Jonathan K. Pritchard

Also affiliated with Stanford University

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

21.4Author DataRank

Indexed papers

8in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

Genome Research(2010)10.1101/gr.112623.110

Top 2%

7.7DataRank

Top 2%588 citations

Jacob F. Degner, Athma A. Pai, Daniel J. Gaffney, Yoav Gilad, Jonathan K. Pritchard +1 more

Papers

Driven by 71 papers — median percentile 97. Top paper: “Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression”.

Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression

Nature Genetics(2021)10.1038/s41588-021-00913-z

N/A

11.2DataRank · unranked

2226 citations

Annique Claringbould, Harm-Jan Westra, Marc Jan Bonder, Patrick Deelen, Biao Zeng +89 more

Correction: Corrigendum: Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases

Scientific Reports(2016)10.1038/srep19384

N/A

10.4DataRank · unranked

722 citations

Tao Huang, Francesca Petralia, Quan Long, Bin Zhang, Carmen Argmann +129 more

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

Genome Research(2010)10.1101/gr.112623.110

Top 2%

7.7DataRank

Top 2%588 citations

Jacob F. Degner, Athma A. Pai, Daniel J. Gaffney, Yoav Gilad, Jonathan K. Pritchard +1 more

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

The Genotype-Tissue Expression (GTEx) project

Nature Genetics(2013)10.1038/ng.2653

Top 3%

6.0DataRank

Top 3%10097 citations

Mike Salvatore, Rebecca Phillips, Bernadette Mestichelli, Saboor Shad, Richard Hasz +144 more

Evidence for Weak Selective Constraint on Human Gene Expression

Genetics(2018)10.1534/genetics.118.301833

N/A

2.7DataRank · unranked

77 citations

Ziyue Gao, Arbel Harpak, Xun Lan, Jonathan K. Pritchard, Emily C. Glassberg

Shared heritability of human face and brain shape

Nature Genetics(2021)10.1038/s41588-021-00827-w

N/A

2.4DataRank · unranked

110 citations

Yoeri Sleyp, Hanne Hoskens, Karlijne Indencleef, Jeffrey P. Spence, Rose Bruffaerts +14 more

Inference of Population Structure Using Multilocus Genotype Data

Genetics(2000)10.1093/genetics/155.2.945

N/A

1.6DataRank · unranked

34058 citations

Matthew Stephens, Peter Donnelly, Jonathan K. Pritchard

Inference of Population Structure Using Multilocus Genotype Data: Linked Loci and Correlated Allele Frequencies

Genetics(2003)10.1093/genetics/164.4.1567

N/A

1.3DataRank · unranked

8028 citations

Matthew Stephens, Jonathan K. Pritchard, Daniel Falush

Integrative analysis of metabolite GWAS illuminates the molecular basis of pleiotropy and genetic correlation

eLife(2022)10.7554/elife.79348

Top 15%

1.3DataRank

Top 15%45 citations

Nicholas A. Sinnott-Armstrong, Anna Cichońska, Heli Julkunen, Eric B. Fauman, Peter Würtz +2 more

A genome-wide genetic screen uncovers determinants of human pigmentation

Science(2023)10.1126/science.ade6289

N/A

1.3DataRank · unranked

57 citations

Tomek Swigut, Jaaved Mohammed, Sahin Naqvi, Martin Arreola, Josh Tycko +5 more

A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes

Science(2012)10.1126/science.1215040

N/A

1.1DataRank · unranked

1321 citations

Suganthi Balasubramanian, Michael G. FitzGerald, Ni Huang, James Morris, Fred R. Hirsch +54 more

Genetics of 35 blood and urine biomarkers in the UK Biobank

Nature Genetics(2021)10.1038/s41588-020-00757-z

N/A

1.0DataRank · unranked

806 citations

Yosuke Tanigawa, David Amar, Nina Mars, Christian Benner, Matthew Aguirre +19 more

DNase I sensitivity QTLs are a major determinant of human expression variation

Nature(2012)10.1038/nature10808

N/A

0.984DataRank · unranked

704 citations

Athma A. Pai, Roger Pique-Regi, Jean-Baptiste Veyrieras, Daniel J. Gaffney, Joseph K. Pickrell +10 more

Abundant contribution of short tandem repeats to gene expression variation in humans

Nature Genetics(2015)10.1038/ng.3461

N/A

0.928DataRank · unranked

485 citations

Thomas Willems, Audrey Guilmatre, Haoyang Zeng, Barak Markus, Stoyan Georgiev +6 more

Effect of predicted protein-truncating genetic variants on the human transcriptome

Science(2015)10.1126/science.1261877

N/A

0.877DataRank · unranked

345 citations

Matti Pirinen, Donald F. Conrad, Monkol Lek, Emily K. Tsang, Konrad J. Karczewski +206 more

Systematic differences in discovery of genetic effects on gene expression and complex traits

Nature Genetics(2023)10.1038/s41588-023-01529-1

N/A

0.875DataRank · unranked

340 citations

Jeffrey P. Spence, Sahin Naqvi, Jonathan K. Pritchard, Hakhamanesh Mostafavi

A genetic history of continuity and mobility in the Iron Age central Mediterranean

Nature Ecology & Evolution(2023)10.1038/s41559-023-02143-4

N/A

0.860DataRank · unranked

41 citations

Margaret Antonio, Susanna Sawyer, Jeffrey P. Spence, Victoria Oberreiter, Clemens L. Weiß +20 more

Chromatin accessibility dynamics in a model of human forebrain development

Science(2020)10.1126/science.aay1645

N/A

0.843DataRank · unranked

274 citations

Nicholas A. Sinnott-Armstrong, Jimena Andersen, Se‐Jin Yoon, Nina Huber, Jonathan K. Pritchard +4 more

Confounding from Cryptic Relatedness in Case-Control Association Studies

PLoS Genetics(2005)10.1371/journal.pgen.0010032

N/A

0.820DataRank · unranked

236 citations

Jonathan K. Pritchard, Benjamin F. Voight

Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases

Scientific Reports(2015)10.1038/srep15145

N/A

0.811DataRank · unranked

222 citations

Tao Huang, Francesca Petralia, Quan Long, Bin Zhang, Carmen Argmann +128 more

Author Correction: Genetics of 35 blood and urine biomarkers in the UK Biobank

Nature Genetics(2021)10.1038/s41588-021-00956-2

N/A

0.693DataRank · unranked

14 citations

Yosuke Tanigawa, David Amar, Nina Mars, Christian Benner, Matthew Aguirre +19 more

Learning Causal Representations of Single Cells via Sparse Mechanism Shift Modeling

arXiv (Cornell University)(2022)10.48550/arxiv.2211.03553

N/A

0.684DataRank · unranked

14 citations

Nataša Tagasovska, Stephen Ra, Kyunghyn Cho, Jonathan K. Pritchard, Prisca Liberali +1 more

Genetic interactions drive heterogeneity in causal variant effect sizes for gene expression and complex traits

The American Journal of Human Genetics(2022)10.1016/j.ajhg.2022.05.014

N/A

0.663DataRank · unranked

82 citations

Shaila Musharoff, Jeffrey P. Spence, Harold Pimentel, Catherine Tcheandjieu, Hakhamanesh Mostafavi +19 more

Diversity of ribosomes at the level of rRNA variation associated with human health and disease

Cell Genomics(2024)10.1016/j.xgen.2024.100629

N/A

0.550DataRank · unranked

38 citations

Teodorus Theo Susanto, Xin Sui, Jeffrey P. Spence, Ramya Rangan, Naomi R. Genuth +5 more

The functional impact of rare variation across the regulatory cascade

Cell Genomics(2023)10.1016/j.xgen.2023.100401

N/A

0.526DataRank · unranked

15 citations

Nicole M. Ferraro, Benjamin J. Strober, François Aguet, Silva Kasela, Marios Arvanitis +33 more

Central control of dynamic gene circuits governs T cell rest and activation

Nature(2024)10.1038/s41586-024-08314-y

N/A

0.494DataRank · unranked

26 citations

Jennifer M. Umhoefer, Nadia Arang, Sivakanthan Kasinathan, Jacob W. Freimer, Zachary Steinhart +18 more

Genome-scale perturb-seq in primary human CD4+ T cells maps context-specific regulators of T cell programs and human immune traits

10.64898/2025.12.23.696273

N/A

0.449DataRank · unranked

19 citations

Emma Dann, Jun Yan, Justine Reyes Retana, Ryunosuke Goto, Reese C. Guitche +5 more

Gene regulatory network structure informs the distribution of perturbation effects

PLOS Computational Biology(2025)10.1371/journal.pcbi.1013387

N/A

0.345DataRank · unranked

9 citations

Jeffrey P. Spence, Guy Sella, Jonathan K. Pritchard, Matthew Aguirre

Gene regulatory network inference from CRISPR perturbations in primary CD4+ T cells elucidates the genomic basis of immune disease

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.17.557749

N/A

0.318DataRank · unranked

6 citations

Maya M. Arce, Jacob W. Freimer, Mineto Ota, Alexander Marson, Alexis Battle +2 more

Ancient trans-species polymorphism at the Major Histocompatibility Complex in primates

eLife(2025)10.7554/elife.103547

N/A

0.306DataRank · unranked

5 citations

Jonathan K. Pritchard, Alyssa Lyn Fortier

The primate Major Histocompatibility Complex as a case study of gene family evolution

eLife(2025)10.7554/elife.103545

N/A

0.208DataRank · unranked

3 citations

Jonathan K. Pritchard, Alyssa Lyn Fortier

Single-cell multiome and spatial profiling reveals pancreas cell type-specific gene regulatory programs driving type 1 diabetes progression

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.13.637721

N/A

0.104DataRank · unranked

1 citations

Sara Jimenez, Weston Elison, Luca Tucciarone, Abigail Howell, Gaowei Wang +20 more

Integrative analysis of metabolite GWAS illuminates the molecular basis of pleiotropy and genetic correlation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.02.486791

N/A

0DataRank · unranked

8 citations

Nicholas A. Sinnott-Armstrong, Anna Cichońska, Heli Julkunen, Eric B. Fauman, Peter Würtz +2 more

Precise modulation of transcription factor levels reveals drivers of dosage sensitivity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.13.495964

N/A

0DataRank · unranked

7 citations

Seungsoo Kim, Hanne Hoskens, Harold Matthews, Richard A. Spritz, Ophir D. Klein +6 more

Subfunctionalized expression drives evolutionary retention of ribosomal protein paralogs in vertebrates

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.03.490441

N/A

0DataRank · unranked

0 citations

Rut Molinuevo, Elisa Fazzari, Harrison Tom, Zijian Zhang, Julien Menendez +6 more

Systematic discovery and perturbation of regulatory genes in human T cells reveals the architecture of immune networks

Nature Genetics(2022)10.1038/s41588-022-01106-y

N/A

0DataRank · unranked

88 citations

Oren Shaked, Sahin Naqvi, Nicholas A. Sinnott-Armstrong, Arwa S. Kathiria, Christian M. Garrido +6 more

Precise modulation of transcription factor levels identifies features underlying dosage sensitivity

Nature Genetics(2023)10.1038/s41588-023-01366-2

N/A

0DataRank · unranked

140 citations

Seungsoo Kim, Hanne Hoskens, Harold Matthews, Richard A. Spritz, Ophir D. Klein +6 more

Base-editing mutagenesis maps alleles to tune human T cell functions

Nature(2023)10.1038/s41586-023-06835-6

N/A

0DataRank · unranked

94 citations

Carl C. Ward, Rama Dajani, Zev Armour-Garb, Mineto Ota, Vincent Allain +15 more

CRISPR screens decode cancer cell pathways that trigger γδ T cell detection

Nature(2023)10.1038/s41586-023-06482-x

N/A

0DataRank · unranked

93 citations

Shane Vedova, Jacob W. Freimer, Avinash Sahu, Amrita Ramesh, Maya M. Arce +13 more

Stable population structure in Europe since the Iron Age, despite high mobility

eLife(2023)10.7554/elife.79714

N/A

0DataRank · unranked

77 citations

Clemens L. Weiß, Ziyue Gao, Susanna Sawyer, Victoria Oberreiter, Hannah M. Moots +92 more

A genome-wide genetic screen uncovers novel determinants of human pigmentation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.29.462413

N/A

0DataRank · unranked

5 citations

Tomek Swigut, Jaaved Mohammed, Josh Tycko, Sahin Naqvi, Martin Arreola +6 more

Scaling the discrete-time Wright–Fisher model to biobank-scale datasets

Genetics(2023)10.1093/genetics/iyad168

N/A

0DataRank · unranked

25 citations

Tony Zeng, Hakhamanesh Mostafavi, Jonathan K. Pritchard, Jeffrey P. Spence

Subfunctionalized expression drives evolutionary retention of ribosomal protein paralogs Rps27 and Rps27l in vertebrates

eLife(2023)10.7554/elife.78695

N/A

0DataRank · unranked

17 citations

Rut Molinuevo, Elisa Fazzari, Harrison Tom, Zijian Zhang, Julien Menendez +6 more

Bayesian estimation of gene constraint from an evolutionary model with gene features

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.19.541520

N/A

0DataRank · unranked

18 citations

Jeffrey P. Spence, Hakhamanesh Mostafavi, Jonathan K. Pritchard, Tony Zeng

Diversity of ribosomes at the level of rRNA variation associated with human health and disease

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.30.526360

N/A

0DataRank · unranked

13 citations

Teodorus Theo Susanto, Xin Sui, Jeffrey P. Spence, Ramya Rangan, Naomi R. Genuth +5 more

A novel quantitative trait locus implicates Msh3 in the propensity for genome-wide short tandem repeat expansions in mice

Genome Research(2023)10.1101/gr.277576.122

N/A

0DataRank · unranked

7 citations

Cynthia Wu, David G. Ashbrook, Flavia Villani, Vincenza Colonna, Nima Mousavi +8 more

Bayesian estimation of gene constraint from an evolutionary model with gene features

Research Square(2023)10.21203/rs.3.rs-3012879/v1

N/A

0DataRank · unranked

7 citations

Jeffrey P. Spence, Hakhamanesh Mostafavi, Jonathan K. Pritchard, Tony Zeng

A natural mutator allele shapes mutation spectrum variation in mice

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.12.435196

N/A

0DataRank · unranked

16 citations

David G. Ashbrook, Annabel C. Beichman, Lu Lu, Abraham A. Palmer, Robert W. Williams +3 more

Scaling the Discrete-time Wright Fisher model to biobank-scale datasets

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.19.541517

N/A

0DataRank · unranked

0 citations

Tony Zeng, Hakhamanesh Mostafavi, Jonathan K. Pritchard, Jeffrey P. Spence

Systematic discovery and perturbation of regulatory genes in human T cells reveals the architecture of immune networks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.18.440363

N/A

0DataRank · unranked

29 citations

Oren Shaked, Sahin Naqvi, Nicholas A. Sinnott-Armstrong, Arwa S. Kathiria, Amy F. Chen +5 more

Convergent mutations in tissue-specific regulatory regions reveal novel cancer drivers

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.21.239954

N/A

0DataRank · unranked

0 citations

José A. Seoane, Richard Sallari, Jonathan K. Pritchard, Christina Curtis, Michael P. Snyder +1 more

Characterizing selection on complex traits through conditional frequency spectra

Genetics(2024)10.1093/genetics/iyae210

N/A

0DataRank · unranked

14 citations

Clemens L. Weiß, Huisheng Zhu, Hakhamanesh Mostafavi, Yuval B. Simons, Jeffrey P. Spence +2 more

Specificity, length, and luck: How genes are prioritized by rare and common variant association studies

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.12.628073

N/A

0DataRank · unranked

16 citations

Hakhamanesh Mostafavi, Mineto Ota, Nikhil Milind, Tamara Gjorgjieva, Courtney J. Smith +4 more

Transfer learning reveals sequence determinants of the quantitative response to transcription factor dosage

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.28.596078

N/A

0DataRank · unranked

8 citations

Seungsoo Kim, Saman Tabatabaee, Anusri Pampari, Anshul Kundaje, Jonathan K. Pritchard +2 more

Conditional frequency spectra as a tool for studying selection on complex traits in biobanks

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.15.599126

N/A

0DataRank · unranked

8 citations

Clemens L. Weiß, Huisheng Zhu, Hakhamanesh Mostafavi, Yuval B. Simons, Jeffrey P. Spence +2 more

A model for accurate quantification of CRISPR effects in pooled FACS screens

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.17.599448

N/A

0DataRank · unranked

4 citations

Jacob W. Freimer, Maya M. Arce, Christian M. Garrido, Alexander Marson, Jonathan K. Pritchard +1 more

Investigating the Role of Neighborhood Socioeconomic Status and Germline Genetics on Prostate Cancer Risk

medRxiv(2024)10.1101/2024.07.31.24311312

N/A

0DataRank · unranked

0 citations

Jeffrey P. Spence, Jonathan K. Pritchard, Linda Kachuri, John S. Witte, Jonathan Judd

Simple scaling laws control the genetic architectures of human complex traits

PLoS Biology(2025)10.1371/journal.pbio.3003402

N/A

0DataRank · unranked

12 citations

Hakhamanesh Mostafavi, Huisheng Zhu, Courtney J. Smith, Jonathan K. Pritchard, Guy Sella +1 more

Transfer learning reveals sequence determinants of the quantitative response to transcription factor dosage

Cell Genomics(2025)10.1016/j.xgen.2025.100780

N/A

0DataRank · unranked

11 citations

Seungsoo Kim, Saman Tabatabaee, Anusri Pampari, Anshul Kundaje, Jonathan K. Pritchard +2 more

Ancient trans-species polymorphism at the Major Histocompatibility Complex in primates

eLife(2025)10.7554/elife.103547.3

N/A

0DataRank · unranked

2 citations

Jonathan K. Pritchard, Alyssa Lyn Fortier

Investigating the role of neighborhood socioeconomic status and germline genetics on prostate cancer risk

Human Genetics and Genomics Advances(2025)10.1016/j.xhgg.2025.100492

N/A

0DataRank · unranked

1 citations

Jeffrey P. Spence, Jonathan K. Pritchard, Linda Kachuri, John S. Witte, Jonathan Judd

Shared heritability of face and brain shape distinct from cognitive traits

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.29.269258

N/A

0DataRank · unranked

1 citations

Yoeri Sleyp, Hanne Hoskens, Karlijne Indencleef, Jeffrey P. Spence, Rose Bruffaerts +14 more

The Primate Major Histocompatibility Complex: An Illustrative Example of Gene Family Evolution

eLife(2025)10.7554/elife.103545.1

N/A

0DataRank · unranked

5 citations

Jonathan K. Pritchard, Alyssa Lyn Fortier

Ribosome heterogeneity arising from common and rare rRNA sequence variants affects diverse human phenotypes

medRxiv(2025)10.1101/2025.09.02.25334953

N/A

0DataRank · unranked

1 citations

Anil Raj, Jordan Brown, Nathaniel Thayer, Manuel Hotz, David Hendrickson +3 more

The Primate Major Histocompatibility Complex: A Case Study of Gene Family Evolution

eLife(2025)10.7554/elife.103545.2

N/A

0DataRank · unranked

0 citations

Jonathan K. Pritchard, Alyssa Lyn Fortier

GWAS of three molecular traits highlights core genes and pathways alongside a highly polygenic background

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.20.051631

N/A

0DataRank · unranked

24 citations

Sahin Naqvi, Manuel A. Rivas, Jonathan K. Pritchard, Nicholas A. Sinnott-Armstrong

Evolutionary Persistence of DNA Methylation for Millions of Years after Ancient Loss of a De Novo Methyltransferase

Cell(2020)10.1016/j.cell.2019.12.012

N/A

0DataRank · unranked

153 citations

Phillip A. Dumesic, Harold Pimentel, Ammar Nasif, Caitlin I. Stoddard, Jordan E. Burke +12 more

Simple scaling laws control the genetic architectures of human complex traits

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.04.509926

N/A

0DataRank · unranked

45 citations

Hakhamanesh Mostafavi, Courtney J. Smith, Jonathan K. Pritchard, Guy Sella, Yuval B. Simons

Toward the Identifiability of Comparative Deep Generative Models

PubMed(2024)10.48550/arxiv.2401.15903

N/A

0DataRank · unranked

0 citations

Jan-Christian Huetter, Ehsan Hajiramezanali, Jonathan K. Pritchard, Prisca Liberali, Romain Lopez

A flexible modeling and inference framework for estimating variant effect sizes from GWAS summary statistics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.18.488696

N/A

0DataRank · unranked

42 citations

Nicholas A. Sinnott-Armstrong, Themistocles L. Assimes, Jonathan K. Pritchard, Jeffrey P. Spence

Jonathan K. Pritchard

Indexed papers

Top data-sharing exemplar

Papers