 more

Defining incidence and complications of fibrolamellar liver cancer through tiered computational analysis of clinical data

npj Precision Oncology(2023)10.1038/s41698-023-00371-2

N/A

0.453DataRank · unranked

16 citations

Kurt P. Losert, Samantha M. Maisel, Jennifer Wild, Amin Yaqubie, Michael Herman +9 more

Identification of Cell Surface Targets through Meta-analysis of Microarray Data

Neoplasia(2012)10.1593/neo.12634

N/A

0.449DataRank · unranked

19 citations

Joel T. Dudley, Atul Janardhan Butte, Christopher H. Contag, Jonathan Liu, Henry Haeberle

Development of a Machine Learning Model of Postoperative Acute Kidney Injury Using Non-Invasive Time-Sensitive Intraoperative Predictors

Bioengineering(2023)10.3390/bioengineering10080932

Top 43%

0.436DataRank

Top 43%9 citations

Alan E. Hubbard, Jean Feng, Atul Janardhan Butte, Romain Pirracchio, Andrew Bishara +2 more

ALK Inhibitor Treatment Patterns and Outcomes in Real-World Patients with ALK-Positive Non-Small-Cell Lung Cancer: A Retrospective Cohort Study

Targeted Oncology(2023)10.1007/s11523-023-00973-7

N/A

0.434DataRank · unranked

17 citations

Shadera Slatter, Jesse Sussell, Chia-Wei Lin, Sarika Ogale, Debajyoti Datta +4 more

Translational Bioinformatics: Data-driven Drug Discovery and Development

Clinical Pharmacology & Therapeutics(2012)10.1038/clpt.2012.55

N/A

0.434DataRank · unranked

17 citations

S Ito, Atul Janardhan Butte, Shinya Ito

Explanatory Model of Dry Eye Disease Using Health and Nutrition Examinations: Machine Learning and Network-Based Factor Analysis From a National Survey

JMIR Medical Informatics(2020)10.2196/16153

N/A

0.416DataRank · unranked

15 citations

Thomas A. Peterson, Atul Janardhan Butte, Kyoung Yul Seo, Hyun Wook Han, Sang Min Nam

A Classifier-based approach to identify genetic similarities between diseases

Bioinformatics(2009)10.1093/bioinformatics/btp226

N/A

0.416DataRank · unranked

15 citations

Irene M. Kaplow, Marina Sirota, Chuong B. Do, Atul Janardhan Butte, Serafim Batzoglou +2 more

The 10,000 Immunomes Project: A resource for human immunology

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/180489

Top 45%

0.412DataRank

Top 45%4 citations

Matthew J. Kan, Zicheng Hu, Patrick Dunn, Elizabeth Thomson, Sanchita Bhattacharya +3 more

Artificial Intelligence—From Starting Pilots to Scalable Privilege

JAMA Oncology(2023)10.1001/jamaoncol.2023.2867

N/A

0.406DataRank · unranked

14 citations

Atul Janardhan Butte

Androgen-deprivation therapy and SARS-CoV-2 in men with prostate cancer: findings from the University of California Health System registry

Annals of Oncology(2021)10.1016/j.annonc.2021.01.067

N/A

0.406DataRank · unranked

14 citations

H.T. Borno, R.R. Aggarwal, E.J. Small, Daniel H. Kwon, Rohit Vashisht +6 more

Trans-channel fluorescence learning improves high-content screening for Alzheimer’s disease therapeutics

Nature Machine Intelligence(2022)10.1038/s42256-022-00490-8

N/A

0.385DataRank · unranked

12 citations

Jay C. Conrad, Noah R. Johnson, Annelies Laeremans, Joanne C. Lee, Jisoo Lee +7 more

Extracting Cell-type-specific Gene Expression Differences from Complex Tissues

Clinical Immunology(2010)10.1016/j.clim.2010.03.037

N/A

0.385DataRank · unranked

3 citations

Alexander Gaidarski, Robert Tibshirani, Purvesh Khatri, Mark Davis, Shai S. Shen-Orr +3 more

Rethinking PICO in the Machine Learning Era: ML-PICO

Applied Clinical Informatics(2021)10.1055/s-0041-1729752

N/A

0.373DataRank · unranked

11 citations

James Anstey, Ron Li, Chethan Sarabu, Reiri Sono, Atul Janardhan Butte +1 more

Allogeneic Antibodies Identify GVL Targets CHAF1b and NuSAP1 in AML Patients.

Blood(2007)10.1182/blood.v110.11.168.168

N/A

0.372DataRank · unranked

3 citations

Atul Janardhan Butte, David B. Miklos, Marc Coram, Persis P. Wadia

DeepHeme, a high-performance, generalizable deep ensemble for bone marrow morphometry and hematologic diagnosis

Science Translational Medicine(2025)10.1126/scitranslmed.adq2162

N/A

0.347DataRank · unranked

7 citations

Zhanghan Yin, Jacob G. Van Cleave, Linlin Wang, Brenda Fried, Khawaja H. Bilal +28 more

Closing the Evidence Gap in Interstitial Lung Disease. The Promise of Real-World Data

American Journal of Respiratory and Critical Care Medicine(2019)10.1164/rccm.201807-1209pp

N/A

0.345DataRank · unranked

9 citations

Kevin J. Anstrom, Atul Janardhan Butte, Carlos Iribarren, Brett Ley, Fernando J. Martinez +4 more

Applications of Translational Bioinformatics in Transplantation

Clinical Pharmacology & Therapeutics(2011)10.1038/clpt.2011.120

N/A

0.345DataRank · unranked

9 citations

Purvesh Khatri, Minnie Sarwal, Atul Janardhan Butte, P. Khatri

Time Aggregation and Model Interpretation for Deep Multivariate Longitudinal Patient Outcome Forecasting Systems in Chronic Ambulatory Care

arXiv (Cornell University)(2018)10.48550/arxiv.1811.12589

N/A

0.337DataRank · unranked

4 citations

Dmytro Lituiev, Benjamin Scott Glicksberg, Atul Janardhan Butte, Beau Norgeot

Getting from Genes to Function in Lung Disease

American Journal of Respiratory and Critical Care Medicine(2010)10.1164/rccm.201002-0180pp

N/A

0.330DataRank · unranked

8 citations

Atul Janardhan Butte, Jack A. Elias, Weiniu Gan, Susan Banks-Schlegel, David Schwartz +4 more

Gene expression deconvolution in linear space

Nature Methods(2011)10.1038/nmeth.1831

N/A

0.330DataRank · unranked

8 citations

Robert Tibshirani, Atul Janardhan Butte, Shai S. Shen-Orr

Creation of an ustekinumab external control arm for Crohn’s disease using electronic health records data: A pilot study

PLOS ONE(2023)10.1371/journal.pone.0282267

N/A

0.330DataRank · unranked

8 citations

Yao-Wen Cheng, Colin Feuille, Arman Mosenia, Jonathan Shih, Yongmei Shi +19 more

Real‐world effectiveness of ustekinumab and vedolizumab in TNF‐exposed pediatric patients with ulcerative colitis

Journal of Pediatric Gastroenterology and Nutrition(2024)10.1002/jpn3.12169

N/A

0.330DataRank · unranked

8 citations

Amy Zhang, Balu Bhasuran, Vignesh G. Ravindranath, Melvin B. Heyman, Sofia G. Verstraete +5 more

From Genes to Geography, from Cells to Community, from Biomolecules to Behaviors: The Importance of Social Determinants of Health

Biomolecules(2022)10.3390/biom12101449

N/A

0.330DataRank · unranked

8 citations

Rohit Vashisht, Atul Janardhan Butte, Jaysón Davidson

MATCHING CANCER GENOMES TO ESTABLISHED CELL LINES FOR PERSONALIZED ONCOLOGY

Biocomputing 2011(2010)10.1142/9789814335058_0026

N/A

0.330DataRank · unranked

8 citations

Rong Chen, Atul Janardhan Butte, Joel T. Dudley

DeepHeme: A generalizable, bone marrow classifier with hematopathologist-level performance

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.20.528987

Top 53%

0.325DataRank

Top 53%5 citations

Shenghuan Sun, Jacob G. Van Cleave, Linlin Wang, Fabienne Lucas, Laura Brown +12 more

Integrating Biomedical Research and Electronic Health Records to Create Knowledge Based Biologically Meaningful Machine Readable Embeddings

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/540963

N/A

0.324DataRank · unranked

4 citations

Atul Janardhan Butte, Sergio E. Baranzini, Charlotte A. Nelson

Development of a machine learning-derived model to predict unplanned ICU admissions after major non-cardiac surgery

BMC Anesthesiology(2025)10.1186/s12871-025-03195-8

N/A

0.321DataRank · unranked

5 citations

Matthias R. Braehler, Anne L. Donovan, Atul Janardhan Butte, Romain Pirracchio, Andrew Bishara +1 more

Heterogeneity of Diabetes: β-Cells, Phenotypes, and Precision Medicine: Proceedings of an International Symposium of the Canadian Institutes of Health Research’s Institute of Nutrition, Metabolism and Diabetes and the U.S. National Institutes of Health’s National Institute of Diabetes and Digestive and Kidney Diseases

Canadian Journal of Diabetes(2021)10.1016/j.jcjd.2021.09.126

N/A

0.313DataRank · unranked

3 citations

Dana K. Andersen, Guillermo Arreaza-Rubín, Christopher L. Pin, Sheryl Sato, C. Bruce Verchere +56 more

Assessing clinical acuity in the Emergency Department using the GPT-3.5 Artificial Intelligence Model

medRxiv(2023)10.1101/2023.08.09.23293795

N/A

0.312DataRank · unranked

7 citations

Travis Zack, Brenda Y. Miao, Madhumita Sushil, Michelle Wang, Atul Janardhan Butte +1 more

Assessing Large Language Models for Oncology Data Inference From Radiology Reports

JCO Clinical Cancer Informatics(2024)10.1200/cci.24.00126

N/A

0.312DataRank · unranked

7 citations

Travis Zack, Arda Demirci, Madhumita Sushil, Brenda Y. Miao, Corynn Kasap +4 more

A pilot study showing a stronger H1N1 influenza vaccination response during pregnancy in women who subsequently deliver preterm

Journal of Reproductive Immunology(2019)10.1016/j.jri.2019.02.004

N/A

0.301DataRank · unranked

4 citations

Sanchita Bhattacharya, Brice Gaudilliere, Gary M. Shaw, David K. Stevenson, Atul Janardhan Butte +3 more

Generation of guideline-based clinical decision trees in oncology using large language models

medRxiv(2024)10.1101/2024.03.04.24303737

N/A

0.300DataRank · unranked

4 citations

Eduardo Rodriguez Almaraz, Amir Ashraf Ganjouei, Arvind Suresh, Travis Zack, Maxim Bravo +6 more

HIV-SEQ Reveals Global Host Gene Expression Differences Between HIV-Transcribing Cells from Viremic and Suppressed People with HIV

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.17.629023

N/A

0.299DataRank · unranked

5 citations

Sushama Telwatte, Xiaoyu Luo, Natalie Elphick, Reuben Thomas, Douglas V. Arneson +9 more

The Reporting Quality of Machine Learning Studies on Pediatric Diabetes Mellitus: Systematic Review

Journal of Medical Internet Research(2024)10.2196/47430

N/A

0.292DataRank · unranked

6 citations

Gábor Kertész, László Gulácsi, János Tibor Czere, Áron Hölgyesi, Hossein Motahari Nezhad +5 more

Use of Bayesian networks to probabilistically model and improve the likelihood of validation of microarray findings by RT-PCR

Journal of Biomedical Informatics(2009)10.1016/j.jbi.2008.08.009

N/A

0.292DataRank · unranked

6 citations

Shou-Ching Shih, Marco F. Ramoni, Lois E. Smith, Atul Janardhan Butte, Shou‐Ching Shih +2 more

RImmPort: an R/Bioconductor package that enables ready-for-analysis immunology research data

Bioinformatics(2016)10.1093/bioinformatics/btw719

N/A

0.292DataRank · unranked

6 citations

Sanchita Bhattacharya, Chethan Jujjavarapu, Sandra Andorf, Jeffery A Wiser, Atul Janardhan Butte +1 more

Biobehavioral phenotypes of chronic low back pain: Psychosocial subgroup identification using latent profile analysis

Pain Medicine(2025)10.1093/pm/pnaf095

N/A

0.292DataRank · unranked

6 citations

Prakruthi Amar Kumar, Wolf Mehling, Irina A. Strigo, Jeffrey C. Lotz, Thomas A. Peterson +40 more

Predictability and stability testing to assess clinical decision instrument performance for children after blunt torso trauma

PLOS Digital Health(2022)10.1371/journal.pdig.0000076

N/A

0.292DataRank · unranked

6 citations

Chandan Singh, Gabriel Devlin, Newton Addo, Christian J. Streck, James F. Holmes +7 more

The Relationship of Arm Span Vs. Height in Boys with Constitutional Delay and Boys and Girls with Short Stature

Pediatric Research(1999)10.1203/00006450-199904020-00511

N/A

0.291DataRank · unranked

1 citations

Isaac S. Kohane, Atul Janardhan Butte

Epistasis regulates genetic control of cardiac hypertrophy

Nature Cardiovascular Research(2025)10.1038/s44161-025-00656-8

N/A

0.288DataRank · unranked

5 citations

Tiffany M. Tang, Michelle Youlton, Chad S. Weldy, Omer Ronen, J. Weston Hughes +19 more

Sequential regression and simulation: a method for estimating causal effects from heterogeneous clinical trials without a common control group

BMC Medical Research Methodology(2023)10.1186/s12874-023-02020-5

N/A

0.280DataRank · unranked

4 citations

Vignesh G. Ravindranath, Douglas V. Arneson, Arman Mosenia, Atul Janardhan Butte, Shan Wang +1 more

A comparative study of zero-shot inference with large language models and supervised modeling in breast cancer pathology classification

arXiv (Cornell University)(2024)10.48550/arxiv.2401.13887

N/A

0.276DataRank · unranked

3 citations

Travis Zack, Divneet Mandair, Zhiwei Zheng, Ahmed Wali, Yan-Ning Yu +3 more

Identifying Reasons for Contraceptive Switching from Real-World Data Using Large Language Models

arXiv (Cornell University)(2024)10.48550/arxiv.2402.03597

N/A

0.269DataRank · unranked

5 citations

Christopher Y. K. Williams, Ebenezer Chinedu-Eneh, Travis Zack, Emily Alsentzer, Atul Janardhan Butte +2 more

Cross-institution natural language processing for reliable clinical association studies: a methodological exploration

Journal of Clinical Epidemiology(2024)10.1016/j.jclinepi.2024.111258

N/A

0.269DataRank · unranked

5 citations

Atul Janardhan Butte, Ewoud Schuit, Maarten van Smeden, Artuur M. Leeuwenberg, Madhumita Sushil

California Stress, Trauma, and Resilience Study (CalSTARS) protocol: A multiomics-based cross-sectional investigation and randomized controlled trial to elucidate the biology of ACEs and test a precision intervention for reducing stress and enhancing resilience

Stress(2024)10.1080/10253890.2024.2401788

N/A

0.269DataRank · unranked

5 citations

Sophia Miryam Schüssler-Fiorenza Rose, Summer Mengelkoch, Daniel P. Moriarity, Jeffrey Gassen, Jenna C. Alley +24 more

Author Correction: Enabling precision medicine in neonatology, an integrated repository for preterm birth research

Scientific Data(2018)10.1038/s41597-018-0004-3

Top 59%

0.261DataRank

Top 59%2 citations

Cristel G. Thomas, Rebecca Liu, Maya Zuhl, Payal Banerjee, Ronald J. Wong +25 more

Constructing adverse event timelines for patients receiving CAR-T therapy using large language models.

Journal of Clinical Oncology(2024)10.1200/jco.2024.42.16_suppl.2555

N/A

0.260DataRank · unranked

3 citations

Arvind Suresh, Travis Zack, Jeffrey Lee Wolf, Brenda Y. Miao, Christopher K. I. Williams +3 more

Large Scale Expression Profiling in Cardiovascular Disease Using Microarrays: Prospects and Pitfalls

Proteomic and Genomic Analysis of Cardiovascular Disease(2003)10.1002/352760152x.ch1

N/A

0.260DataRank · unranked

3 citations

Lauren Riggi, Atul Janardhan Butte, Seigo Izumo, Martina Schinke

Epistasis regulates genetic control of cardiac hypertrophy

Research Square(2023)10.21203/rs.3.rs-3509208/v1

N/A

0.256DataRank · unranked

4 citations

Nathan Youlton, Ana Kenney, Omer Ronen, Elizabeth Chin, Shirley Sutton +21 more

Integrative Network-based Association Studies: Leveraging cell regulatory models in the post-GWAS era

Nature Precedings(2011)10.1038/npre.2011.5732.1

N/A

0.241DataRank · unranked

4 citations

Stephen Friend, Trey Ideker, Atul Janardhan Butte, Eric E. Schadt, Andrea Califano

Repurposing an epithelial sodium channel inhibitor as a therapy for murine and human skin inflammation

Science Translational Medicine(2024)10.1126/scitranslmed.ade5915

N/A

0.241DataRank · unranked

4 citations

Mazen Nasrallah, Leandra V. Jackrazi, Konnie Q. Guo, Jessica M. Fuhriman, Rebecca Szafran +11 more

Reference-based annotation of single cell transcriptomes identifies a profibrotic macrophage niche after tissue injury

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/284604

N/A

0.241DataRank · unranked

4 citations

Agnieszka P. Looney, Leqian Liu, Valerie Fong, Austin Hsu, Paul J. Wolters +5 more

Meta-analysis of Cytometry Data Reveals Racial Differences in Immune Cells

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/130948

N/A

0.241DataRank · unranked

4 citations

Chethan Jujjavarapu, Jacob J. Hughey, Sandra Andorf, Hao-Chih Lee, Pier Federico Gherardini +13 more

A Comparison of the Randomized Clinical Trial Efficacy and Real-World Effectiveness of Tofacitinib for the Treatment of Inflammatory Bowel Disease: A Cohort Study

medRxiv(2019)10.1101/19007195

N/A

0.238DataRank · unranked

2 citations

Benjamin Scott Glicksberg, Atul Janardhan Butte, Vivek Ashok Rudrapatna

CovidCounties - an interactive, real-time tracker of the COVID-19 pandemic at the level of US counties

medRxiv(2020)10.1101/2020.04.28.20083279

N/A

0.224DataRank · unranked

2 citations

Matthew Elliott, Arman Mosenia, Boris Oskotsky, Rohit Vashisht, Travis Zack +4 more

Clinical assessment incorporating a personal genome – Authors' reply

The Lancet(2010)10.1016/s0140-6736(10)61405-5

N/A

0.224DataRank · unranked

2 citations

Rong Chen, Atul Janardhan Butte, Euan A. Ashley, Alexander A. Morgan

Opportunities and Challenges in Democratizing Immunology Datasets

Frontiers in Immunology(2021)10.3389/fimmu.2021.647536

N/A

0.208DataRank · unranked

3 citations

Zicheng Hu, Atul Janardhan Butte, Sanchita Bhattacharya

SYSTEMATIC IDENTIFICATION OF RISK FACTORS FOR ALZHEIMER'S DISEASE THROUGH SHARED GENETIC ARCHITECTURE AND ELECTRONIC MEDICAL RECORDS

Biocomputing 2013(2012)10.1142/9789814447973_0022

N/A

0.208DataRank · unranked

3 citations

David J. Ruau, Rong Chen, Susan C. Weber, Atul Janardhan Butte, Li Li

Deciphering epistatic genetic regulation of cardiac hypertrophy

medRxiv(2023)10.1101/2023.11.06.23297858

N/A

0.208DataRank · unranked

3 citations

Tiffany M. Tang, Michelle Youlton, Chad S. Weldy, Omer Ronen, J. Weston Hughes +20 more

Novel computational methods on electronic health record yields new estimates of transfusion‐associated circulatory overload in populations enriched with high‐risk patients

Transfusion(2023)10.1111/trf.17447

N/A

0.208DataRank · unranked

3 citations

Gregory M. Goldgof, Ayan Patel, Barbee Whitaker, Artur Belov, Brian Chan +8 more

Tumor cell-adipocyte gap junctions activate lipolysis and contribute to breast tumorigenesis

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/277939

N/A

0.208DataRank · unranked

3 citations

Roman Camarda, Serghei Malkov, Lisa J. Zimmerman, Suzanne Manning, Dvir Aran +30 more

PGAGENE: integrating quantitative gene-specific results from the NHLBI Programs for Genomic Applications

Bioinformatics(2003)10.1093/bioinformatics/btg066

Top 65%

0.208DataRank

Top 65%3 citations

Isaac S. Kohane, Atul Janardhan Butte, Kyungjoon Lee

Towards the characterization of normal peripheral immune cells with data from ImmPort

Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics(2014)10.1145/2649387.2666618

N/A

0.199DataRank · unranked

2 citations

Jennifer B. Bollyky, Patrick Dunn, Jeffrey A. Wiser, Sanchita Bhattacharya, Atul Janardhan Butte +2 more

Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies

arXiv (Cornell University)(2023)10.48550/arxiv.2401.02965

N/A

0.192DataRank · unranked

2 citations

Michael I. Love, Cynthia Ronkowski, Dhrithi Deshpande, Lynn M. Schriml, Annie Wong‐Beringer +11 more

RImmPort

Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics(2014)10.1145/2649387.2666619

Top 66%

0.184DataRank

Top 66%1 citations

Sandra Andorf, Sanchita Bhattacharya, Jeffrey A. Wiser, Atul Janardhan Butte, Ravi Shankar

Aligning Synthetic Medical Images with Clinical Knowledge using Human Feedback

arXiv (Cornell University)(2023)10.48550/arxiv.2306.12438

N/A

0.173DataRank · unranked

2 citations

Gregory M. Goldgof, Atul Janardhan Butte, Ahmed M. Alaa, Shenghuan Sun

Understanding contraceptive switching rationales from real world clinical notes using large language models

npj Digital Medicine(2025)10.1038/s41746-025-01615-0

N/A

0.165DataRank · unranked

2 citations

Christopher Y. K. Williams, Ebenezer Chinedu-Eneh, Travis Zack, Emily Alsentzer, Atul Janardhan Butte +2 more

Increasing Frequency of Diabetes Clinic Visits Is Associated with Improving Hemoglobin A1c

Pediatric Research(1999)10.1203/00006450-199904020-00512

N/A

0.165DataRank · unranked

2 citations

Isaac S. Kohane, Atul Janardhan Butte

Algorithmic identification of treatment-emergent adverse events from clinical notes using large language models: a pilot study in inflammatory bowel disease

medRxiv(2023)10.1101/2023.09.06.23295149

N/A

0.165DataRank · unranked

2 citations

Madhumita Sushil, Balu Bhasuran, Dana Ludwig, James Buchanan, Rebecca Racz +15 more

Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Communications Biology(2022)10.1038/s42003-022-03769-z

N/A

0.165DataRank · unranked

2 citations

Lars Feuerbach, Chen Hong, David Mas-Ponte, Randi Istrup Pedersen, PCAWG Drivers and Functional Interpretation Group +1255 more

Assessment of valvular function in over 47,000 people using deep learning-based flow measurements

medRxiv(2023)10.1101/2023.04.29.23289299

N/A

0.165DataRank · unranked

2 citations

Cody Hou, Sean J. Jurgens, Victor Nauffal, Jon Cunningham, Emily S. Lau +12 more

Integrating Expert Knowledge into Large Language Models Improves Performance for Psychiatric Reasoning and Diagnosis

medRxiv(2025)10.1101/2025.07.19.25331840

N/A

0.165DataRank · unranked

2 citations

Kaitlin E Hanss, Andrew J M Halls, Daniel F Becker, Anne L. Glowinski, Atul Janardhan Butte +3 more

WITHDRAWN: Nucleic acid biomarkers of immune response and cell and tissue damage in COVID-19 and MIS-C

medRxiv(2022)10.1101/2022.06.21.22276250

N/A

0.165DataRank · unranked

2 citations

Alicia Sotomayor-Gonzalez, Venice Servellita, Jenny Nguyen, Joan Lenz, Sanchita Bhattacharya +28 more

Case–control study of the association of chronic acid suppression and social determinants of health with COVID-19 infection

Scientific Reports(2021)10.1038/s41598-021-00367-7

N/A

0.165DataRank · unranked

2 citations

Anna L. Silverman, Saroja Bangaru, Douglas V. Arneson, Sonya Dasharathy, Nghia Nguyen +7 more

ImmuneFM: Pre-training Foundation Model from Cytometry Data for Immunology Research

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.09.664020

N/A

0.165DataRank · unranked

2 citations

Sanchita Bhattacharya, Atul Janardhan Butte, Sirui Ding

Assessing Large Language Models for Oncology Data Inference from Radiology Reports

medRxiv(2024)10.1101/2024.05.23.24307579

N/A

0.165DataRank · unranked

2 citations

Travis Zack, Arda Demirci, Madhumita Sushil, Corynn Kasap, Eric A. Collisson +4 more

Revealing the impact of social circumstances on the selection of cancer therapy through natural language processing of social work notes

JAMIA Open(2024)10.1093/jamiaopen/ooae073

N/A

0.165DataRank · unranked

2 citations

Travis Zack, Christopher Y. K. Williams, Atul Janardhan Butte, Madhumita Sushil, Shenghuan Sun

Robust measurement of the real world effectiveness of Tofacitinib for the treatment of Ulcerative Colitis using electronic health records: a protocol and statistical analysis plan v1

(2019)10.17504/protocols.io.2bqgamw

N/A

0.165DataRank · unranked

2 citations

Atul Janardhan Butte, Vivek Ashok Rudrapatna

Neurotechnology and Noninvasive Neuromodulation: Case Study for Understanding and Anticipating Emerging Science and Technology

NAM Perspectives(2023)10.31478/202311c

N/A

0.165DataRank · unranked

2 citations

Debra Mathews, Verily, Atul Janardhan Butte, University of California, San Francisco, Juan Enriquez +20 more

Real-world performance of SARS-Cov-2 serology tests in the United States, 2020

PLOS ONE(2023)10.1371/journal.pone.0279956

N/A

0.165DataRank · unranked

2 citations

Anthony M. Louder, Carly Kabelac, Christopher M. Frederick, Natalie E. Sheils, Elizabeth H. Eldridge +28 more

Learning epistatic polygenic phenotypes with Boolean interactions

PLOS ONE(2024)10.1371/journal.pone.0298906

N/A

0.165DataRank · unranked

2 citations

Karl Kumbier, Aldo Cordova-Palomera, Matthew Aguirre, Omer Ronen, Chengzhong Ye +8 more

The 10,000 Immunomes Project: A Resource for Human Immunology

Journal of Allergy and Clinical Immunology(2018)10.1016/j.jaci.2017.12.857

N/A

0.147DataRank · unranked

1 citations

Zicheng Hu, Patrick Dunn, Elizabeth Thomson, Sanchita Bhattacharya, Kelly A. Zalocusky +3 more

A Systemic age dependent defect in immune-cell signaling response induced by inflammation (138.2)

The Journal of Immunology(2010)10.4049/jimmunol.184.supp.138.2

N/A

0.137DataRank · unranked

1 citations

David Furman, Brian Kidd, Mark Davis, Shai S. Shen-Orr, Holden T. Maecker +3 more

Trans-Channel Fluorescence Learning Improves High-Content Screening for Alzheimer's Disease Therapeutics

SSRN Electronic Journal(2021)10.2139/ssrn.3762764

N/A

0.136DataRank · unranked

1 citations

Joanne C. Lee, Jisoo Lee, Annelies Laeremans, Stanley B. Prusiner, Sourav Bandyopadhyay +7 more

Correction: Corrigendum: Mutations in NGLY1 cause an inherited disorder of the endoplasmic reticulum–associated degradation pathway

Genetics in Medicine(2014)10.1038/gim.2014.61

N/A

0.136DataRank · unranked

1 citations

Vandana Shashi, Matthew N. Bainbridge, Michael J. Gambello, Farah Zahir, Thomas Bast +28 more

Mammary ductal epithelium controls cold-induced adipocyte thermogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.14.378687

N/A

0.122DataRank · unranked

1 citations

Douglas V. Arneson, Alexandra Alvarsson, Karthickeyan Chella Krishnan, Alessia Centzone, Sanil Patel +12 more

Quantifying Variation in Treatment Utilization for Type 2 Diabetes Across Five Major University of California Health Systems

Figshare(2021)10.2337/figshare.13549142.v1

N/A

0.121DataRank · unranked

1 citations

Valy Fontil, Suneil K. Koliwad, Ayan Patel, Atul Janardhan Butte, Thomas Peterson +2 more

A robust and interpretable, end-to-end deep learning model for cytometry data

The Journal of Immunology(2020)10.4049/jimmunol.204.supp.159.8

N/A

0.120DataRank · unranked

1 citations

Alice Tang, Jaiveer Singh, Sanchita Bhattacharya, Atul Janardhan Butte, Zicheng Hu

Deep Learning for Morphology-Based, Bone Marrow Cell Classification

Blood(2023)10.1182/blood-2023-172654

N/A

0.118DataRank · unranked

1 citations

Linlin Wang, Fabienne Lucas, Laura Brown, Leonardo Boiocchi, Jeeyeon Baik +12 more

Bioinformatic and Computational Analysis for Genomic Medicine

Essentials of Genomic and Personalized Medicine(2010)10.1016/b978-0-12-374934-5.00010-6

N/A

0.115DataRank · unranked

1 citations

Atul Janardhan Butte

S0818 Accurate Machine Classification of Ulcerative Colitis Mayo Subscores From Electronic Health Record Procedure Reports

American Journal of Gastroenterology(2020)10.14309/01.ajg.0000705320.33817.a5

N/A

0.104DataRank · unranked

1 citations

Saransh Gupta, Taline Mardirossian, Rohan Narain, Arman Mosenia, Vivek Ashok Rudrapatna +1 more

From trial data to personalized medicine: a validated framework with an application to Crohn’s disease

npj Digital Medicine(2025)10.1038/s41746-025-01627-w

N/A

0.104DataRank · unranked

1 citations

Vignesh G. Ravindranath, Douglas V. Arneson, Arman Mosenia, Atul Janardhan Butte, Shan Wang +1 more

SA50 Topic Modeling on Social Work Notes for Exploring Social Determinants of Health Factors

Value in Health(2022)10.1016/j.jval.2022.04.1716

N/A

0.104DataRank · unranked

1 citations

M Sushil, Shenghuan Sun, Atul Janardhan Butte

Robust prediction of clinical outcomes using cytometry data

The Journal of Immunology(2018)10.4049/jimmunol.200.supp.174.31

N/A

0.104DataRank · unranked

1 citations

Benjamin Scott Glicksberg, Atul Janardhan Butte, Zicheng Hu

Topic Modeling on Clinical Social Work Notes for Exploring Social Determinants of Health Factors

arXiv (Cornell University)(2022)10.48550/arxiv.2212.01462

N/A

0.104DataRank · unranked

1 citations

Travis Zack, Madhumita Sushil, Atul Janardhan Butte, Shenghuan Sun

Trans-channel fluorescence learning improves high-content screening for Alzheimer’s disease therapeutics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.08.425973

N/A

0.104DataRank · unranked

1 citations

Jacob I. Ayers, Annelies Laeremans, Joanne C. Lee, Jisoo Lee, Stanley B. Prusiner +7 more

Personalized Medicine and Cardiovascular Disease: From Genome to Bedside

Current Cardiovascular Risk Reports(2011)10.1007/s12170-011-0202-4

N/A

0.104DataRank · unranked

1 citations

Frederick E. Dewey, Juan Manuel Peralta, Joshua W. Knowles, Rong Chen, Atul Janardhan Butte +3 more

Derivation of a Scale-Independent Parameter Which Characterizes Genetic Sequence Comparisons

Computers and Biomedical Research(1993)10.1006/cbmr.1993.1037

N/A

0.104DataRank · unranked

1 citations

Atul Janardhan Butte, Paolo B. DePetrillo

Five Year Pediatric Use of a Digital Wearable Fitness Device: Lessons from a Pilot Case Study

medRxiv(2020)10.1101/2020.10.21.20215491

N/A

0.104DataRank · unranked

1 citations

Amir Bahmani, Atul Janardhan Butte, Sara Mostafavi, Valentina Snetkova, Syzygy Butte +1 more

Advancing evidence-based treatment of infectious diseases in children with real-world data: Opportunities and challenges

Frontiers in Pharmacology(2023)10.3389/fphar.2022.1054688

N/A

0.104DataRank · unranked

1 citations

Atul Janardhan Butte, Kendra K. Radtke

413 A NUTRIENT WIDE ASSOCIATION STUDY ON BLOOD PRESSURE

Journal of Hypertension(2012)10.1097/01.hjh.0000420268.43390.e7

Top 78%

0.104DataRank

Top 78%1 citations

Ioanna Tzoulaki, Queenie Chan, Ian J. Brown, Katsuyuki Miura, Hirotsugu Ueshima +10 more

Dr-LLaVA: Visual Instruction Tuning with Symbolic Clinical Grounding

arXiv (Cornell University)(2024)10.48550/arxiv.2405.19567

N/A

0.104DataRank · unranked

1 citations

Gregory M. Goldgof, Alexander Schubert, Z.J. Sun, Thomas Hartvigsen, Atul Janardhan Butte +2 more

Bioinformatics in Functional Genomics

Wiley StatsRef: Statistics Reference Online(2014)10.1002/9781118445112.stat05444

N/A

0.104DataRank · unranked

1 citations

Atul Janardhan Butte, Isaac S. Kohane

A robust and interpretable, end-to-end deep learning model for cytometry data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.05.934521

N/A

0.104DataRank · unranked

1 citations

Alice Tang, Jaiveer Singh, Sanchita Bhattacharya, Atul Janardhan Butte, Zicheng Hu

Elucidating genetic associations that differentiate pain progression cluster groups in knee osteoarthritis patients

Osteoarthritis and Cartilage(2019)10.1016/j.joca.2019.02.684

N/A

0.104DataRank · unranked

1 citations

J. Lee, F. Liu, V. Pedoia, S. Majumdar, Nadav Rappoport +4 more

Clinical utility of sequence-based genotype compared with that derivable from genotyping arrays

Journal of the American Medical Informatics Association(2012)10.1136/amiajnl-2011-000737

N/A

0.104DataRank · unranked

1 citations

R. Chen, Alex A. Morgan, Rong Chen, Atul Janardhan Butte

COMPUTATIONAL DRUG REPOSITIONING

Biocomputing 2013(2012)10.1142/9789814447973_0001

N/A

0.104DataRank · unranked

1 citations

PANKAJ AGARWAL, Atul Janardhan Butte, ZHIYONG LU

Phenome-Wide Risk Evaluation of GLP-1 Receptor Agonist Use in Type 2 Diabetes with Real-World Data Across Multiple Healthcare Systems

SSRN Electronic Journal(2025)10.2139/ssrn.5412801

N/A

0.104DataRank · unranked

1 citations

Ayan Patel, Lisa Dahm, Pagan Morris, David Gonzalez, Rob W. Follett +10 more

Investigating CAR-T Treatment Access for Multiple Myeloma Patients Using Real-World Evidence

medRxiv(2025)10.1101/2025.04.16.25325784

N/A

0.104DataRank · unranked

1 citations

Anupama Kumar, Ayan Patel, Irene Y. Chen, Atul Janardhan Butte, Travis Zack +2 more

Creation of a ustekinumab external control arm for Crohn’s disease using electronic health records data: a pilot study

medRxiv(2021)10.1101/2021.11.12.21266064

N/A

0.104DataRank · unranked

1 citations

Yao-Wen Cheng, Colin Feuille, Arman Mosenia, Jonathan Shih, Yongmei Shi +19 more

Accurate, Robust, and Scalable Machine Abstraction of Mayo Endoscopic Subscores from Colonoscopy Reports

medRxiv(2022)10.1101/2022.06.19.22276606

N/A

0.104DataRank · unranked

1 citations

Balu Bhasuran, Arman Mosenia, Fatema Yasini, Saransh Gupta, Taline Mardirossian +6 more

Immunologic Profiling Suggests an Association Between Treg Cell Dysfunction and Pain in Knee Osteoarthritis

Arthritis & Rheumatology(2026)10.1002/art.43437

N/A

0.104DataRank · unranked

1 citations

Johanna Dubois, Maria Marco Salvador, Paul Stys, Fabien Pitoiset, Alexandra Roux +24 more

Personalizing treatment selection in Crohn’s disease: a meta-analysis of individual participant data from fifteen randomized controlled trials

medRxiv(2023)10.1101/2023.11.10.23291837

N/A

0.104DataRank · unranked

1 citations

Vignesh G. Ravindranath, Douglas V. Arneson, Arman Mosenia, Atul Janardhan Butte, Shan Wang +1 more

P10.06.A AGENT-BASED MODELING FOR PATIENT-CENTERED CLINICAL DECISION SUPPORT IN NEURO-ONCOLOGY

Neuro-Oncology(2024)10.1093/neuonc/noae144.182

N/A

0.104DataRank · unranked

1 citations

Brenda Y. Miao, Y Yadav, J de Groot, Jasmine Young, A Vo +14 more

COMPUTATIONAL APPROACHES TO DRUG REPURPOSING AND PHARMACOLOG- SESSION INTRODUCTION

Biocomputing 2014(2013)10.1142/9789814583220_0011

N/A

0.104DataRank · unranked

1 citations

ZHIYONG LU, PANKAJ AGARWAL, Atul Janardhan Butte, S. Joshua Swamidass

WITHDRAWN: A gene expression-based diagnostic classifier for identification of severe COVID-19 and multisystem inflammatory syndrome in children (MIS-C)

medRxiv(2022)10.1101/2022.09.26.22280395

N/A

0.104DataRank · unranked

1 citations

Conor J. Loy, Jenny Nguyen, Venice Servellita, Sanchita Bhattacharya, Joan Lenz +31 more

A SYSTEMATIC ASSESSMENT OF LINKING GENE EXPRESSION WITH GENETIC VARIANTS FOR PRIORITIZING CANDIDATE TARGETS

Biocomputing 2015(2014)10.1142/9789814644730_0037

N/A

0.104DataRank · unranked

1 citations

BIN CHEN, WERONIKA SIKORA-WOHLFELD, Marina Sirota, Atul Janardhan Butte, HUA FAN-MINOGUE

Supplementary Figure Legends from A Meta-analysis of Lung Cancer Gene Expression Identifies PTK7 as a Survival Gene in Lung Adenocarcinoma

INDIGO (University of Illinois at Chicago)(2023)10.1158/0008-5472.22400420.v1

N/A

0DataRank · unranked

0 citations

Purvesh Khatri, Pawel K. Mazur, Melanie Polin, Yanyan Zheng, Dedeepya Vaka +11 more

S1 from PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models

Figshare(2023)10.1158/0008-5472.22419099.v1

N/A

0DataRank · unranked

0 citations

Nathalie Conte, Giorgio Inghirami, Mark A. Murakami, Sebastian Brabetz, Zhiping Gu +58 more

341: Allogeneic Antibodies Specifically Target AML Antigen NuSAP1 after Bone Marrow Transplantation

Biology of Blood and Marrow Transplantation(2008)10.1016/j.bbmt.2007.12.351

N/A

0DataRank · unranked

0 citations

Persis P. Wadia, Marc Coram, Atul Janardhan Butte, David B. Miklos

Wiskott-Aldrich Syndrome Protein (WASP) Is An Effector of Kit Signaling.

Blood(2008)10.1182/blood.v112.11.1410.1410

N/A

0DataRank · unranked

0 citations

Shivkumar Venkatasubrahmanyam, Mrinmoy Sanyal, Yujun Yang, Jing Huang, Shoshana Levy +4 more

Supplementary Methods from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

Figshare(2023)10.1158/0008-5472.22395891.v1

N/A

0DataRank · unranked

0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

642: Transcriptomics and proteomics ensemble analyses reveal serological protein panel for preeclampsia diagnosis

American Journal of Obstetrics and Gynecology(2013)10.1016/j.ajog.2012.10.808

N/A

0DataRank · unranked

0 citations

Matthew Cooper, Ting Yang, Jun Ji, Qiaojun Wen, Gongxing Chen +5 more

Data from A Drug Repositioning Approach Identifies Tricyclic Antidepressants as Inhibitors of Small Cell Lung Cancer and Other Neuroendocrine Tumors

(2023)10.1158/2159-8290.c.6545696.v1

N/A

0DataRank · unranked

0 citations

Joel T. Dudley, Pawel K. Mazur, Natasha Flores, Dian Yang, Alec Palmerton +15 more

Supplementary Figure S1 from A Drug Repositioning Approach Identifies Tricyclic Antidepressants as Inhibitors of Small Cell Lung Cancer and Other Neuroendocrine Tumors

(2023)10.1158/2159-8290.22528352

N/A

0DataRank · unranked

0 citations

Joel T. Dudley, Pawel K. Mazur, Natasha Flores, Dian Yang, Alec Palmerton +15 more

Supplementary Table S1 from A Drug Repositioning Approach Identifies Tricyclic Antidepressants as Inhibitors of Small Cell Lung Cancer and Other Neuroendocrine Tumors

Figshare(2023)10.1158/2159-8290.22528325.v1

N/A

0DataRank · unranked

0 citations

Joel T. Dudley, Pawel K. Mazur, Natasha Flores, Dian Yang, Alec Palmerton +15 more

Additional file 6: of Widespread parainflammation in human cancer

Figshare(2016)10.6084/m9.figshare.c.3614108_d5

Top 100%

0DataRank

Top 100%0 citations

Audrey Lasry, Adar Zinger, Moshe Biton, Eli Pikarsky, Asaf Hellman +3 more

S0525 An Electronic Health Records-Based Intervention Improves Appropriate Referrals for Upper Endoscopy: A Prospective, Single Center Study

American Journal of Gastroenterology(2020)10.14309/01.ajg.0000704148.62362.ed

N/A

0DataRank · unranked

0 citations

Myung Ko, Arman Mosenia, Kavita Radhakrishnan, Priya Kathpalia, Vivek Ashok Rudrapatna +2 more

Extracting TNFi switching reasons and trajectories from real-world data using large language models

JAMIA Open(2025)10.1093/jamiaopen/ooaf132

N/A

0DataRank · unranked

0 citations

Marie Binvignat, Maxim Bravo, Claire Q Miao, Ahmed M. Alaa, Vivek Ashok Rudrapatna +7 more

Extracting TNFi Switching Reasons and Trajectories From Real-World Data Using Large Language Models

medRxiv(2025)10.1101/2025.04.14.25325834

N/A

0DataRank · unranked

0 citations

Marie Binvignat, Maxim Bravo, Claire Q Miao, Ahmed M. Alaa, Vivek Ashok Rudrapatna +7 more

Additional file 4: of xCell: digitally portraying the tissue cellular heterogeneity landscape

Figshare(2017)10.6084/m9.figshare.c.3931732_d4

Top 100%

0DataRank

Top 100%0 citations

Zicheng Hu, Atul Janardhan Butte, Dvir Aran

The Minimum Information about CLinical Artificial Intelligence Checklist for Generative Modeling Research (MI-CLAIM-GEN)

arXiv (Cornell University)(2024)10.48550/arxiv.2403.02558

N/A

0DataRank · unranked

0 citations

Irene Y. Chen, Christopher Y. K. Williams, Jaysón Davidson, Augusto García-Agúndez, Harry Sun +13 more

Secondary Use of Electronic Health Records for Building Large, Real-World ILD Cohorts

TP27. TP027 DIFFUSE PARENCHYMAL LUNG DISEASE: PATIENT CHARACTERISTICS AND OUTCOMES(2021)10.1164/ajrccm-conference.2021.203.1_meetingabstracts.a1873

N/A

0DataRank · unranked

0 citations

O. Gologorskaya, H.R. Collard, Erica Farrand, Oksana Gologorskaya, Hunter Mills +3 more

Supplementary Table 5 from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

(2023)10.1158/0008-5472.22395876

Top 100%

0DataRank

Top 100%0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

S1 from PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models

(2023)10.1158/0008-5472.22419099

N/A

0DataRank · unranked

0 citations

Nathalie Conte, Giorgio Inghirami, Mark A. Murakami, Sebastian Brabetz, Zhiping Gu +57 more

Identification of Candidate IDDM Disease Susceptibility Genes in the Idd Regions of NOD Mice by Temporal Microarray Gene Expression Data Analysis

Clinical Immunology(2007)10.1016/j.clim.2007.03.222

N/A

0DataRank · unranked

0 citations

Demi Dang, Claire Holness, Hideyuki Iwai, Mark Hartnett, C. Garrison Fathman +2 more

A Systemic Age Dependent Defect in Immune-cell Signaling Response is Associated with Longevity Biomarkers

Clinical Immunology(2010)10.1016/j.clim.2010.03.066

N/A

0DataRank · unranked

0 citations

David Furman, Brian Kidd, Mark Davis, Shai S. Shen-Orr, Holden T. Maecker +3 more

Additional file 5 of Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients

Figshare(2022)10.6084/m9.figshare.18132792

Top 100%

0DataRank

Top 100%0 citations

Boris Oskotsky, Atul Janardhan Butte, Zicheng Hu, Navchetan Kaur

Supplementary Tables 1 - 7 from A Meta-analysis of Lung Cancer Gene Expression Identifies PTK7 as a Survival Gene in Lung Adenocarcinoma

INDIGO (University of Illinois at Chicago)(2023)10.1158/0008-5472.22400408.v1

Top 100%

0DataRank

Top 100%0 citations

Purvesh Khatri, Pawel K. Mazur, Melanie Polin, Yanyan Zheng, Dedeepya Vaka +11 more

Integration of Public Microarray Data with Single Cell Gene Expression Profiling Facilitates Identification of Transcriptionally-Defined Subpopulations in Small Cell Lung Cancer

Journal of Surgical Research(2014)10.1016/j.jss.2013.11.471

N/A

0DataRank · unranked

0 citations

P. Khatri, G.C. Gurtner, Michael Januszyk, Robert C. Rennert, Michael Sorkin +2 more

Assessment of Large Language Models for Enhancing Diabetologist-Developed Personalized Treatment Plans in Complex Type 2 Diabetes

Clinical Diabetes(2025)10.2337/cd25-0015

N/A

0DataRank · unranked

0 citations

Madhumita Sushil, Brenda Y. Miao, Sarah Kim, Umesh Masharani, Gregory Ku +7 more

Data from A Meta-analysis of Lung Cancer Gene Expression Identifies PTK7 as a Survival Gene in Lung Adenocarcinoma

(2023)10.1158/0008-5472.c.6505586.v1

N/A

0DataRank · unranked

0 citations

Purvesh Khatri, Pawel K. Mazur, Melanie Polin, Yanyan Zheng, Dedeepya Vaka +11 more

Tu1650 – Accuracy of Electronic Health Record Billing Data in the Measurement of Colorectal Cancer Screening Rates

Gastroenterology(2019)10.1016/s0016-5085(19)39654-4

N/A

0DataRank · unranked

0 citations

Patrick Avila, Emily Harding-Theobald, Connie Wang, Vivek Ashok Rudrapatna, Benjamin Scott Glicksberg +2 more

Real-World Type 2 Diabetes Second-Line Treatment Allocation Among Patients

medRxiv(2025)10.1101/2025.03.26.25324631

Top 100%

0DataRank

Top 100%0 citations

Rohit Vashisht, Ayan Patel, Suneil K. Koliwad, Atul Janardhan Butte, Kendra K. Radtke +2 more

Supplementary Figure 4 from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

Figshare(2023)10.1158/0008-5472.22395903.v1

N/A

0DataRank · unranked

0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

Supplementary Figure S2 from A Drug Repositioning Approach Identifies Tricyclic Antidepressants as Inhibitors of Small Cell Lung Cancer and Other Neuroendocrine Tumors

(2023)10.1158/2159-8290.22528349

N/A

0DataRank · unranked

0 citations

Joel T. Dudley, Pawel K. Mazur, Natasha Flores, Dian Yang, Alec Palmerton +15 more

S1 from PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models

(2024)10.1158/0008-5472.26366795

N/A

0DataRank · unranked

0 citations

Nathalie Conte, Giorgio Inghirami, Mark A. Murakami, Sebastian Brabetz, Zhiping Gu +58 more

Supplementary Figure S7 from A Drug Repositioning Approach Identifies Tricyclic Antidepressants as Inhibitors of Small Cell Lung Cancer and Other Neuroendocrine Tumors

INDIGO (University of Illinois at Chicago)(2023)10.1158/2159-8290.22528331.v1

N/A

0DataRank · unranked

0 citations

Joel T. Dudley, Pawel K. Mazur, Natasha Flores, Dian Yang, Alec Palmerton +15 more

Convergence of NF-κB-mediated inflammatory and HNF4α-mediated metabolic signaling networks in age-related thymic involution (HEM4P.229)

The Journal of Immunology(2014)10.4049/jimmunol.192.supp.116.5

N/A

0DataRank · unranked

0 citations

Dullei Min, Shivkumar Venkatasubrahmanyam, Brile Chung, Yujun Yang, Christine Goetz +9 more

Machine Learning Algorithm to Improve Cohort Identification in Interstitial Lung Disease

C39. CARE AND EVALUATION OF PATIENTS WITH INTERSTITIAL LUNG DISEASE(2023)10.1164/ajrccm-conference.2023.207.1_meetingabstracts.a4974

N/A

0DataRank · unranked

0 citations

O. Gologorskaya, H.R. Collard, Erica Farrand, Oksana Gologorskaya, Hunter Mills +2 more

Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower

Nature Communications(2022)10.1038/s41467-022-32343-8

N/A

0DataRank · unranked

0 citations

PCAWG Drivers and Functional Interpretation Working Group, Federico Abascal, Samirkumar B. Amin, Pratiti Bandopadhayay, Rameen Beroukhim +1242 more

Supplementary Methods from A Drug Repositioning Approach Identifies Tricyclic Antidepressants as Inhibitors of Small Cell Lung Cancer and Other Neuroendocrine Tumors

(2023)10.1158/2159-8290.22528328

N/A

0DataRank · unranked

0 citations

Joel T. Dudley, Pawel K. Mazur, Natasha Flores, Dian Yang, Alec Palmerton +15 more

Supplementary Figure S2 from A Drug Repositioning Approach Identifies Tricyclic Antidepressants as Inhibitors of Small Cell Lung Cancer and Other Neuroendocrine Tumors

INDIGO (University of Illinois at Chicago)(2023)10.1158/2159-8290.22528349.v1

N/A

0DataRank · unranked

0 citations

Joel T. Dudley, Pawel K. Mazur, Natasha Flores, Dian Yang, Alec Palmerton +15 more

Data from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

(2023)10.1158/0008-5472.c.6504420.v1

N/A

0DataRank · unranked

0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

Using Cross-Validation to Find the Optimal Polynomial Model for Pediatric Anthropometric Time-Series Data

Pediatric Research(1999)10.1203/00006450-199904020-00513

N/A

0DataRank · unranked

0 citations

Isaac S. Kohane, Atul Janardhan Butte

Additional file 2 of Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients

Figshare(2022)10.6084/m9.figshare.18132783

N/A

0DataRank · unranked

0 citations

Boris Oskotsky, Atul Janardhan Butte, Zicheng Hu, Navchetan Kaur

Supplementary Figures 1 - 6 from A Meta-analysis of Lung Cancer Gene Expression Identifies PTK7 as a Survival Gene in Lung Adenocarcinoma

INDIGO (University of Illinois at Chicago)(2023)10.1158/0008-5472.22400414.v1

Top 100%

0DataRank

Top 100%0 citations

Purvesh Khatri, Pawel K. Mazur, Melanie Polin, Yanyan Zheng, Dedeepya Vaka +11 more

S1 from PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models

Figshare(2024)10.1158/0008-5472.26366795.v1

N/A

0DataRank · unranked

0 citations

Nathalie Conte, Giorgio Inghirami, Mark A. Murakami, Sebastian Brabetz, Zhiping Gu +57 more

Auto-MedCalc: Automated Biomarkers Discovery and Risk Score Generation with AI Agents

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.10.664265

N/A

0DataRank · unranked

0 citations

Sanchita Bhattacharya, Atul Janardhan Butte, Sirui Ding

Supplementary Methods from A Drug Repositioning Approach Identifies Tricyclic Antidepressants as Inhibitors of Small Cell Lung Cancer and Other Neuroendocrine Tumors

INDIGO (University of Illinois at Chicago)(2023)10.1158/2159-8290.22528328.v1

N/A

0DataRank · unranked

0 citations

Joel T. Dudley, Pawel K. Mazur, Natasha Flores, Dian Yang, Alec Palmerton +15 more

Supplementary Figure 2 from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

(2023)10.1158/0008-5472.22395909

N/A

0DataRank · unranked

0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

Additional file 6 of Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients

Figshare(2022)10.6084/m9.figshare.18132795

N/A

0DataRank · unranked

0 citations

Boris Oskotsky, Atul Janardhan Butte, Zicheng Hu, Navchetan Kaur

Predictability and Stability Testing to Assess Clinical Decision Instrument Performance for Children After Blunt Torso Trauma

medRxiv(2022)10.1101/2022.03.08.22270944

N/A

0DataRank · unranked

0 citations

Chandan Singh, Gabriel Devlin, Newton Addo, Christian J. Streck, James F. Holmes +7 more

Datasets supporting analytical workflow of: Chronic Acid Suppression and Social Determinants of COVID-19 Infection

Figshare(2020)10.6084/m9.figshare.13380356

Top 100%

0DataRank

Top 100%0 citations

Anna L. Silverman, Saroja Bangaru, Douglas V. Arneson, Sonya Dasharathy, Nghia Nguyen +7 more

Contributors

Genomic and Personalized Medicine(2009)10.1016/b978-0-12-369420-1.00122-0

N/A

0DataRank · unranked

0 citations

Matthew L. Anderson, Felicita Andreotti, Brian H. Annex, Anthony Antonellis, Dmitri Artemov +272 more

Quantifying Variation in Treatment Utilization for Type 2 Diabetes Across Five Major University of California Health Systems

(2021)10.2337/figshare.13549142

N/A

0DataRank · unranked

0 citations

Valy Fontil, Suneil K. Koliwad, Ayan Patel, Atul Janardhan Butte, Thomas Peterson +2 more

How the immune system ‘Grows up’: evidence supporting the existence of a layered immune system

Journal of Reproductive Immunology(2010)10.1016/j.jri.2010.06.031

N/A

0DataRank · unranked

0 citations

T.D. Burt, J. Rivera, S.A. Galkina, C.A. Stoddart, J.M. McCune +10 more

Supplementary Table 1 from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

(2023)10.1158/0008-5472.22395888

N/A

0DataRank · unranked

0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

Mining transcriptomics and clinical data reveals ACE2 expression modulators and identifies cardiomyopathy as a risk factor for mortality in COVID-19 patients

medRxiv(2020)10.1101/2020.10.20.20216150

N/A

0DataRank · unranked

0 citations

Boris Oskotsky, Atul Janardhan Butte, Zicheng Hu, Navchetan Kaur

DTMBIO 2013

Proceedings of the 22nd ACM international conference on Information & Knowledge Management(2013)10.1145/2505515.2505814

N/A

0DataRank · unranked

0 citations

Doheon Lee, Hua Xu, Min Song, Atul Janardhan Butte

Additional file 4: of Widespread parainflammation in human cancer

Figshare(2016)10.6084/m9.figshare.c.3614108_d8

Top 100%

0DataRank

Top 100%0 citations

Audrey Lasry, Adar Zinger, Moshe Biton, Eli Pikarsky, Asaf Hellman +3 more

Additional file 3 of Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients

Figshare(2022)10.6084/m9.figshare.18132786

N/A

0DataRank · unranked

0 citations

Boris Oskotsky, Atul Janardhan Butte, Zicheng Hu, Navchetan Kaur

331: Global assessment of B cell alloimmunity using microarrays of 5000 human proteins

Biology of Blood and Marrow Transplantation(2007)10.1016/j.bbmt.2006.12.336

N/A

0DataRank · unranked

0 citations

L. Weintraub, D. Miklos, Persis P. Wadia, Marc Coram, Lauren Weintraub +2 more

103 Computational Prediction and Experimental Validation of FABP-1 as a Putative Biomarker for Pancreatic Adenocarcinoma: A Novel Approach to Biomarker Discovery for Gastrointestinal Disorders

Gastroenterology(2010)10.1016/s0016-5085(10)60086-8

N/A

0DataRank · unranked

0 citations

Atul Janardhan Butte, Kelli D Montgomery, Reetesh K. Pai, Joel T. Dudley, Pankaj J. Pasricha +1 more

Defining incidence and complications of fibrolamellar liver cancer through tiered computational analysis of multiple clinical data types.

Research Square(2022)10.21203/rs.3.rs-2082118/v1

N/A

0DataRank · unranked

0 citations

Travis Zack, Jennifer Wild, Samantha Maisel, Amin Yaqubie, Jennifer J. Knox +7 more

Signature immunologique de la gonarthrose : rôle des lymphocytes T régulateurs dans la douleur. Résultats de l’étude TRANSIMMUNOM

Revue du Rhumatisme(2024)10.1016/j.rhum.2024.10.427

N/A

0DataRank · unranked

0 citations

J. Dubois, M. Marco Savaldor, P. Stys, M. Barbier, C. Ribet +25 more

Supplementary Figure Legends 1-6, Table Legends 1-6 from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

Figshare(2023)10.1158/0008-5472.22395894.v1

N/A

0DataRank · unranked

0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

Data from A Drug Repositioning Approach Identifies Tricyclic Antidepressants as Inhibitors of Small Cell Lung Cancer and Other Neuroendocrine Tumors

(2023)10.1158/2159-8290.c.6545696

N/A

0DataRank · unranked

0 citations

Joel T. Dudley, Pawel K. Mazur, Natasha Flores, Dian Yang, Alec Palmerton +15 more

Supplementary Figure S5 from A Drug Repositioning Approach Identifies Tricyclic Antidepressants as Inhibitors of Small Cell Lung Cancer and Other Neuroendocrine Tumors

(2023)10.1158/2159-8290.22528337.v1

N/A

0DataRank · unranked

0 citations

Joel T. Dudley, Pawel K. Mazur, Natasha Flores, Dian Yang, Alec Palmerton +15 more

Immunological response in normal healthy twins across age

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology(2010)10.1145/1854776.1854904

N/A

0DataRank · unranked

0 citations

Gary E. Swan, Martin S. Angst, Atul Janardhan Butte, Mark M. Davis, Shai S. Shen-Orr +4 more

Development and Validation of a Prediction Model for Risk of Death in Kidney Transplant Recipients (Mortality Box)

American Journal of Transplantation(2025)10.1016/j.ajt.2025.07.130

N/A

0DataRank · unranked

0 citations

M. Naesens, S. Meziyerh, J. Kers, D. Van Der Helm, A. De Vries +39 more

Supplementary Figures 1 - 6 from A Meta-analysis of Lung Cancer Gene Expression Identifies PTK7 as a Survival Gene in Lung Adenocarcinoma

(2023)10.1158/0008-5472.22400414

Top 100%

0DataRank

Top 100%0 citations

Purvesh Khatri, Pawel K. Mazur, Melanie Polin, Yanyan Zheng, Dedeepya Vaka +11 more

POS0792 IMMUNOLOGICAL PROFILING OF PAIN IN KNEE OSTEOARTHRITIS: TREG CELLS AS POTENTIAL NEW KEY PLAYERS IN SYMPTOMATIC KNEE OSTEOARTHRITIS

Annals of the Rheumatic Diseases(2024)10.1136/annrheumdis-2024-eular.4168

N/A

0DataRank · unranked

0 citations

J. Dubois, M. Rosenzwajg, M. Barbier, Anne‐Françoise Roux, C. Ribet +28 more

Additional file 3: of xCell: digitally portraying the tissue cellular heterogeneity landscape

Figshare(2017)10.6084/m9.figshare.c.3931732_d3

Top 100%

0DataRank

Top 100%0 citations

Zicheng Hu, Atul Janardhan Butte, Dvir Aran

Supplementary Figure S3 from A Drug Repositioning Approach Identifies Tricyclic Antidepressants as Inhibitors of Small Cell Lung Cancer and Other Neuroendocrine Tumors

(2023)10.1158/2159-8290.22528346

N/A

0DataRank · unranked

0 citations

Joel T. Dudley, Pawel K. Mazur, Natasha Flores, Dian Yang, Alec Palmerton +15 more

Selected proceedings of the First Summit on Translational Bioinformatics 2008

BMC Bioinformatics(2009)10.1186/1471-2105-10-s2-i1

N/A

0DataRank · unranked

0 citations

Indra Neil Sarkar, Marco F. Ramoni, Yves A. Lussier, Olga G. Troyanskaya, Atul Janardhan Butte

Contributors

Genomic and Personalized Medicine(2013)10.1016/b978-0-12-382227-7.00124-5

N/A

0DataRank · unranked

0 citations

Minhaz Uddin Ahmed, Sun Hee Ahn, R. Rand Allingham, Jude Alsarraj, Matthew L. Anderson +228 more

Additional file 4 of Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients

Figshare(2022)10.6084/m9.figshare.18132789

N/A

0DataRank · unranked

0 citations

Boris Oskotsky, Atul Janardhan Butte, Zicheng Hu, Navchetan Kaur

Translating a trillion points of data into therapies, diagnostics, and new insights into disease

Proceedings of the 7th international workshop on Data and text mining in biomedical informatics(2013)10.1145/2512089.2512102

N/A

0DataRank · unranked

0 citations

Atul Janardhan Butte

Additional file 8: of Widespread parainflammation in human cancer

Figshare(2016)10.6084/m9.figshare.c.3614108_d4

N/A

0DataRank · unranked

0 citations

Audrey Lasry, Adar Zinger, Moshe Biton, Eli Pikarsky, Asaf Hellman +3 more

Extracting cell-type-specific gene expression differences from complex tissues (144.30)

The Journal of Immunology(2010)10.4049/jimmunol.184.supp.144.30

N/A

0DataRank · unranked

0 citations

Robert Tibshirani, Purvesh Khatri, Alexander Gaidarski, Frank Staedtler, Nicholas Perry +8 more

Supplementary Table 6 from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

Figshare(2023)10.1158/0008-5472.22395873.v1

Top 100%

0DataRank

Top 100%0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

Additional file 9: of Achieving high-sensitivity for clinical applications using augmented exome sequencing

Figshare(2015)10.6084/m9.figshare.c.3641885_d7

Top 100%

0DataRank

Top 100%0 citations

Jason Harris, Nan Leng, Gábor Bartha, Deanna M. Church, Shujun Luo +20 more

RWD92 Disparities Associated With CAR-T Therapy Access for Multiple Myeloma Patients

Value in Health(2024)10.1016/j.jval.2024.10.3650

N/A

0DataRank · unranked

0 citations

I. Chen, Travis Zack, Atul Janardhan Butte, J. Davidson

Data from PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models

(2023)10.1158/0008-5472.c.6510291.v1

Top 100%

0DataRank

Top 100%0 citations

Nathalie Conte, Giorgio Inghirami, Mark A. Murakami, Sebastian Brabetz, Zhiping Gu +59 more

A computer-simulated “wet” laboratory

Biochemical Education(1992)10.1016/0307-4412(92)90051-m

N/A

0DataRank · unranked

0 citations

Atul Janardhan Butte, Boris Rotman

Supplementary Figure 1 from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

(2023)10.1158/0008-5472.22395912

N/A

0DataRank · unranked

0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

Assessment of Large Language Models for Enhancing Diabetologist-Developed Personalized Treatment Plans in Complex Type 2 Diabetes

Figshare(2025)10.2337/figshare.29464577.v1

N/A

0DataRank · unranked

0 citations

Madhumita Sushil, Brenda Y. Miao, Sarah Kim, Umesh Masharani, Gregory Ku +7 more

Supplementary Table 3 from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

(2023)10.1158/0008-5472.22395882

N/A

0DataRank · unranked

0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

Supplementary Tables 1 - 7 from A Meta-analysis of Lung Cancer Gene Expression Identifies PTK7 as a Survival Gene in Lung Adenocarcinoma

(2023)10.1158/0008-5472.22400408

Top 100%

0DataRank

Top 100%0 citations

Purvesh Khatri, Pawel K. Mazur, Melanie Polin, Yanyan Zheng, Dedeepya Vaka +11 more

Exploring the Past and Current Landscape of Biomarker-Driven Clinical Trials Through Large Language Models

JCO Clinical Cancer Informatics(2026)10.1200/cci-25-00028

N/A

0DataRank · unranked

0 citations

Evan Passalacqua, Erik L. Bao, Travis Zack, Brenda Y. Miao, Atul Janardhan Butte +1 more

Association of Chronic Acid Suppression and Social Determinants of Health with COVID-19 Infection

medRxiv(2021)10.1101/2021.01.10.21249545

N/A

0DataRank · unranked

0 citations

Anna L. Silverman, Saroja Bangaru, Douglas V. Arneson, Sonya Dasharathy, Nghia Nguyen +7 more

The Reporting Quality of Machine Learning Studies on Pediatric Diabetes Mellitus: Systematic Review (Preprint)

(2023)10.2196/preprints.47430

N/A

0DataRank · unranked

0 citations

Gábor Kertész, László Gulácsi, János Tibor Czere, Áron Hölgyesi, Hossein Motahari Nezhad +5 more

Additional file 9: of Widespread parainflammation in human cancer

Figshare(2016)10.6084/m9.figshare.c.3614108_d9

Top 100%

0DataRank

Top 100%0 citations

Audrey Lasry, Adar Zinger, Moshe Biton, Eli Pikarsky, Asaf Hellman +3 more

Additional file 8 of Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients

Figshare(2022)10.6084/m9.figshare.18132801

N/A

0DataRank · unranked

0 citations

Boris Oskotsky, Atul Janardhan Butte, Zicheng Hu, Navchetan Kaur

Supplementary Figure S1 from A Drug Repositioning Approach Identifies Tricyclic Antidepressants as Inhibitors of Small Cell Lung Cancer and Other Neuroendocrine Tumors

INDIGO (University of Illinois at Chicago)(2023)10.1158/2159-8290.22528352.v1

N/A

0DataRank · unranked

0 citations

Joel T. Dudley, Pawel K. Mazur, Natasha Flores, Dian Yang, Alec Palmerton +15 more

Global Assessment of B Cell Alloimmunity Using Human Protein Microarrays

Clinical Immunology(2007)10.1016/j.clim.2007.03.371

N/A

0DataRank · unranked

0 citations

Marc Coram, Marina Sirota, David B. Miklos, Atul Janardhan Butte, Persis P. Wadia

Identification of serum protein biomarkers for small cell lung cancer.

Journal of Clinical Oncology(2011)10.1200/jco.2011.29.15_suppl.e21005

N/A

0DataRank · unranked

0 citations

P. Khatri, K. Park, J. Sage, Joel T. Dudley, John Sage +2 more

Supplementary Figure 6 from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

(2023)10.1158/0008-5472.22395897

N/A

0DataRank · unranked

0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

Additional file 7: of Widespread parainflammation in human cancer

Figshare(2016)10.6084/m9.figshare.c.3614108_d2

Top 100%

0DataRank

Top 100%0 citations

Audrey Lasry, Adar Zinger, Moshe Biton, Eli Pikarsky, Asaf Hellman +3 more

Supplementary Video S1 from PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models

Figshare(2024)10.1158/0008-5472.26326771.v1

N/A

0DataRank · unranked

0 citations

Nathalie Conte, Giorgio Inghirami, Mark A. Murakami, Sebastian Brabetz, Zhiping Gu +58 more

#955 Real-world validation of the mortality box score to predict death following kidney transplantation: an international study

Nephrology Dialysis Transplantation(2024)10.1093/ndt/gfae069.096

N/A

0DataRank · unranked

0 citations

Agathe Truchot, Gillian Divard, Charlotte Debiais, Marc Raynaud, Alexandre Loupy +3 more

Tu1834 PERSONALIZING TREATMENT SELECTION IN CROHN'S DISEASE: A META-ANALYSIS OF INDIVIDUAL PARTICIPANT DATA FROM FIFTEEN RANDOMIZED CONTROLLED TRIALS

Gastroenterology(2024)10.1016/s0016-5085(24)03735-1

N/A

0DataRank · unranked

0 citations

Vignesh G. Ravindranath, Douglas V. Arneson, Arman Mosenia, Shan Wang, Atul Janardhan Butte +1 more

MOLECULAR BIOINFORMATICS FOR DISEASE: PROTEIN INTERACTIONS AND PHENOMICS – Session Introduction

Biocomputing 2008(2007)10.1142/9789812776136_0023

N/A

0DataRank · unranked

0 citations

YOUNGHEE LEE, PREDRAG RADIVOJAC, YANAY OFRAN, MARCO PUNTA, Atul Janardhan Butte +2 more

Repurposing the atypical antidepressant trazodone for atherosclerotic cardiovascular disease

Research Square(2021)10.21203/rs.3.rs-567817/v1

N/A

0DataRank · unranked

0 citations

Jagat Narula, Khader Shameer, Farhan Chaudhry, Alexandre Yahi, Nayaab Khan +38 more

Supplementary Figure 3 from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

(2023)10.1158/0008-5472.22395906

N/A

0DataRank · unranked

0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

Supplementary Figure 3 from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

Figshare(2023)10.1158/0008-5472.22395906.v1

N/A

0DataRank · unranked

0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

Mammary ductal epithelium controls cold-induced adipocyte thermogenesis

Research Square(2022)10.21203/rs.3.rs-1179254/v1

N/A

0DataRank · unranked

0 citations

Douglas V. Arneson, Alexandra Alvarsson, Karthickeyan Krishnan, Alessia Centzone, Sanil Patel +12 more

Translational informatics of population health: How large biomolecular and clinical datasets unite

Biocomputing 2019(2018)10.1142/9789813279827_0043

N/A

0DataRank · unranked

0 citations

Atul Janardhan Butte, Haiquan Li, Rong Chen, Jason H. Moore, Yves A. Lussier

Utilisation du machine learning en recherche sur l’arthrose: une revue systémique de la littérature

Revue du Rhumatisme(2021)10.1016/j.rhum.2021.10.483

N/A

0DataRank · unranked

0 citations

V. Pedoia, F. Berenbaum, D. Klatzmann, J. Sellam, Marie Binvignat +6 more

Additional file 2 of Deep learning from multiple experts improves identification of amyloid neuropathologies

Open MIND(2022)10.6084/m9.figshare.19681766

Top 100%

0DataRank

Top 100%0 citations

Ziqi Tang, Nicholas C. Mew, Sakshi Das, Justin Athey, Kirsty E. McAleese +8 more

Supplementary Figure 1 from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

Figshare(2023)10.1158/0008-5472.22395912.v1

N/A

0DataRank · unranked

0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

Cross-institution text mining to uncover clinical associations: a case study relating social factors and code status in intensive care medicine

arXiv (Cornell University)(2023)10.48550/arxiv.2301.06570

N/A

0DataRank · unranked

0 citations

Atul Janardhan Butte, Ewoud Schuit, Maarten van Smeden, Artuur M. Leeuwenberg, Madhumita Sushil

Integrating expert knowledge into large language models improves performance for psychiatric reasoning and diagnosis

Psychiatry Research(2026)10.1016/j.psychres.2025.116844

N/A

0DataRank · unranked

0 citations

Kaitlin E Hanss, Andrew J M Halls, Andrew D. Krystal, Daniel F Becker, Anne L. Glowinski +3 more

Additional file 8: of Achieving high-sensitivity for clinical applications using augmented exome sequencing

Figshare(2015)10.6084/m9.figshare.c.3641885_d12

Top 100%

0DataRank

Top 100%0 citations

Jason Harris, Nan Leng, Gábor Bartha, Deanna M. Church, Shujun Luo +20 more

Variation in the Human Immune System Is Largely Driven by Non-Heritable Influences

UNC Libraries(2020)10.17615/e3s3-zc17

N/A

0DataRank · unranked

0 citations

the Immunological Genome Project Consortium, Tianxiang Gao, Sanchita Bhattacharya, Cesar J.Lopez Angel, David Furman +7 more

Peer Review #1 of "Finding melanoma drugs through a probabilistic knowledge graph (v0.1)"

(2017)10.7287/peerj-cs.106v0.1/reviews/1

N/A

0DataRank · unranked

0 citations

Michel J. Dumontier, Rui Yan, Sylvia He, Jonathan S. Dordick, Deborah L. McGuinness +572 more

Opal: an implementation science tool for machine learning clinical decision support in anesthesia

Journal of Clinical Monitoring and Computing(2021)10.1007/s10877-021-00774-1

N/A

0DataRank · unranked

14 citations

Andrew Wong, Linshanshan Wang, Manu Chopra, Wudi Fan, Alan J. Lin +9 more

Five-year pediatric use of a digital wearable fitness device: lessons from a pilot case study

JAMIA Open(2021)10.1093/jamiaopen/ooab054

N/A

0DataRank · unranked

5 citations

Amir Bahmani, Atul Janardhan Butte, Xiao Li, Michael P. Snyder, Syzygy Butte

Assessing Clinical Outcomes in a Data-Rich World—A Reality Check on Real-World Data

JAMA Network Open(2021)10.1001/jamanetworkopen.2021.17826

N/A

0DataRank · unranked

3 citations

Atul Janardhan Butte, Julian C. Hong

Early immune responses have long-term associations with clinical, virologic, and immunologic outcomes in patients with COVID-19

medRxiv(2021)10.1101/2021.08.27.21262687

N/A

0DataRank · unranked

4 citations

Kattria van der Ploeg, Saborni Chakraborty, Prabhu S. Arunachalam, Diego Martinez Mori, Karen B. Jacobson +18 more

Deciphering Cell-types and Gene Signatures Associated with Disease Activity in Rheumatoid Arthritis using Single Cell RNA-sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.05.560352

N/A

0DataRank · unranked

0 citations

B. Y. Miao, C. Wibrand, M.M. Yang, D. Rychkov, E. Flynn +31 more

Paging the Clinical Informatics Community: Respond STAT to Dobbs v. Jackson's Women's Health Organization

Applied Clinical Informatics(2022)10.1055/a-2000-7590

N/A

0DataRank · unranked

4 citations

Akshay Ravi, Benjamin Weia, Jos Aarts, Hasan B. Ahmad, Ellen Araj +82 more

Early immune responses have long-term associations with clinical, virologic, and immunologic outcomes in patients with COVID-19

Research Square(2022)10.21203/rs.3.rs-847082/v1

N/A

0DataRank · unranked

8 citations

Kattria van der Ploeg, Saborni Chakraborty, Prabhu S. Arunachalam, Diego AM Mori, Karen B. Jacobson +18 more

A method for estimating causal effects from heterogeneous clinical trials without a common control group using sequential regression and simulation: an individual participant data meta-analysis and validation study

medRxiv(2022)10.1101/2022.10.07.22280801

N/A

0DataRank · unranked

1 citations

Vignesh G. Ravindranath, Douglas V. Arneson, Arman Mosenia, Atul Janardhan Butte, Shan Wang +1 more

Toward a causal model of chronic back pain: Challenges and opportunities

Frontiers in Computational Neuroscience(2023)10.3389/fncom.2022.1017412

N/A

0DataRank · unranked

11 citations

Rohit Vashisht, Anoop R. Galivanche, Constance Hadjadj, Saam Morshed, Atul Janardhan Butte +3 more

Machine-Learning Algorithm to Improve Cohort Identification in Interstitial Lung Disease

American Journal of Respiratory and Critical Care Medicine(2023)10.1164/rccm.202211-2092le

N/A

0DataRank · unranked

7 citations

Oksana Gologorskaya, Hunter Mills, Lakshmi Radhakrishnan, Harold R. Collard, Atul Janardhan Butte +1 more

S936 Optimizing Treatment Selection in Crohn’s Disease Using Patient-Specific Features: An Individual Participant Data Meta-Analysis of Fifteen Randomized Controlled Trials

American Journal of Gastroenterology(2023)10.14309/01.ajg.0000953384.20574.a3

N/A

0DataRank · unranked

0 citations

Douglas V. Arneson, Arman Mosenia, Shan Wang, Vivek Ashok Rudrapatna, Vignesh G. Ravindranath +1 more

Deep learning from multiple experts improves identification of amyloid neuropathologies

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.12.435050

N/A

0DataRank · unranked

0 citations

Ziqi Tang, Nicholas C. Mew, Sakshi Das, Justin Athey, Kirsty E. McAleese +8 more

Assessment of aortic valve function in over 47,000 people using deep learning

European Heart Journal(2023)10.1093/eurheartj/ehad655.1708

N/A

0DataRank · unranked

0 citations

Joel Rämö, Can Hou, Sean J. Jurgens, Victor Nauffal, Jonathan W. Cunningham +9 more

Topic modeling on clinical social work notes for exploring social determinants of health factors

JAMIA Open(2024)10.1093/jamiaopen/ooad112

N/A

0DataRank · unranked

26 citations

Travis Zack, Christopher Y. K. Williams, Madhumita Sushil, Atul Janardhan Butte, Shenghuan Sun

Predictive Modeling of Drug‐Related Adverse Events with Real‐World Data: A Case Study of Linezolid Hematologic Outcomes

Clinical Pharmacology & Therapeutics(2024)10.1002/cpt.3201

N/A

0DataRank · unranked

7 citations

Sarah B. Doernberg, Travis Zack, Atul Janardhan Butte, Kendra K. Radtke, Anu Patel

Accurate, Robust, and Scalable Machine Abstraction of Mayo Endoscopic Subscores From Colonoscopy Reports

Inflammatory Bowel Diseases(2024)10.1093/ibd/izae068

N/A

0DataRank · unranked

5 citations

Balu Bhasuran, Arman Mosenia, Fatema Yasini, Gokul Ramasamy, Imon Banerjee +7 more

An AI model classifies risks of early relapse post–CAR T-cell therapy in a multicenter real-world population with DLBCL

Blood Advances(2025)10.1182/bloodadvances.2025016375

N/A

0DataRank · unranked

3 citations

Krishna V. Komanduri, Debajyoti Datta, Ayan R. Patel, Barbee Whitaker, Artur Belov +7 more

Supplementary Figure 5 from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

(2023)10.1158/0008-5472.22395900

N/A

0DataRank · unranked

0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

New Threshold for Defining Mild Aortic Stenosis Derived From Velocity-Encoded MRI in 60,000 Individuals

Journal of the American College of Cardiology(2025)10.1016/j.jacc.2025.01.035

N/A

0DataRank · unranked

5 citations

Joel Rämö, David Playford, Geoff Strange, Cody R. Hou, Sean J. Jurgens +13 more

Real-world predictors of adverse clinical outcomes in pancreatic cancer using a machine-learning framework.

Journal of Clinical Oncology(2025)10.1200/jco.2025.43.16_suppl.4186

N/A

0DataRank · unranked

0 citations

Travis Zack, Atul Janardhan Butte, Akanksha Dua

Additional file 5: of Widespread parainflammation in human cancer

Figshare(2016)10.6084/m9.figshare.c.3614108_d1

Top 100%

0DataRank

Top 100%0 citations

Audrey Lasry, Adar Zinger, Moshe Biton, Eli Pikarsky, Asaf Hellman +3 more

Supplementary Figure 4 from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

(2023)10.1158/0008-5472.22395903

N/A

0DataRank · unranked

0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

Data from PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models

(2024)10.1158/0008-5472.c.6510291

Top 100%

0DataRank

Top 100%0 citations

Nathalie Conte, Giorgio Inghirami, Mark A. Murakami, Sebastian Brabetz, Zhiping Gu +58 more

PP4.14 – 00024 HIV RNA+ cells from ART-suppressed PWH exhibit transcriptional profiles distinct from those during active viremia

Journal of Virus Eradication(2024)10.1016/j.jve.2024.100501

N/A

0DataRank · unranked

0 citations

S. Lee, Julie Frouard, Sushama Telwatte, Xiaoyu Luo, Natalie Elphick +9 more

Gene PSEVs V1

Zenodo (CERN European Organization for Nuclear Research)(2020)10.5281/zenodo.4404617

N/A

0DataRank · unranked

0 citations

Sergio E. Baranzini, Atul Janardhan Butte, Charlotte A. Nelson

Supplementary Figure S3 from A Drug Repositioning Approach Identifies Tricyclic Antidepressants as Inhibitors of Small Cell Lung Cancer and Other Neuroendocrine Tumors

INDIGO (University of Illinois at Chicago)(2023)10.1158/2159-8290.22528346.v1

N/A

0DataRank · unranked

0 citations

Joel T. Dudley, Pawel K. Mazur, Natasha Flores, Dian Yang, Alec Palmerton +15 more

Additional file 1: of Widespread parainflammation in human cancer

Figshare(2016)10.6084/m9.figshare.c.3614108_d6

Top 100%

0DataRank

Top 100%0 citations

Audrey Lasry, Adar Zinger, Moshe Biton, Eli Pikarsky, Asaf Hellman +3 more

Supplementary Figure S5 from A Drug Repositioning Approach Identifies Tricyclic Antidepressants as Inhibitors of Small Cell Lung Cancer and Other Neuroendocrine Tumors

(2023)10.1158/2159-8290.22528337

N/A

0DataRank · unranked

0 citations

Joel T. Dudley, Pawel K. Mazur, Natasha Flores, Dian Yang, Alec Palmerton +15 more

Supplementary Video S1 from PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models

(2024)10.1158/0008-5472.26366789

N/A

0DataRank · unranked

0 citations

Nathalie Conte, Giorgio Inghirami, Mark A. Murakami, Sebastian Brabetz, Zhiping Gu +57 more

Immune-related trends in bio-medical literature (CCR3P.208)

The Journal of Immunology(2015)10.4049/jimmunol.194.supp.49.9

N/A

0DataRank · unranked

0 citations

Sanchita Bhattacharya, Atul Janardhan Butte, Nophar Geifman

Supplementary Figure S4 from A Drug Repositioning Approach Identifies Tricyclic Antidepressants as Inhibitors of Small Cell Lung Cancer and Other Neuroendocrine Tumors

(2023)10.1158/2159-8290.22528343

N/A

0DataRank · unranked

0 citations

Joel T. Dudley, Pawel K. Mazur, Natasha Flores, Dian Yang, Alec Palmerton +15 more

S1 from PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models

Figshare(2024)10.1158/0008-5472.26326774.v1

N/A

0DataRank · unranked

0 citations

Nathalie Conte, Giorgio Inghirami, Mark A. Murakami, Sebastian Brabetz, Zhiping Gu +57 more

Assessing real-world outcomes in precision oncology by linking clinical genomic testing to electronic medical records.

Journal of Clinical Oncology(2019)10.1200/jco.2019.37.15_suppl.e18091

N/A

0DataRank · unranked

0 citations

Theodore C. Goldstein, Atul Janardhan Butte, Debajyoti Datta

Real-world utilization of SARS-CoV-2 serological testing in RNA positive patients across the United States

PLOS ONE(2023)10.1371/journal.pone.0281365

N/A

0DataRank · unranked

0 citations

Natalie E. Sheils, Anthony M. Louder, Elizabeth H. Eldridge, Nancy D. Lin, Benjamin D. Pollock +35 more

Additional file 2: of Achieving high-sensitivity for clinical applications using augmented exome sequencing

Figshare(2015)10.6084/m9.figshare.c.3641885_d11

Top 100%

0DataRank

Top 100%0 citations

Jason Harris, Nan Leng, Gábor Bartha, Deanna M. Church, Shujun Luo +20 more

Supplementary Table S1 from A Drug Repositioning Approach Identifies Tricyclic Antidepressants as Inhibitors of Small Cell Lung Cancer and Other Neuroendocrine Tumors

(2023)10.1158/2159-8290.22528325

N/A

0DataRank · unranked

0 citations

Joel T. Dudley, Pawel K. Mazur, Natasha Flores, Dian Yang, Alec Palmerton +15 more

Supplementary Figure 5 from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

Figshare(2023)10.1158/0008-5472.22395900.v1

N/A

0DataRank · unranked

0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

Revealing the impact of social circumstances on the selection of cancer therapy through natural language processing of social work notes

arXiv (Cornell University)(2023)10.48550/arxiv.2306.09877

N/A

0DataRank · unranked

0 citations

Travis Zack, Christopher Y. K. Williams, Atul Janardhan Butte, Madhumita Sushil, Shenghuan Sun

Identification d’une signature en Single Cell transcriptomique associée à l’activité de la maladie dans la polyarthrite rhumatoïde

Revue du Rhumatisme(2023)10.1016/j.rhum.2023.10.039

N/A

0DataRank · unranked

0 citations

C. Wibrand, M. Yang, D. Rychkov, E. Flynn, J. Nititham +31 more

Contributors

Essentials of Genomic and Personalized Medicine(2010)10.1016/b978-0-12-374934-5.00076-3

N/A

0DataRank · unranked

0 citations

Peter J. Barnes, Ivor J. Benjamin, Mark Boguski, Brigitta Bondy, Roger E. Breitbart +64 more

Supplementary Table 4 from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

(2023)10.1158/0008-5472.22395879

N/A

0DataRank · unranked

0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

Gene PSEVs V1

Zenodo (CERN European Organization for Nuclear Research)(2020)10.5281/zenodo.4404618

N/A

0DataRank · unranked

0 citations

Sergio E. Baranzini, Atul Janardhan Butte, Charlotte A. Nelson

Additional file 1: of xCell: digitally portraying the tissue cellular heterogeneity landscape

Figshare(2017)10.6084/m9.figshare.c.3931732_d1

Top 100%

0DataRank

Top 100%0 citations

Zicheng Hu, Atul Janardhan Butte, Dvir Aran

Supplementary Methods from Cross-Species Functional Analysis of Cancer-Associated Fibroblasts Identifies a Critical Role for CLCF1 and IL-6 in Non–Small Cell Lung Cancer In Vivo

(2023)10.1158/0008-5472.22395891

N/A

0DataRank · unranked

0 citations

Leanne C. Sayles, Dedeepya Vaka, Purvesh Khatri, Olivier Gevaert, Ron Chen +14 more

Bioinformatics in Functional Genomics

Encyclopedia of Biostatistics(2005)10.1002/0470011815.b2a05099

N/A

0DataRank · unranked

0 citations

Atul Janardhan Butte, Isaac S. Kohane

F.40. Quantitative Assessment of the Goodness-of-fit of Mouse Models to Human Diseases

Clinical Immunology(2009)10.1016/j.clim.2009.03.305

N/A

0DataRank · unranked

0 citations

Mark Davis, Shai S. Shen-Orr, Atul Janardhan Butte, Mark M. Davis

HPR101 Evaluation of Social Determinants of Health (SDOH) on Type 2 Diabetes Treatment Selection and Disease Severity

Value in Health(2023)10.1016/j.jval.2023.03.1248

N/A

0DataRank · unranked

0 citations

Jaime A. Davidson, Rohit Vashisht, Atul Janardhan Butte, J. Davidson

Atul Janardhan Butte

Indexed papers

Top data-sharing exemplar

Papers