Mehdi Bouhaddou

Also affiliated with University of California, Los Angeles, Quantitative BioSciences, Institute of Molecular Genetics

MedicineBiochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 49 papers. Top paper: “A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing”.

A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.22.002386

N/A

14.3DataRank · unranked

456 citations

Gwendolyn M. Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Matthew J. O’Meara +95 more

The Global Phosphorylation Landscape of SARS-CoV-2 Infection

Cell(2020)10.1016/j.cell.2020.06.034

N/A

10.3DataRank · unranked

1152 citations

Danish Memon, Bjoern Meyer, Kris M. White, Veronica V. Rezelj, Miguel Correa Marrero +73 more

Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms

Science(2020)10.1126/science.abe9403

N/A

9.5DataRank · unranked

816 citations

Joseph Hiatt, Mehdi Bouhaddou, Veronica V. Rezelj, Svenja Ulferts, Hannes Braberg +95 more

Plitidepsin has potent preclinical efficacy against SARS-CoV-2 by targeting the host protein eEF1A

Science(2021)10.1126/science.abf4058

N/A

9.0DataRank · unranked

365 citations

Romel Rosales, Soner Yildiz, Thomas Kehrer, Lisa Miorin, Elena Moreno +21 more

Mutations in SARS-CoV-2 variants of concern link to increased spike cleavage and virus transmission

Cell Host & Microbe(2022)10.1016/j.chom.2022.01.006

N/A

5.8DataRank · unranked

197 citations

Ana S. Gonzalez‐Reiche, Sadaf Aslam, Ignacio Mena, Manon Laporte, Rebecca L. Pearl +24 more

Evolution of enhanced innate immune evasion by the SARS-CoV-2 B.1.1.7 UK variant

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.06.446826

N/A

5.0DataRank · unranked

107 citations

Mehdi Bouhaddou, Ann‐Kathrin Reuschl, Lorena Zuliani‐Alvarez, Benjamin J. Polacco, Adrian Pelin +28 more

The Landscape of Human Cancer Proteins Targeted by SARS-CoV-2

Cancer Discovery(2020)10.1158/2159-8290.cd-20-0559

N/A

2.4DataRank · unranked

63 citations

Merve Çakır, Jyoti Batra, Mehdi Bouhaddou, Manon Eckhardt, David E. Gordon +2 more

Host-directed therapies against early-lineage SARS-CoV-2 retain efficacy against B.1.1.7 variant

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.24.427991

N/A

2.4DataRank · unranked

42 citations

Lucy G. Thorne, Lorena Zuliani‐Alvarez, Mehdi Bouhaddou, Kirsten Obernier, Joseph Hiatt +18 more

SARS-CoV-2 variants evolve convergent strategies to remodel the host response

Cell(2023)10.1016/j.cell.2023.08.026

N/A

2.1DataRank · unranked

113 citations

Ann-Kathrin Reuschl, Benjamin J. Polacco, Lucy G. Thorne, Manisha R. Ummadi, Chengjin Ye +88 more

Fibrin drives thromboinflammation and neuropathology in COVID-19

Nature(2024)10.1038/s41586-024-07873-4

N/A

2.0DataRank · unranked

99 citations

Zhaoqi Yan, Mauricio Montaño, Elif G. Sözmen, Karuna Dixit, Rahul K. Suryawanshi +39 more

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing

Nature(2020)10.1038/s41586-020-2286-9

N/A

1.3DataRank · unranked

4829 citations

Gwendolyn M. Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Kris M. White +95 more

Proteomic and genetic analyses of influenza A viruses identify pan-viral host targets

Nature Communications(2023)10.1038/s41467-023-41442-z

N/A

1.2DataRank · unranked

62 citations

Michael McGregor, Mehdi Bouhaddou, Benjamin J. Polacco, Eun‐Young Kim, Thông Nguyen +50 more

A functional map of HIV-host interactions in primary human T cells

Nature Communications(2022)10.1038/s41467-022-29346-w

N/A

1.2DataRank · unranked

52 citations

Judd F. Hultquist, Michael McGregor, Mehdi Bouhaddou, Ryan T. Leenay, Lacy M. Simons +17 more

Preclinical and randomized phase I studies of plitidepsin in adults hospitalized with COVID-19

Life Science Alliance(2022)10.26508/lsa.202101200

N/A

1.2DataRank · unranked

52 citations

Pedro Landete, José A. López-Martín, Vicente Estrada, Roger Paredes, Pablo Guisado‐Vasco +46 more

Evolution of enhanced innate immune evasion by SARS-CoV-2

Nature(2021)10.1038/s41586-021-04352-y

N/A

0.900DataRank · unranked

402 citations

Mehdi Bouhaddou, Ann-Kathrin Reuschl, Lorena Zuliani-Alvarez, Benjamin J. Polacco, Adrian Pelin +41 more

CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes

Research Square(2021)10.21203/rs.3.rs-515215/v1

N/A

0.796DataRank · unranked

17 citations

Meghna Gupta, Caleigh M. Azumaya, Michelle Moritz, Sergei Pourmal, Amy Diallo +75 more

Caveolin-1 and Sox-2 are predictive biomarkers of cetuximab response in head and neck cancer

JCI Insight(2021)10.1172/jci.insight.151982

N/A

0.791DataRank · unranked

19 citations

Rex H. Lee, Hua Li, Neil E. Bhola, Rachel A. O’Keefe, Mohammad Naser +16 more

Oncogenic PKA signaling increases c-MYC protein expression through multiple targetable mechanisms

eLife(2023)10.7554/elife.69521

N/A

0.725DataRank · unranked

32 citations

Samantha Maisel, Yeonjoo Hwang, Bryan C Pascual, Rebecca RB Wolber, Phuong Vu +15 more

A scalable, open-source implementation of a large-scale mechanistic model for single cell proliferation and death signaling

Nature Communications(2022)10.1038/s41467-022-31138-1

N/A

0.658DataRank · unranked

27 citations

Arnab Mutsuddy, Ethan M. Bensman, William B. Dodd, Michael Saint-Antoine, Mehdi Bouhaddou +6 more

Impact of SARS-CoV-2 ORF6 and its variant polymorphisms on host responses and viral pathogenesis

Cell Host & Microbe(2023)10.1016/j.chom.2023.08.003

N/A

0.655DataRank · unranked

78 citations

Anastasija Čupić, Chengjin Ye, Soner Yildiz, Mehdi Bouhaddou, Nicholas A. Crossland +35 more

SARS-CoV-2 evolution balances conflicting roles of N protein phosphorylation

PLoS Pathogens(2024)10.1371/journal.ppat.1012741

N/A

0.655DataRank · unranked

24 citations

Alison Ciling, Irene P. Chen, Christopher R. Carlson, Armin N. Adly, Hannah S. Martin +11 more

Global landscape of the host response to SARS-CoV-2 variants reveals viral evolutionary trajectories

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.19.512927

N/A

0.524DataRank · unranked

14 citations

Ann‐Kathrin Reuschl, Benjamin J. Polacco, Lucy G. Thorne, Manisha R. Ummadi, Chengjin Ye +72 more

CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells

mBio(2024)10.1128/mbio.02222-23

N/A

0.351DataRank · unranked

8 citations

Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M. Haas, Mehdi Bouhaddou +16 more

Interaction of chikungunya virus glycoproteins with macrophage factors controls virion production

The EMBO Journal(2024)10.1038/s44318-024-00193-3

N/A

0.269DataRank · unranked

5 citations

Sangeetha Ramachandran, Serina Huang, Erin Kim, Yasaman Jami‐Alahmadi, Prashant Kaushal +4 more

Current proteomics methods applicable to dissecting the DNA damage response

NAR Cancer(2023)10.1093/narcan/zcad020

N/A

0.218DataRank · unranked

3 citations

Nevan J. Krogan, Mehdi Bouhaddou, Minkyu Kim, Monita Muralidharan

Protocol for mapping differential protein-protein interaction networks using affinity purification-mass spectrometry

STAR Protocols(2024)10.1016/j.xpro.2024.103286

N/A

0.190DataRank · unranked

2 citations

Manisha R. Ummadi, Gwendolyn M. Jang, Yennifer Delgado, Sara K. Makanani, Kareem Alba +13 more

Drug screen reveals new potent host-targeted antivirals against Mpox virus

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.02.651913

N/A

0.178DataRank · unranked

2 citations

Anne K. Zaiss, Nikhil Chakravarty, Sneha Singh, Yennifer Delgado, Ramya Paravastu +17 more

Hyperphosphorylation of BCL-2 family proteins underlies functional resistance to venetoclax in lymphoid malignancies

Journal of Clinical Investigation(2023)10.1172/jci170169

N/A

0DataRank · unranked

43 citations

Fen Zhu, Olga Dashevsky, Rin Mizuno, Jolin Xiao Hui Lai, Liam Hackett +19 more

Network inference from perturbation time course data

npj Systems Biology and Applications(2022)10.1038/s41540-022-00253-6

N/A

0DataRank · unranked

13 citations

Gregory R. Smith, Mehdi Bouhaddou, Alan D. Stern, James Erskine, Marc R. Birtwistle +1 more

Network modeling suggests HIV infection phenocopies PI3K-AKT pathway mutations to enhance HPV-associated cervical cancer

Molecular Omics(2023)10.1039/d3mo00025g

N/A

0DataRank · unranked

10 citations

Jacqueline M. Fabius, Lorena Zuliani‐Alvarez, Manon Eckhardt, George B. Kyei, Peter K. Quashie +4 more

Hepatitis C Virus Infects and Perturbs Liver Stem Cells

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.26.465357

N/A

0DataRank · unranked

1 citations

Tal Ashuach, Danielle E. Lyons, Camille R. Simoneau, Ann L. Erickson, Mehdi Bouhaddou +15 more

Data from The Landscape of Human Cancer Proteins Targeted by SARS-CoV-2

(2023)10.1158/2159-8290.c.6547727.v1

N/A

0DataRank · unranked

0 citations

Merve Çakır, Jyoti Batra, Mehdi Bouhaddou, Manon Eckhardt, David E. Gordon +2 more

CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.10.443524

N/A

0DataRank · unranked

84 citations

Caleigh M. Azumaya, Michelle Moritz, Sergei Pourmal, Amy Diallo, Gregory E. Merz +75 more

A Scalable, Open-Source Implementation of a Large-Scale Mechanistic Model for Single Cell Proliferation and Death Signaling

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.09.373407

N/A

0DataRank · unranked

0 citations

Arnab Mutsuddy, Ethan M. Bensman, William B. Dodd, Michael Saint-Antoine, Mehdi Bouhaddou +6 more

Functional genomic screens identify human host factors for SARS-CoV-2 and common cold coronaviruses

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.24.312298

N/A

0DataRank · unranked

33 citations

Camille R. Simoneau, Jessie Kulsuptrakul, Mehdi Bouhaddou, Katherine Travisano, Jennifer M. Hayashi +7 more

Genetic Screens Identify Host Factors for SARS-CoV-2 and Common Cold Coronaviruses

Cell(2020)10.1016/j.cell.2020.12.004

N/A

0DataRank · unranked

460 citations

Camille R. Simoneau, Jessie Kulsuptrakul, Mehdi Bouhaddou, Katherine Travisano, Jennifer M. Hayashi +15 more

The Chlamydia trachomatis secreted effector CebN targets nucleoporins and Rae1 to antagonize STAT1 nuclear import

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.25.587017

N/A

0DataRank · unranked

9 citations

Cherilyn A. Elwell, Xavier Tijerina, Madison A. Elliott, Yennifer Delgado, Jocelyn Ni +20 more

PhosNetVis: a web-based tool for fast kinase-substrate enrichment analysis and interactive 2D/3D network visualizations of phosphoproteomics data

arXiv (Cornell University)(2024)10.48550/arxiv.2402.05016

N/A

0DataRank · unranked

0 citations

Berk Turhan, Irene Font Peradejordi, Shreya Chandrasekar, Selim Kalaycı, Gnjatic, Sacha +4 more

Mapping Differential Protein-Protein Interaction Networks using Affinity Purification Mass Spectrometry

PubMed(2024)10.48550/arxiv.2405.09699

N/A

0DataRank · unranked

0 citations

Manisha R. Ummadi, Gwendolyn M. Jang, Yennifer Delgado, Sara K. Makanani, Sophie F. Blanc +12 more

PhosNetVis: A Web-Based Tool for Fast Kinase-Substrate Enrichment Analysis and Interactive 2D/3D Network Visualizations of Phosphoproteomics Data

SSRN Electronic Journal(2024)10.2139/ssrn.4890879

N/A

0DataRank · unranked

0 citations

Berk Turhan, Irene Font Peradejordi, Shreya Chandrasekar, Selim Kalaycı, Sacha Gnjatic +4 more

Old World alphaviruses use distinct mechanisms to infect brain microvascular endothelial cells for neuroinvasion

Cell Reports(2025)10.1016/j.celrep.2025.116305

N/A

0DataRank · unranked

6 citations

Ashley Tang, Doug Winters, Prashant Kaushal, Angélica Medina, Marta Nieto +10 more

Malaria exposure remodels the plasma proteome of Ghanaian children

BMC Infectious Diseases(2025)10.1186/s12879-025-10495-4

N/A

0DataRank · unranked

2 citations

Charles Ochieng’ Olwal, Andrea Fossati, Nancy Nyakoe, Jacqueline M. Fabius, Martin Gordon +7 more

PhosNetVis: A web-based tool for fast kinase-substrate enrichment analysis and interactive 2D/3D network visualizations of phosphoproteomics data

Patterns(2025)10.1016/j.patter.2024.101148

N/A

0DataRank · unranked

0 citations

Berk Turhan, Irene Font Peradejordi, Shreya Chandrasekar, Selim Kalaycı, Sacha Gnjatic +4 more

Drug screen reveals new potent host-targeted antivirals against Mpox virus

Research Square(2025)10.21203/rs.3.rs-6432510/v1

N/A

0DataRank · unranked

0 citations

Arjit Vijey Jeyachandran, Anne K. Zaiss, Nikhil Chakravarty, Sneha Singh, Yennifer Delgado +17 more

HIV Vpr activates a nucleolar-specific ATR pathway to degrade the nucleolar stress sensor CCDC137

Nucleic Acids Research(2025)10.1093/nar/gkaf531

N/A

0DataRank · unranked

0 citations

Rishi S Patel, Yennifer Delgado, Mehdi Bouhaddou, Lucie Etienne, Oliver I. Fregoso +1 more

Pharmacological reprogramming of plitidepsin as a SARS-CoV-2 inhibitor

Molecular Aspects of Medicine(2025)10.1016/j.mam.2025.101412

N/A

0DataRank · unranked

0 citations

José F. Varona, José A. López-Martín, Nuria Izquierdo‐Useros, E. Molina, Pablo Guisado‐Vasco +17 more

Defining blood-induced microglia functions in neurodegeneration through multiomic profiling

Nature Immunology(2023)10.1038/s41590-023-01522-0

N/A

0DataRank · unranked

127 citations

Zhaoqi Yan, Karuna Dixit, Jeffrey R. Johnson, Mehdi Bouhaddou, Anke Meyer‐Franke +16 more

LKB1 Spatially Regulates AMPK Activity Coordinate Cellular Oxidative Stress Response

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.17.688926

N/A

0DataRank · unranked

0 citations

Arnav Jhawar, Alexia Andrikopoulos, Declan M. Winters, Teagan S. Dean, Edmund D. Kapelczak +4 more

Leveraging modeling and simulation to optimize the therapeutic window for epigenetic modifier drugs

Pharmacology & Therapeutics(2022)10.1016/j.pharmthera.2022.108162

N/A

0DataRank · unranked

7 citations

Arthur J. Van De Vyver, Yu Li, Marc R. Birtwistle, Nevan J. Krogan, Mehdi Bouhaddou +1 more