G Yeo

Sanford Consortium for Regenerative Medicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

14.7Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Papers

Driven by 136 papers — median percentile 97. Top paper: “Expanded encyclopaedias of DNA elements in the human and mouse genomes”.

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

A large-scale binding and functional map of human RNA-binding proteins

Nature(2020)10.1038/s41586-020-2077-3

Top 3%

5.9DataRank

Top 3%1400 citations

Peter Freese, Henry Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao +34 more

A multi-scale map of cell structure fusing protein images and interactions

Nature(2021)10.1038/s41586-021-04115-9

Top 9%

2.3DataRank

Top 9%80 citations

Edward L. Huttlin, Casper Winsnes, Maya L. Gosztyla, Ludivine Wacheul, Marcus R. Kelly +23 more

How RNA-Binding Proteins Interact with RNA: Molecules and Mechanisms

Molecular Cell(2020)10.1016/j.molcel.2020.03.011

N/A

1.0DataRank · unranked

861 citations

Margaret C. Burns, G Yeo, Meredith Corley

A phage nucleus-associated RNA-binding protein is required for jumbo phage infection

Nucleic Acids Research(2024)10.1093/nar/gkae216

N/A

0.792DataRank · unranked

23 citations

Emily G. Armbruster, Jina Lee, Sitao Zhang, Brian A. Yee, Kseniya Malukhina +16 more

Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies

Nature Communications(2024)10.1038/s41467-024-45009-4

N/A

0.651DataRank · unranked

24 citations

Eric Kofman, Pratibha Jagannatha, Evan A. Boyle, Tao Yu, Krysten L. Jones +10 more

Localized molecular chaperone synthesis maintains neuronal dendrite proteostasis

Nature Communications(2024)10.1038/s41467-024-55055-7

N/A

0.522DataRank · unranked

19 citations

Javeria Rizwan, Phuong Le, Suleima Jacob‐Tomas, Mario Fernández Comaduran, Morgane Verbrugghe +9 more

Long-read Ribo-STAMP simultaneously measures transcription and translation with isoform resolution

Genome Research(2024)10.1101/gr.279176.124

N/A

0.479DataRank · unranked

11 citations

Alexandra Tankka, Daniel A. Lorenz, Tao Yu, Brian A. Yee, Kristopher W. Brannan +4 more

Conserved metabolite regulation of stress granule assembly via AdoMet

The Journal of Cell Biology(2020)10.1083/jcb.201904141

N/A

0DataRank · unranked

22 citations

Anthony Q. Vu, G Yeo, James E. Wilhelm, Kyle Begovich

Zika Virus Is Transmitted in Neural Progenitor Cells via Cell-to-Cell Spread, and Infection Is Inhibited by the Autophagy Inducer Trehalose

Journal of Virology(2020)10.1128/jvi.02024-20

N/A

0DataRank · unranked

12 citations

Zhe Zhu, Florian Krach, Jeremy N. Rich, G Yeo, Deborah H. Spector +1 more

Evaluation of Engineered CRISPR-Cas-Mediated Systems for Site-Specific RNA Editing

Cell Reports(2020)10.1016/j.celrep.2020.108350

N/A

0DataRank · unranked

43 citations

Kristopher W. Brannan, Kevin Dong, Brian A. Yee, G Yeo, Ryan J. Marina

Footprinting SHAPE-eCLIP Reveals Transcriptome-wide Hydrogen Bonds at RNA-Protein Interfaces

Molecular Cell(2020)10.1016/j.molcel.2020.11.014

N/A

0DataRank · unranked

37 citations

Ryan A. Flynn, Byron Lee, Steven M. Blue, Howard Y. Chang, G Yeo +1 more

Transcriptome-wide analysis of PGC-1α–binding RNAs identifies genes linked to glucagon metabolic action

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2000643117

N/A

0DataRank · unranked

34 citations

Stefan Aigner, Kfir Sharabi, Shashank Sathe, Beste Mutlu, G Yeo +2 more

DDX5 promotes oncogene C3 and FABP1 expressions and drives intestinal inflammation and tumorigenesis

Life Science Alliance(2020)10.26508/lsa.202000772

N/A

0DataRank · unranked

29 citations

Tianyun Long, Yuxin Li, Brian A. Yee, Benjamin S. Cho, Juan E Hernandez +10 more

The mRNA Decay Factor CAR-1/LSM14 Regulates Axon Regeneration via Mitochondrial Calcium Dynamics

Current Biology(2020)10.1016/j.cub.2019.12.061

N/A

0DataRank · unranked

28 citations

Kyung Won Kim, Suhong Xu, Stephen M. Blazie, Brian A. Yee, G Yeo +3 more

TheThermus thermophilusDEAD-box protein Hera is a general RNA binding protein and plays a key role in tRNA metabolism

RNA(2020)10.1261/rna.075580.120

N/A

0DataRank · unranked

5 citations

Brian A. Yee, Dione L. Sánchez‐Hevia, José Berenguer, Stefan Aigner, G Yeo +2 more

Context-dependent functional compensation between Ythdf m6A reader proteins

Genes & Development(2020)10.1101/gad.340695.120

N/A

0DataRank · unranked

259 citations

Vladislav Krupalnik, Sergey Viukov, Nofar Mor, Alejandro Aguilera-Castrejon, Dan Schneir +18 more

AMPK regulation of Raptor and TSC2 mediate metformin effects on transcriptional control of anabolism and inflammation

Genes & Development(2020)10.1101/gad.339895.120

N/A

0DataRank · unranked

101 citations

Kristina Hellberg, En‐Ching Luo, Eric L. Van Nostrand, Alina Dayn, Jingting Yu +5 more

A role for alternative splicing in circadian control of exocytosis and glucose homeostasis

Genes & Development(2020)10.1101/gad.338178.120

N/A

0DataRank · unranked

31 citations

Mark Perelis, Benjamin J. Weidemann, Akihiko Taguchi, Haopeng Lin, Chiaki Omura +13 more

Molecular determinants and heterogeneity of tissue-resident memory CD8 + T lymphocytes revealed by single-cell RNA sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.02.973578

N/A

0DataRank · unranked

7 citations

Zhaoren He, J. Justin Milner, Kyla Omilusik, Tiani L. Louis, Matthew Tsai +12 more

Functional delineation of tissue-resident CD8 + T cell heterogeneity during infection and cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.05.979146

N/A

0DataRank · unranked

2 citations

Clara Toma, Zhaoren He, Nadia S. Kurd, Quynh Nguyen, Bryan McDonald +9 more

ADAR2 deaminase activity promotes Th17 effector function and protects against intestine inflammation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.22.308221

N/A

0DataRank · unranked

2 citations

Yajing Hao, Benjamin S. Cho, Nicholas Chen, Anna Zheng, Shuyang Zhang +9 more

DDX5 targets tissue-specific RNAs to promote intestine tumorigenesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.25.006668

N/A

0DataRank · unranked

1 citations

Tianyun Long, Yuxin Li, Evelyn Ma, Brian A. Yee, Parth Patel +7 more

Unbiased identification of nanoparticle cell uptake mechanism via a genome-wide CRISPR/Cas9 knockout screen

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.08.332510

N/A

0DataRank · unranked

1 citations

Sarah A. Barnhill, A.A. Shishkin, David A. Nelles, Eric Byeon, Thai B. Nguyen +4 more

Inhibition of YTHDF2 triggers proteotoxic cell death in MYC-driven breast cancer

Molecular Cell(2021)10.1016/j.molcel.2021.06.014

N/A

0DataRank · unranked

183 citations

Mark Perelis, Isaac A. Chaim, Jitendra K. Meena, Julia K. Nussbacher, Alexandra Tankka +9 more

Reintroduction of the archaic variant of NOVA1 in cortical organoids alters neurodevelopment

Science(2021)10.1126/science.aax2537

N/A

0DataRank · unranked

143 citations

Edward S. Rice, Nathan K. Schaefer, Isaac A. Chaim, Emily C. Wheeler, Assael A. Madrigal +22 more

Loss of LUC7L2 and U1 snRNP subunits shifts energy metabolism from glycolysis to OXPHOS

Molecular Cell(2021)10.1016/j.molcel.2021.02.033

N/A

0DataRank · unranked

95 citations

Bridget E. Begg, Eran Mick, Hardik Shah, Sarah E. Calvo, Owen S. Skinner +6 more

Gain-of-function cardiomyopathic mutations in RBM20 rewire splicing regulation and re-distribute ribonucleoprotein granules within processing bodies

Nature Communications(2021)10.1038/s41467-021-26623-y

N/A

0DataRank · unranked

69 citations

Yuichiro Miyaoka, Alessandro Bertero, Steven M. Blue, Matthew Spindler, Kenneth K. B. Tan +17 more

Integrative RNA-omics Discovers GNAS Alternative Splicing as a Phenotypic Driver of Splicing Factor–Mutant Neoplasms

Cancer Discovery(2021)10.1158/2159-8290.cd-21-0508

N/A

0DataRank · unranked

56 citations

Shailee Vora, Daniel Mayer, Andriana G. Kotini, Malgorzata Olszewska, Samuel S. Park +7 more

Emergence of an early SARS-CoV-2 epidemic in the United States

Cell(2021)10.1016/j.cell.2021.07.030

N/A

0DataRank · unranked

52 citations

Karthik Gangavarapu, Catelyn Anderson, Allison R. Smither, John A. Vanchiere, Rebecca Rose +47 more

Non-microRNA binding competitively inhibits LIN28 regulation

Cell Reports(2021)10.1016/j.celrep.2021.109517

N/A

0DataRank · unranked

16 citations

Shashank Sathe, Emily C. Wheeler, G Yeo, Frederick E. Tan

Persistent mRNA localization defects and cell death in ALS neurons caused by transient cellular stress

Cell Reports(2021)10.1016/j.celrep.2021.109685

N/A

0DataRank · unranked

39 citations

Shashank Sathe, Kari L. Server, Thai B. Nguyen, Amit Fulzele, Neal Cody +7 more

A CRISPR RNA-binding protein screen reveals regulators of RUNX1 isoform generation

Blood Advances(2021)10.1182/bloodadvances.2020002090

N/A

0DataRank · unranked

12 citations

Jaclyn M. Einstein, Dinghai Zheng, Nathan D. Jayne, Xiang‐Dong Fu, Bin Tian +3 more

fSHAPE, fSHAPE-eCLIP, and SHAPE-eCLIP probe transcript regions that interact with specific proteins

STAR Protocols(2021)10.1016/j.xpro.2021.100762

N/A

0DataRank · unranked

1 citations

Ryan A. Flynn, Steven M. Blue, Brian A. Yee, Howard Y. Chang, G Yeo +1 more

Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States

medRxiv(2021)10.1101/2021.02.06.21251159

N/A

0DataRank · unranked

106 citations

Karthik Gangavarapu, Mark Zeller, Alexandre Bolze, Elizabeth T. Cirulli, Kelly M. Schiabor Barrett +48 more

Emergence of an early SARS-CoV-2 epidemic in the United States

medRxiv(2021)10.1101/2021.02.05.21251235

N/A

0DataRank · unranked

10 citations

Karthik Gangavarapu, Catelyn Anderson, Allison R. Smither, John A. Vanchiere, Rebecca Rose +47 more

Splicing Factor SRSF1 Deficiency in the Liver Triggers NASH-like Pathology via R-Loop Induced DNA Damage and Cell Death

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.10.451875

N/A

0DataRank · unranked

0 citations

Bhoomika Mathur, Michael F. Saikali, Ullas V. Chembazhi, Steven M. Blue, Brian A. Yee +9 more

RBM17 Mediates Evasion of Pro-Leukemic Factors from Splicing-coupled NMD to Enforce Leukemic Stem Cell Maintenance

Research Square(2021)10.21203/rs.3.rs-728533/v1

N/A

0DataRank · unranked

0 citations

Ana Vujovic, Nandan Deshpande, Shashank Sathe, Govardhan Anande, Joshua Xu +6 more

Pseudouridine synthases modify human pre-mRNA co-transcriptionally and affect pre-mRNA processing

Molecular Cell(2022)10.1016/j.molcel.2021.12.023

N/A

0DataRank · unranked

202 citations

Amanda Su, Margaret C. Burns, Julia K. Nussbacher, Cassandra Schaening-Burgos, Shashank Sathe +3 more

Illuminating RNA biology through imaging

Nature Cell Biology(2022)10.1038/s41556-022-00933-9

N/A

0DataRank · unranked

118 citations

Noorsher Ahmed, G Yeo, Phuong Le

An RNA-targeting CRISPR–Cas13d system alleviates disease-related phenotypes in Huntington’s disease models

Nature Neuroscience(2022)10.1038/s41593-022-01207-1

N/A

0DataRank · unranked

103 citations

Qian Wu, Maya L. Gosztyla, Hongshuai Liu, Minmin Yao, Chuangchuang Zhang +11 more

Transcriptome-wide identification of RNA-binding protein binding sites using seCLIP-seq

Nature Protocols(2022)10.1038/s41596-022-00680-z

N/A

0DataRank · unranked

90 citations

Brian A. Yee, Gabriel A. Pratt, Jasmine R. Mueller, Samuel S. Park, Alexander A. Shishkin +4 more

Small intestine and colon tissue-resident memory CD8+ T cells exhibit molecular heterogeneity and differential dependence on Eomes

Immunity(2022)10.1016/j.immuni.2022.12.007

N/A

0DataRank · unranked

76 citations

Han G. Duong, Abigail E. Limary, Eleanor S. Kim, Paul Wei‐Che Hsu, Shefali A. Patel +16 more

The long noncoding RNA Malat1 regulates CD8+ T cell differentiation by mediating epigenetic repression

The Journal of Experimental Medicine(2022)10.1084/jem.20211756

N/A

0DataRank · unranked

46 citations

Shengyun Ma, Eleanor S. Kim, Nadia Kurd, Matthew Tsai, Tiffani Tysl +10 more

AKT constitutes a signal-promoted alternative exon-junction complex that regulates nonsense-mediated mRNA decay

Molecular Cell(2022)10.1016/j.molcel.2022.05.013

N/A

0DataRank · unranked

35 citations

Elizabeth Abshire, Maximilian W. Popp, Christoph Pröschel, Joshua L. Schwartz, G Yeo +2 more

The splicing factor RBM17 drives leukemic stem cell maintenance by evading nonsense-mediated decay of pro-leukemic factors

Nature Communications(2022)10.1038/s41467-022-31155-0

N/A

0DataRank · unranked

35 citations

Ana Vujovic, Nandan Deshpande, Shashank Sathe, Govardhan Anande, He Tian Chen +7 more

Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP

Nature Methods(2022)10.1038/s41592-022-01708-8

N/A

0DataRank · unranked

24 citations

Hsuan-Lin Her, Kylie A. Shen, Katie Rothamel, Kasey R. Hutt, Allan C. Nojadera +6 more

Nuclear and cytoplasmic poly(A) binding proteins (PABPs) favor distinct transcripts and isoforms

Nucleic Acids Research(2022)10.1093/nar/gkac263

N/A

0DataRank · unranked

28 citations

Eric Kofman, G Yeo, Amy E. Pasquinelli, Angela L Nicholson-Shaw

MECP2-related pathways are dysregulated in a cortical organoid model of myotonic dystrophy

Science Translational Medicine(2022)10.1126/scitranslmed.abn2375

N/A

0DataRank · unranked

27 citations

Wenhao Jin, Shashank Shathe, Assael A. Madrigal, Krysten L. Jones, Joshua L. Schwartz +7 more

The ViReflow pipeline enables user friendly large scale viral consensus genome reconstruction

Scientific Reports(2022)10.1038/s41598-022-09035-w

N/A

0DataRank · unranked

23 citations

Kathleen M. Fisch, Amanda Birmingham, Peter DeHoff, G Yeo, Kristen Jepsen +3 more

Aberrant NOVA1 function disrupts alternative splicing in early stages of amyotrophic lateral sclerosis

Acta Neuropathologica(2022)10.1007/s00401-022-02450-3

N/A

0DataRank · unranked

23 citations

Emily C. Wheeler, Martin Regensburger, Tom Boerstler, Holger Wend, Anthony Q. Vu +10 more

Engineered U1 snRNAs to modulate alternatively spliced exons

Methods(2022)10.1016/j.ymeth.2022.06.008

N/A

0DataRank · unranked

17 citations

Aaron A. Smargon, G Yeo, Samuel T. Hatch

Aging RNA granule dynamics in neurodegeneration

Frontiers in Molecular Biosciences(2022)10.3389/fmolb.2022.991641

N/A

0DataRank · unranked

16 citations

Norah Al-Azzam, Tao Yu, G Yeo, Kevin Rhine

Prions induce an early Arc response and a subsequent reduction in mGluR5 in the hippocampus

Neurobiology of Disease(2022)10.1016/j.nbd.2022.105834

N/A

0DataRank · unranked

15 citations

Jessica Lawrence, Katrin Soldau, Donald Pizzo, Emily C. Wheeler, Patricia Aguilar‐Calvo +13 more

Metadensity: a background-aware python pipeline for summarizing CLIP signals on various transcriptomic sites

Bioinformatics Advances(2022)10.1093/bioadv/vbac083

N/A

0DataRank · unranked

13 citations

Evan A. Boyle, G Yeo, Hsuan-Lin Her

SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with Rothia sp.

mSystems(2022)10.1128/msystems.01411-21

N/A

0DataRank · unranked

11 citations

Rodolfo A. Salido, Shi Huang, Gibraan Rahman, Rebecca Tsai, Holly Valentine +35 more

Crosstalk between CRISPR-Cas9 and the human transcriptome

Nature Communications(2022)10.1038/s41467-022-28719-5

N/A

0DataRank · unranked

10 citations

Assael A. Madrigal, Brian A. Yee, Kevin Dong, Jasmine R. Mueller, G Yeo +1 more

Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings

mSystems(2022)10.1128/msystems.00103-22

N/A

0DataRank · unranked

8 citations

Pedro Belda‐Ferre, Rodolfo A. Salido, Rebecca Tsai, Brett Austin, William Jordan +32 more

Scalable and deep profiling of mRNA targets for individual microRNAs with chimeric eCLIP

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.13.480296

N/A

0DataRank · unranked

43 citations

Alexander A. Shishkin, Brian A. Yee, Kylie A. Shen, Diana Cox, Samuel S. Park +5 more

Bento: A toolkit for subcellular analysis of spatial transcriptomics data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.10.495510

N/A

0DataRank · unranked

27 citations

Noorsher Ahmed, Nicole Lopez, Dylan C. Lam, Alexander Monell, Colin Kern +8 more

Proteomic discovery of chemical probes that perturb protein complexes in human cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.12.520090

N/A

0DataRank · unranked

11 citations

Jarrett R. Remsberg, Martin G. Jaeger, Katherine Rothamel, Hsuan-Lin Her, Kristen E. DeMeester +30 more

Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.21.481223

N/A

0DataRank · unranked

4 citations

Jasmine R. Mueller, En‐Ching Luo, Brian A. Yee, Danielle Schafer, Jonathan C. Schmok +22 more

Skipper analysis of RNA-protein interactions highlights depletion of genetic variation in translation factor binding sites

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.08.511447

N/A

0DataRank · unranked

3 citations

Hsuan-Lin Her, Jasmine R. Mueller, Grady G. Nguyen, G Yeo, Evan A. Boyle

Ulcerative Colitis Host-Microbiome Response to Hyperbaric Oxygen Therapy

medRxiv(2022)10.1101/2022.01.14.22269325

N/A

0DataRank · unranked

2 citations

Robert H. Mills, Melissa C. Kordahi, Marvic Carrillo-Terrazas, Henrry Secaira-Morocho, Christella E. Widjaja +31 more

Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions

Research Square(2022)10.21203/rs.3.rs-1394331/v1

N/A

0DataRank · unranked

2 citations

Joy S. Xiang, Jasmine R. Mueller, En‐Ching Luo, Brian A. Yee, Danielle Schafer +24 more

LARP4 Is an RNA-Binding Protein That Binds Nuclear-Encoded Mitochondrial mRNAs To Promote Mitochondrial Function

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.24.513614

N/A

0DataRank · unranked

2 citations

Chae Yun Cho, Hsuan-Lin Her, Tony Hunter, G Yeo, Benjamin M. Lewis

Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.01.478759

N/A

0DataRank · unranked

1 citations

Karenina Sanders, Pedro Belda‐Ferre, Rodolfo A. Salido, Rebecca Tsai, Brett Austin +30 more

Transcriptome Regulation by PARP13 in Basal and Antiviral States in Human Cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.19.520435

N/A

0DataRank · unranked

1 citations

Yoshinari Ando, Stefan Aigner, Brian A. Yee, G Yeo, Anthony K. L. Leung +1 more

Proteomic discovery of chemical probes that perturb protein complexes in human cells

Molecular Cell(2023)10.1016/j.molcel.2023.03.026

N/A

0DataRank · unranked

94 citations

Jarrett R. Remsberg, Martin G. Jaeger, Katherine Rothamel, Hsuan-Lin Her, Kristen E. DeMeester +30 more

Remodeling oncogenic transcriptomes by small molecules targeting NONO

Nature Chemical Biology(2023)10.1038/s41589-023-01270-0

N/A

0DataRank · unranked

87 citations

Seong Joo Koo, Garrett L. Lindsey, Hsuan-Lin Her, Steven M. Blue, Haoxin Li +7 more

HydRA: Deep-learning models for predicting RNA-binding capacity from protein interaction association context and protein sequence

Molecular Cell(2023)10.1016/j.molcel.2023.06.019

N/A

0DataRank · unranked

51 citations

Kristopher W. Brannan, Katannya Kapeli, Samuel S. Park, Hui Tan, Maya L. Gosztyla +8 more

Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death

Nature Communications(2023)10.1038/s41467-023-35932-3

N/A

0DataRank · unranked

45 citations

Bhoomika Mathur, Michael F. Saikali, Ullas V. Chembazhi, Katelyn Toohill, You Jin Song +13 more

Skipper analysis of eCLIP datasets enables sensitive detection of constrained translation factor binding sites

Cell Genomics(2023)10.1016/j.xgen.2023.100317

N/A

0DataRank · unranked

43 citations

Hsuan-Lin Her, Jasmine R. Mueller, Jack T. Naritomi, Grady G. Nguyen, G Yeo +1 more

A super-enhancer-regulated RNA-binding protein cascade drives pancreatic cancer

Nature Communications(2023)10.1038/s41467-023-40798-6

N/A

0DataRank · unranked

37 citations

Tae Gyu Oh, Stefan Aigner, En‐Ching Luo, Brian A. Yee, Tania Campos +33 more

Early transcriptional and epigenetic divergence of CD8+ T cells responding to acute versus chronic infection

PLoS Biology(2023)10.1371/journal.pbio.3001983

N/A

0DataRank · unranked

26 citations

Wenhao Jin, Yi Chia Liu, Eleanor S. Kim, Zhaoren He, Cynthia S. Indralingam +10 more

Xiphoid nucleus of the midline thalamus controls cold-induced food seeking

Nature(2023)10.1038/s41586-023-06430-9

N/A

0DataRank · unranked

26 citations

Phuong Le, Samarth Aggarwal, Alan Zhang, Kristina Wang, Tianbo Qi +7 more

RANK ligand converts the NCoR/HDAC3 co-repressor to a PGC1β- and RNA-dependent co-activator of osteoclast gene expression

Molecular Cell(2023)10.1016/j.molcel.2023.08.029

N/A

0DataRank · unranked

23 citations

Eric Kofman, Maria Almeida, Zhengyu Ouyang, Filipa Ponte, Jasmine R. Mueller +23 more

Safer at school early alert: an observational study of wastewater and surface monitoring to detect COVID-19 in elementary schools

The Lancet Regional Health - Americas(2023)10.1016/j.lana.2023.100449

N/A

0DataRank · unranked

40 citations

Smruthi Karthikeyan, Tommi Gaines, Richard S. Garfein, Rodolfo A. Salido, Victor Cantu +66 more

RNA binding protein DDX5 restricts RORγt + T reg suppressor function to promote intestine inflammation

Science Advances(2023)10.1126/sciadv.add6165

N/A

0DataRank · unranked

19 citations

Qiyuan Yang, Nicholas Chen, Anna Zheng, Nazia Abbasi, Gaowei Wang +10 more

Seryl-tRNA synthetase promotes translational readthrough by mRNA binding and involvement of the selenocysteine incorporation machinery

Nucleic Acids Research(2023)10.1093/nar/gkad773

N/A

0DataRank · unranked

17 citations

Justin Wang, Yi Shi, Brian A. Yee, Markus Terrey, Qian Zhang +8 more

LARP4 is an RNA-binding protein that binds nuclear-encoded mitochondrial mRNAs to promote mitochondrial function

RNA(2023)10.1261/rna.079799.123

N/A

0DataRank · unranked

17 citations

Chae Yun Cho, Hsuan-Lin Her, Orel Mizrahi, Tony Hunter, G Yeo +1 more

In Vivo Screening Unveils Pervasive RNA-Binding Protein Dependencies in Leukemic Stem Cells and Identifies ELAVL1 as a Therapeutic Target

Blood Cancer Discovery(2023)10.1158/2643-3230.bcd-22-0086

N/A

0DataRank · unranked

16 citations

Laura de Rooij, Ava Keyvani Chahi, He Tian Chen, Brian A. Yee, Sampath K. Loganathan +18 more

FLARE: a fast and flexible workflow for identifying RNA editing foci

BMC Bioinformatics(2023)10.1186/s12859-023-05452-4

N/A

0DataRank · unranked

12 citations

Brian A. Yee, Hugo C. Medina-Muñoz, G Yeo, Eric Kofman

Computational cell–cell interaction technologies drive mechanistic and biomarker discovery in the tumor microenvironment

Current Opinion in Biotechnology(2023)10.1016/j.copbio.2023.103048

N/A

0DataRank · unranked

12 citations

Clarence K. Mah, G Yeo, Nathan E. Lewis, Avery Pong

Programmable macromolecule-based RNA-targeting therapies to treat human neurological disorders

RNA(2023)10.1261/rna.079519.122

N/A

0DataRank · unranked

4 citations

Aaron A. Smargon, G Yeo, Kathryn H. Morelli

Stratification of enterochromaffin cells by single-cell expression analysis

eLife(2023)10.7554/elife.90596

N/A

0DataRank · unranked

12 citations

Linda J. Fothergill, Kari Lee, Brandon Y. Liu, Ada Koo, Mark Perelis +7 more

Large-scale map of RNA binding protein interactomes across the mRNA life-cycle

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.08.544225

N/A

0DataRank · unranked

8 citations

Katherine Rothamel, Kristopher W. Brannan, Wenhao Jin, Benjamin J. Bokor, Kevin Dong +13 more

A phage nucleus-associated RNA-binding protein is required for jumbo phage infection

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.22.559000

N/A

0DataRank · unranked

7 citations

Emily G. Armbruster, Jina Lee, Sitao Zhang, Brian A. Yee, Yajie Gu +14 more

Localized molecular chaperone synthesis maintains neuronal dendrite proteostasis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.03.560761

N/A

0DataRank · unranked

7 citations

Javeria Rizwan, Phuong Le, Suleima Jacob‐Tomas, Mario Fernandez-Comaduran, Morgane Verbrugghe +8 more

Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.25.558915

N/A

0DataRank · unranked

4 citations

Eric Kofman, Pratibha Jagannatha, Evan A. Boyle, Tao Yu, Krysten L. Jones +10 more

Zfp697 is an RNA-binding protein that regulates skeletal muscle inflammation and regeneration

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.12.544338

N/A

0DataRank · unranked

3 citations

Paulo R. Jannig, Maya L. Gosztyla, Igor Červenka, Serge Ducommun, Stine M. Præstholm +14 more

circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.14.557527

N/A

0DataRank · unranked

3 citations

Andreas Bjerregaard Kamstrup, Morten Muhlig Nielsen, Anne Kruse Hollensen, Mette Laugesen Graversgaard, Matilde Helbo Sørensen +9 more

Xiphoid nucleus of the midline thalamus controls cold-induced food seeking

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.16.533067

N/A

0DataRank · unranked

2 citations

Phuong Le, Samarth Aggarwal, Alan L. Zhang, Kristina Wang, Tianbo Qi +7 more

Data from In Vivo Screening Unveils Pervasive RNA-Binding Protein Dependencies in Leukemic Stem Cells and Identifies ELAVL1 as a Therapeutic Target

(2023)10.1158/2643-3230.c.6572000

N/A

0DataRank · unranked

0 citations

Laura de Rooij, Ava Keyvani Chahi, He Tian Chen, Brian A. Yee, Sampath K. Loganathan +18 more

Data from In Vivo Screening Unveils Pervasive RNA-Binding Protein Dependencies in Leukemic Stem Cells and Identifies ELAVL1 as a Therapeutic Target

(2023)10.1158/2643-3230.c.6572000.v2

N/A

0DataRank · unranked

0 citations

Laura de Rooij, Ava Keyvani Chahi, He Tian Chen, Brian A. Yee, Sampath K. Loganathan +18 more

Localized molecular chaperone synthesis maintains neuronal dendrite proteostasis

Research Square(2023)10.21203/rs.3.rs-3673702/v1

N/A

0DataRank · unranked

0 citations

Célia Alecki, Javeria Rizwan, Phuong Le, Suleima Jacob‐Tomas, Jia Xu +5 more

eLife Assessment: Base editing strategies to convert CAG to CAA diminish the disease-causing mutation in Huntington's disease

(2023)10.7554/elife.89782.1.sa3

N/A

0DataRank · unranked

0 citations

G Yeo

Bento: a toolkit for subcellular analysis of spatial transcriptomics data

Genome biology(2024)10.1186/s13059-024-03217-7

N/A

0DataRank · unranked

48 citations

Noorsher Ahmed, Nicole A. Lopez, Dylan C. Lam, Avery Pong, Alexander Monell +9 more

Decoding protein–RNA interactions using CLIP-based methodologies

Nature Reviews Genetics(2024)10.1038/s41576-024-00749-3

N/A

0DataRank · unranked

44 citations

Danielle Schafer, Katherine Rothamel, G Yeo, Joy S. Xiang

Integrated multi-omics analysis of zinc-finger proteins uncovers roles in RNA regulation

Molecular Cell(2024)10.1016/j.molcel.2024.08.010

N/A

0DataRank · unranked

43 citations

Lijun Zhan, Sara Olson, Xintao Wei, Jack T. Naritomi, Grady G. Nguyen +18 more

Steering research on mRNA splicing in cancer towards clinical translation

Nature reviews. Cancer(2024)10.1038/s41568-024-00750-2

N/A

0DataRank · unranked

40 citations

Frédéric H.‐T. Allain, Brittany Angarola, Douglas L. Black, Angela N. Brooks, Chonghui Cheng +14 more

Large-scale evaluation of the ability of RNA-binding proteins to activate exon inclusion

Nature Biotechnology(2024)10.1038/s41587-023-02014-0

N/A

0DataRank · unranked

35 citations

Manya Jain, Lena Annika Street, Alex T. Tankka, Danielle Schafer, Hsuan-Lin Her +9 more

Autism-associated CHD8 controls reactive gliosis and neuroinflammation via remodeling chromatin in astrocytes

Cell Reports(2024)10.1016/j.celrep.2024.114637

N/A

0DataRank · unranked

22 citations

Mei Yuan, Rachel Yan, Lin Yuan, Jonathan J. Wilde, Hailey Eckersberg +23 more

Epistatic interactions between NMD and TRP53 control progenitor cell maintenance and brain size

Neuron(2024)10.1016/j.neuron.2024.04.006

N/A

0DataRank · unranked

15 citations

Jingrong Zhao, Naoto Kubota, Zhelin Li, Y. Amy Lam, Lauren P. Nguyen +10 more

Supra- and sub-threshold intracellular-like recording of 2D and 3D neuronal networks using nanopillar electrode arrays

Microsystems & Nanoengineering(2024)10.1038/s41378-024-00817-y

N/A

0DataRank · unranked

11 citations

Joshua L. Schwartz, C. A. Walsh, Wen Mai Wong, Vrund Patel, Yu‐Wen Hsieh +10 more

Zfp697 is an RNA-binding protein that regulates skeletal muscle inflammation and remodeling

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2319724121

N/A

0DataRank · unranked

8 citations

Paulo R. Jannig, Maya L. Gosztyla, Igor Červenka, Serge Ducommun, Stine M. Præstholm +16 more

High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues

Nature Communications(2024)10.1038/s41467-024-50363-4

N/A

0DataRank · unranked

8 citations

Tao Yu, Eric Kofman, Pratibha Jagannatha, Kevin Rhine, Brian A. Yee +3 more

Strategies for programmable manipulation of alternative splicing

Current Opinion in Genetics & Development(2024)10.1016/j.gde.2024.102272

N/A

0DataRank · unranked

8 citations

G Yeo, Jonathan C. Schmok

Transcriptome regulation by PARP13 in basal and antiviral states in human cells

iScience(2024)10.1016/j.isci.2024.109251

N/A

0DataRank · unranked

10 citations

Yoshinari Ando, Stefan Aigner, Brian A. Yee, G Yeo, Anthony K. L. Leung +1 more

Integrated Genomic and Social Network Analyses of SARS-CoV-2 Transmission in the Healthcare Setting

Clinical Infectious Diseases(2024)10.1093/cid/ciad738

N/A

0DataRank · unranked

7 citations

Shira R. Abeles, Chris Longhurst, Lucy E. Horton, Frank Edward Myers, Lindsay Riggs-Rodriguez +58 more

Inhibition of RNA splicing triggers CHMP7 nuclear entry, impacting TDP-43 function and leading to the onset of ALS cellular phenotypes

Neuron(2024)10.1016/j.neuron.2024.10.007

N/A

0DataRank · unranked

7 citations

Jenny H To, Vaishali Gautam, Lena Annika Street, Chloe Nguyen, Jack T. Naritomi +19 more

Rational design yields RNA-binding zinc finger domains with altered sequence specificity

RNA(2024)10.1261/rna.080329.124

N/A

0DataRank · unranked

2 citations

Joy S. Xiang, G Yeo, Kevin D. Corbett, Qishan Liang

Mudskipper detects combinatorial RNA binding protein interactions in multiplexed CLIP data

Cell Genomics(2024)10.1016/j.xgen.2024.100603

N/A

0DataRank · unranked

1 citations

Katherine Rothamel, Grady G. Nguyen, Evan A. Boyle, G Yeo, Hsuan-Lin Her

Protocol to process crosslinking and immunoprecipitation data into annotated binding sites

STAR Protocols(2024)10.1016/j.xpro.2024.103040

N/A

0DataRank · unranked

1 citations

Grady G. Nguyen, Jack T. Naritomi, Hema Kopalle, Brian A. Yee, Katherine Rothamel +3 more

Author Response: circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA

(2024)10.7554/elife.91783.2.sa4

N/A

0DataRank · unranked

0 citations

Andreas Bjerregaard Kamstrup, Morten Muhlig Nielsen, Anne Kruse Hollensen, Mette Laugesen Graversgaard, Matilde Helbo Sørensen +9 more

Reviewer #3 (Public Review): circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA

(2024)10.7554/elife.91783.3.sa0

N/A

0DataRank · unranked

0 citations

Andreas Bjerregaard Kamstrup, Morten Muhlig Nielsen, Anne Kruse Hollensen, Mette Laugesen Graversgaard, Matilde Helbo Sørensen +9 more

Identification of RBP binding sites using RNA deaminases

Methods in enzymology on CD-ROM/Methods in enzymology(2024)10.1016/bs.mie.2024.11.043

N/A

0DataRank · unranked

0 citations

Qishan Liang, Shuhao Xu, G Yeo, Yu Tao

Tissue-resident memory CD8 T cell diversity is spatiotemporally imprinted

Nature(2025)10.1038/s41586-024-08466-x

N/A

0DataRank · unranked

78 citations

Alexander Monell, Amir Ferry, Vida Luna, Kitty P. Cheung, Giovanni Galletti +15 more

Investigational eIF2B activator DNL343 modulates the integrated stress response in preclinical models of TDP-43 pathology and individuals with ALS in a randomized clinical trial

Nature Communications(2025)10.1038/s41467-025-63031-y

N/A

0DataRank · unranked

11 citations

Seungyoon B. Yu, Isaac Cohen, Melania H. Fanok, Wei Luan, Romeo Maciuca +38 more

The IFIT2–IFIT3 antiviral complex targets short 5’ untranslated regions on viral mRNAs for translation inhibition

Nature Microbiology(2025)10.1038/s41564-025-02138-w

N/A

0DataRank · unranked

8 citations

Candace Todd, B. Cook, Agustina D’Urso, Shivani Khosla, Elena Estrada +19 more

Foxo1 regulates intestinal tissue–resident memory CD8 T cell biology in an anatomic compartment– and context-specific manner

Science Immunology(2025)10.1126/sciimmunol.adn1894

N/A

0DataRank · unranked

6 citations

Eunice J. Choi, William H. Wong, Yun Hsuan Lin, Sara A. Vandenburgh, Yi Chia Liu +8 more

Integrated multi-omic characterizations of the synapse reveal RNA processing factors and ubiquitin ligases associated with neurodevelopmental disorders

Cell Systems(2025)10.1016/j.cels.2025.101204

N/A

0DataRank · unranked

5 citations

Maya L. Gosztyla, Xinzhu Tan, Lara E. Dozier, Brent Wilkinson, Justin McKetney +31 more

Enhancing RNA base editing on mammalian transcripts with small nuclear RNAs

Nature Chemical Biology(2025)10.1038/s41589-025-02026-8

N/A

0DataRank · unranked

2 citations

Deepak Pant, Trent A. Gomberg, Christian Fagre, Sofia Glynne, Johnathan Nguyen +4 more

Stratification of enterochromaffin cells by single-cell expression analysis

eLife(2025)10.7554/elife.90596.3

N/A

0DataRank · unranked

2 citations

Linda J. Fothergill, Kari Lee, Brandon Y. Liu, Ada Koo, Mark Perelis +7 more

Short 5’ UTRs serve as a marker for viral mRNA translation inhibition by the IFIT2-IFIT3 antiviral complex

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.11.637299

N/A

0DataRank · unranked

1 citations

Candace Todd, B. Cook, Agustina D’Urso, Shivani Khosla, Elena Estrada +17 more

KIF5A binds RNA to orchestrate synaptic mRNA localization and stress granules in ALS

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.31.685813

N/A

0DataRank · unranked

1 citations

Neeraj Lal, Shuhao Xu, Sara Mumford, Megan Huang, Yang Dong +10 more

Rational Generation of Monoclonal Antibodies and Intrabodies Selective for Pathogenic TDP-43

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.10.658846

N/A

0DataRank · unranked

0 citations

Sarah Louadi, Juliane Coutts, Ebrima Gibbs, Megan Y. Huang, Ryan J. Marina +10 more

Aberrant host mRNA partitioning in Ebola virus condensates driven by RNA folding perpetuates species-dependent interferon response

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.13.676059

N/A

0DataRank · unranked

0 citations

Dylan C. Lam, Clarence K. Mah, Reika Watanabe, Troy J. Comi, Troy Comi +7 more

Dosage-sensitive RBFOX2 autoregulation promotes cardiomyocyte differentiation by maturing the transcriptome

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.28.685214

N/A

0DataRank · unranked

0 citations

Feria A. Ladha, Yunxia Wang, Michael A. Trembley, Huimin Yin, Rongbin Zheng +14 more

G4C2 Repeat RNA Initiates a POM121-Mediated Reduction in Specific Nucleoporins in C9orf72 ALS/FTD

Neuron(2020)10.1016/j.neuron.2020.06.027

N/A

0DataRank · unranked

169 citations

Benjamin L. Zaepfel, Lindsey R. Hayes, Boris Fitchman, Yuval Salzberg, En‐Ching Luo +10 more

Heterogeneity and clonal relationships of adaptive immune cells in ulcerative colitis revealed by single-cell analyses

Science Immunology(2020)10.1126/sciimmunol.abb4432

N/A

0DataRank · unranked

287 citations

Zhaoren He, Matthew Tsai, Jocelyn G. Olvera, Kyla Omilusik, Han G. Duong +25 more

Early precursors and molecular determinants of tissue-resident memory CD8 + T lymphocytes revealed by single-cell RNA sequencing

Science Immunology(2020)10.1126/sciimmunol.aaz6894

N/A

0DataRank · unranked

224 citations

Zhaoren He, Tiani L. Louis, J. Justin Milner, Kyla Omilusik, Wenhao Jin +13 more

Large-scale tethered function assays identify factors that regulate mRNA stability and translation

Nature Structural & Molecular Biology(2020)10.1038/s41594-020-0477-6

N/A

0DataRank · unranked

135 citations

Jason L. Nathanson, Frederick E. Tan, Joshua L. Schwartz, Jonathan C. Schmok, Archana Shankar +10 more

Zmat3 Is a Key Splicing Regulator in the p53 Tumor Suppression Program

Molecular Cell(2020)10.1016/j.molcel.2020.10.022

N/A

0DataRank · unranked

123 citations

Alyssa M. Kaiser, David W. Morgens, Anthony M. Boutelle, José A. Seoane, Eric L. Van Nostrand +16 more

Pooled CRISPR screens with imaging on microraft arrays reveals stress granule-regulatory factors

Nature Methods(2020)10.1038/s41592-020-0826-8

N/A

0DataRank · unranked

96 citations

Anthony Q. Vu, Jaclyn M. Einstein, Matthew DiSalvo, Noorsher Ahmed, Eric L. Van Nostrand +5 more

Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells

Nature Communications(2020)10.1038/s41467-020-14312-1

N/A

0DataRank · unranked

60 citations

Isaac A. Chaim, Jorge A. Benítez, Sebastian Markmiller, Alison D. Parisian, Robert F. Hevner +16 more

G Yeo

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