Steven J.M. Jones

Canada's Michael Smith Genome Sciences Centre

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

145Author DataRank

Indexed papers

26in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 26 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Papers

Driven by 72 papers — median percentile 97. Top paper: “Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project”.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Initial sequencing and comparative analysis of the mouse genome

Nature(2002)10.1038/nature01262

Top 1%

12.6DataRank

Top 1%7282 citations

Robert H. Waterston, Kerstin Lindblad‐Toh, Julien Lagarde, Josep F. Abril, PANKAJ AGARWAL +189 more

GENCODE: The reference human genome annotation for The ENCODE Project

Genome Research(2012)10.1101/gr.135350.111

Top 1%

12.0DataRank

Top 1%5084 citations

Michael G. FitzGerald, Electra Tapanari, Mark Diekhans, Felix Kokocinski, Rizi Ai +42 more

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

Genome Research(2009)10.1101/gr.080531.108

Top 1%

12.0DataRank

Top 1%592 citations

Jennifer Harrow, Rachel A. Harte, Craig Wallin, Mark Diekhans, Bin Ma +52 more

Comprehensive genomic characterization of squamous cell lung cancers

Nature(2012)10.1038/nature11404

Top 1%

11.0DataRank

Top 1%4036 citations

Gad Getz, Stephen E. Schumacher, Petar Stojanov, Chang‐Jiun Wu, Hailei Zhang +326 more

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

Integrative analysis of 111 reference human epigenomes

Nature(2015)10.1038/nature14248

Top 1%

10.0DataRank

Top 1%7189 citations

Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen +93 more

Locating mammalian transcription factor binding sites: A survey of computational and experimental techniques

Genome Research(2006)10.1101/gr.4140006

N/A

9.3DataRank · unranked

219 citations

Victor X. Jin, Peggy J. Farnham, Steven J.M. Jones, Laura Elnitski

A framework for human microbiome research

Nature(2012)10.1038/nature11209

Top 2%

8.4DataRank

Top 2%2766 citations

Barbara A. Methé, William Nelson, Mihai Pop, Heather H. Creasy, Michelle Giglio +236 more

Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel

Nature Communications(2014)10.1038/ncomms4934

Top 2%

8.3DataRank

Top 2%460 citations

Jonathan Marchini, Peter Donnelly, Gerton Lunter, Jonathan L. Marchini, Simon Myers +364 more

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

Cell(2018)10.1016/j.cell.2018.02.052

Top 2%

8.1DataRank

Top 2%3980 citations

Katherine A. Hoadley, Laila M. Poisson, Alexander J. Lazar, Andrew D. Cherniack, Albert J. Kovatich +866 more

A high-resolution map of human evolutionary constraint using 29 mammals

Nature(2011)10.1038/nature10530

Top 2%

7.6DataRank

Top 2%1227 citations

Genome Institute at Washington University, Manuel Garber, Or Zuk, Alireza Heravi-Moussavi, Wouter Meuleman +49 more

Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

Cell(2018)10.1016/j.cell.2018.03.033

Top 3%

6.4DataRank

Top 3%447 citations

Matthew H. Bailey, Hoifung Poon, Vesteinn Thorsson, Antonio Colaprico, Andreas Bender +883 more

GA4GH: International policies and standards for data sharing across genomic research and healthcare

Cell Genomics(2021)10.1016/j.xgen.2021.100029

N/A

6.0DataRank · unranked

306 citations

Angela Page, Lindsay Smith, Jeremy Adams, Gil Alterovitz, Lawrence Babb +95 more

Pan-cancer analysis of whole genomes

Nature(2020)10.1038/s41586-020-1969-6

Top 3%

5.9DataRank

Top 3%3307 citations

Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams +1244 more

The Human Pangenome Project: a global resource to map genomic diversity

Nature(2022)10.1038/s41586-022-04601-8

Top 4%

5.6DataRank

Top 4%571 citations

Lucinda Antonacci-Fulton, Thibaut Hourlier, Heather A. Lawson, Julian K. Lucas, Adam M. Phillippy +36 more

Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas

Cell Reports(2018)10.1016/j.celrep.2018.03.046

N/A

5.5DataRank · unranked

186 citations

Francisco Sanchez-Vega, Konnor C. La, Joshua Armenia, Walid K. Chatila, Augustin Luna +869 more

Three Periods of Regulatory Innovation During Vertebrate Evolution

Science(2011)10.1126/science.1202702

N/A

4.9DataRank · unranked

143 citations

Sharon L. R. Kardia, Olof Emanuelsson, Alexander Stark, Michele Clamp, Sofie R. Salama +6 more

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Nature(2020)10.1038/s41586-020-1965-x

Top 5%

4.6DataRank

Top 5%668 citations

Federico Abascal, Jeremiah A. Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj +1240 more

Tigmint: correcting assembly errors using linked reads from large molecules

BMC Bioinformatics(2018)10.1186/s12859-018-2425-6

N/A

3.3DataRank · unranked

138 citations

Lauren Coombe, Justin Chu, Rene L. Warren, Benjamin P. Vandervalk, Sarah Yeo +6 more

The Share of Human Genomic DNA under Selection Estimated from Human-Mouse Genomic Alignments

Cold Spring Harbor Symposia on Quantitative Biology(2003)10.1101/sqb.2003.68.245

N/A

2.9DataRank · unranked

63 citations

R.J. WEBER, Bruce A. Roe, Nicholas J. Dickens, Eoghan Harrington, Francesca Chiaromonte +5 more

Whole-genome and transcriptome analysis enhances precision cancer treatment options

Annals of Oncology(2022)10.1016/j.annonc.2022.05.522

Top 8%

2.9DataRank

Top 8%121 citations

Alexandra Böhm, Laura M. Williamson, Jessica Nelson, Yaoqing Shen, Melika Bonakdar +45 more

A Draft Human Pangenome Reference

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.09.499321

Top 8%

2.9DataRank

Top 8%74 citations

Mobin Asri, Daniel Doerr, Eoghan Harrington, Hickey, Glenn, Julian K. Lucas +47 more

Genome Graphs

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/101378

N/A

2.1DataRank · unranked

44 citations

Hickey, Glenn, Nicholas F. Parrish, Sean Blum, Abram Connelly, Alexander T Dilthey +22 more

Increased mutation and gene conversion within human segmental duplications

Nature(2023)10.1038/s41586-023-05895-y

N/A

2.1DataRank · unranked

114 citations

Philip C. Dishuck, William T. Harvey, William S. DeWitt, Xavi Guitart, Michael E. Goldberg +108 more

Erratum: Genome analysis of the platypus reveals unique signatures of evolution

Nature(2008)10.1038/nature07253

N/A

1.6DataRank · unranked

35 citations

LaDeana W. Hillier, Jennifer A. Marshall Graves, Kerstin Lindblad‐Toh, Elaine A. Ostrander, Frank Grützner +115 more

Structure, function and diversity of the healthy human microbiome

Nature(2012)10.1038/nature11234

N/A

1.4DataRank · unranked

10088 citations

Curtis Huttenhower, Dirk Gevers, Rob Knight, Sahar Abubucker, Jonathan H. Badger +235 more

Integrated genomic analyses of ovarian carcinoma

Nature(2011)10.1038/nature10166

N/A

1.3DataRank · unranked

8094 citations

Debra Bell, Andrew Berchuck, Michael J. Birrer, Jeremy Chien, D. W. Cramer +268 more

Oncogenic Signaling Pathways in The Cancer Genome Atlas

Cell(2018)10.1016/j.cell.2018.03.035

N/A

1.2DataRank · unranked

3322 citations

Marco Mina, Joshua Armenia, Walid K. Chatila, Augustin Luna, Konnor C. La +891 more

Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway

Cell Reports(2021)10.1016/j.celrep.2021.108707

N/A

1.1DataRank · unranked

32 citations

Xiaotong Yao, Siddhartha Devarakonda, Aditya Deshpande, Jeffrey S. Damrauer, Tiago C. Silva +77 more

ARID1A Mutations in Endometriosis-Associated Ovarian Carcinomas

New England Journal of Medicine(2010)10.1056/nejmoa1008433

N/A

1.1DataRank · unranked

1683 citations

Sohrab P. Shah, Osama M. Al-Agha, Yongjun Zhao, Kane Tse, Thomas Zeng +49 more

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

Nature Methods(2009)10.1038/nmeth.1363

N/A

1.1DataRank · unranked

1580 citations

John W. Wallis, Michael D. McLellan, Ilya Shlyakhter, Joelle M Kalicki, Mircea Podar +13 more

CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase

Nucleic Acids Research(2022)10.1093/nar/gkac979

Top 19%

1.0DataRank

Top 19%46 citations

Arpad Danos, Jason Saliba, Joshua F. McMichael, Adam Coffman, Susanna Kiwala +60 more

Loss-of-function mutations in Notch receptors in cutaneous and lung squamous cell carcinoma

Proceedings of the National Academy of Sciences(2011)10.1073/pnas.1114669108

N/A

0.923DataRank · unranked

468 citations

Zachary Sanborn, Kelly L. Arnett, Laura J. Bayston, Wilson Liao, Charlotte M. Proby +33 more

Long-read sequencing of an advanced cancer cohort resolves rearrangements, unravels haplotypes, and reveals methylation landscapes

Cell Genomics(2024)10.1016/j.xgen.2024.100674

Top 25%

0.822DataRank

Top 25%31 citations

Erin Pleasance, Jeremy Fan, Vahid Akbari, Glenn Chang, Katherine Dixon +33 more

Whole genome and transcriptome integrated analyses guide clinical care of pediatric poor prognosis cancers

Nature Communications(2024)10.1038/s41467-024-48363-5

N/A

0.789DataRank · unranked

19 citations

Yaoqing Shen, Emma Titmuss, Katherine Dixon, Laura M. Williamson, Erin Pleasance +26 more

Automated assembly of high-quality diploid human reference genomes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.06.483034

Top 28%

0.719DataRank

Top 28%22 citations

Giulio Formenti, Arang Rhie, Andrea Guarracino, Chentao Yang, Jonathan M. D. Wood +77 more

Recombination between heterologous human acrocentric chromosomes

Nature(2023)10.1038/s41586-023-05976-y

N/A

0.710DataRank · unranked

113 citations

Silvia Buonaiuto, Leonardo Gomes de Lima, Tamara Potapova, Arang Rhie, Sergey Koren +106 more

The transcriptional landscape of Shh medulloblastoma

Nature Communications(2021)10.1038/s41467-021-21883-0

N/A

0.688DataRank · unranked

97 citations

Hamza Farooq, Florence M.G. Cavalli, A. Sorana Morrissy, Michelle Ly, Liam D. Hendrikse +94 more

Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade–specific epigenome and transcriptome landscapes

Nature Genetics(2020)10.1038/s41588-020-0673-7

N/A

0.657DataRank · unranked

79 citations

Vanessa Porter, Zusheng Zong, Reanne Bowlby, Emma Titmuss, Constance Namirembe +27 more

Epigenomic Programming in Early Fetal Brain Development

Epigenomics(2020)10.2217/epi-2019-0319

Top 32%

0.618DataRank

Top 32%15 citations

Cécile L. Maire, Misha Bilenky, Annaïck Carles, Alireza Heravi‐Moussavi, Chibo Hong +18 more

RETRACTED ARTICLE: Tumor necrosis factor overcomes immune evasion in p53-mutant medulloblastoma

Nature Neuroscience(2020)10.1038/s41593-020-0628-4

N/A

0.561DataRank · unranked

41 citations

Hiromichi Suzuki, Svasti Haricharan, Lianne Q. Chau, Meher Beigi Masihi, Jessica M. Rusert +35 more

A platform for oncogenomic reporting and interpretation

Nature Communications(2022)10.1038/s41467-022-28348-y

N/A

0.416DataRank · unranked

15 citations

Laura M. Williamson, Erin Pleasance, Anna Davies, Brayden Pellegrini, Dustin W. Bleile +28 more

Long-read sequencing of an advanced cancer cohort resolves rearrangements, unravels haplotypes, and reveals methylation landscapes

medRxiv(2024)10.1101/2024.02.20.24302959

Top 47%

0.389DataRank

Top 47%6 citations

Erin Pleasance, Jeremy Fan, Vahid Akbari, Glenn Chang, Katherine Dixon +32 more

Complex Autism Spectrum Disorder with Epilepsy, Strabismus and Self-Injurious Behaviors in a Patient with a De Novo Heterozygous POLR2A Variant

Genes(2022)10.3390/genes13030470

N/A

0.360DataRank · unranked

10 citations

Ying Qiao, Brett Trost, Kristina Calli, Sally Martell, Steven J.M. Jones +3 more

Failure to replicate the association of rare loss-of-function variants in type I IFN immunity genes with severe COVID-19

medRxiv(2020)10.1101/2020.12.18.20248226

N/A

0.360DataRank · unranked

10 citations

Guillaume Butler‐Laporte, Ning Shang, Chen Weng, Atlas Khan, Manal Alaamery +44 more

Using the linear references from the pangenome to discover missing autism variants

Nature Communications(2026)10.1038/s41467-026-68378-4

Top 65%

0.208DataRank

Top 65%3 citations

Jiadong Lin, Michelle D. Noyes, Young-Jun Kwon, Isaac Wong, Nidhi Koundinya +252 more

Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Communications Biology(2022)10.1038/s42003-022-03769-z

N/A

0.165DataRank · unranked

2 citations

Lars Feuerbach, Chen Hong, David Mas-Ponte, Randi Istrup Pedersen, PCAWG Drivers and Functional Interpretation Group +1255 more

The Somatic Genomic Landscape of Chromophobe Renal Cell Carcinoma

UNC Libraries(2020)10.17615/bd0j-6b91

N/A

0DataRank · unranked

0 citations

Kristen M. Leraas, Angela B. Smith, Michael J. Seiler, A. B. Clarke, Mark A. Jensen +95 more

Human placental cytotrophoblast epigenome dynamics over gestation and alterations in placental disease

Developmental Cell(2021)10.1016/j.devcel.2021.04.001

N/A

0DataRank · unranked

69 citations

M. Yvonne Kim, GiNell Elliot, Yan Zhou, Guangfeng Zhao, Daofeng Li +18 more

miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancer

UNC Libraries(2020)10.17615/zrq5-5095

N/A

0DataRank · unranked

3 citations

Denise Brooks, Preethi H. Gunaratne, Payal Sipahimalani, Clara Chan, Jacquie Schein +23 more

Rearrangement-mediated cis-regulatory alterations in advanced patient tumors reveal interactions with therapy

Cell Reports(2021)10.1016/j.celrep.2021.110023

N/A

0DataRank · unranked

15 citations

Fengju Chen, Erin Pleasance, Laura M. Williamson, Cameron J. Grisdale, Emma Titmuss +6 more

Early-stage economic analysis of research-based comprehensive genomic sequencing for advanced cancer care

Journal of Community Genetics(2021)10.1007/s12687-021-00557-w

N/A

0DataRank · unranked

10 citations

Janessa Laskin, Steven J.M. Jones, Robyn Roscoe, Howard J. Lim, Daniel J. Renouf +6 more

A Platform for Oncogenomic Reporting and Interpretation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.13.439667

N/A

0DataRank · unranked

2 citations

Laura M. Williamson, Erin Pleasance, Anna Davies, Brayden Pellegrini, Dustin W. Bleile +27 more

Evolution of the open-access CIViC knowledgebase is driven by the needs of the cancer variant interpretation community

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.13.448171

Top 100%

0DataRank

Top 100%0 citations

Arpad Danos, Susanna Kiwala, Joshua F. McMichael, Adam Coffman, Erica K. Barnell +47 more

Integration of Whole-Genome Sequencing With Circulating Tumor DNA Analysis Captures Clonal Evolution and Tumor Heterogeneity in Non-V600 BRAF Mutant Colorectal Cancer

Clinical Colorectal Cancer(2020)10.1016/j.clcc.2020.02.001

N/A

0DataRank · unranked

2 citations

Miguel Alcaide, James T. Topham, Benny Johnson, Ryan D. Morin, Jenny E. Chu +11 more

NHJ-1 Is Required for Canonical Nonhomologous End Joining in Caenorhabditis elegans

Genetics(2020)10.1534/genetics.120.303328

N/A

0DataRank · unranked

6 citations

Steven J.M. Jones, Monique Zetka, Aleksandar Vujin

rAAV-compatible MiniPromoters for restricted expression in the brain and eye

UNC Libraries(2020)10.17615/p7rb-bh63

N/A

0DataRank · unranked

0 citations

Lisa Borretta, Michelle X. Zhou, Stéphanie Laprise, Robert A. Holt, George Yang +20 more

A p53 transcriptional signature in primary and metastatic cancers derived using machine learning

Frontiers in Genetics(2022)10.3389/fgene.2022.987238

N/A

0DataRank · unranked

9 citations

Erin Pleasance, Tyler Kolisnik, Steven J.M. Jones, Faeze Keshavarz-Rahaghi

Diagnostic and Therapeutic Implications of a FUS::TFCP2 Fusion and ALK Activation in a Metastatic Rhabdomyosarcoma

Genes Chromosomes and Cancer(2024)10.1002/gcc.23259

N/A

0DataRank · unranked

12 citations

Cameron J. Grisdale, Laura Williamson, Howard J. Lim, Lawrence Lee, Daniel J. Renouf +5 more

“I Just Assumed This Was Already Being Done”: Canadian Patient Preferences for Enhanced Data Sharing for Precision Oncology

JCO Precision Oncology(2024)10.1200/po.24.00184

N/A

0DataRank · unranked

1 citations

Morgan Ehman, Anna Hermansen, Deirdre Weymann, Emanuel Krebs, Cheryl Ho +10 more

Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer

UNC Libraries(2020)10.17615/s3ab-0w32

N/A

0DataRank · unranked

0 citations

Gordon B. Mills, Nilsa C. Ramirez, Andrew J. Mungall, Hailei Zhang, Nikolaus Schultz +95 more

The benefit of a complete reference genome for cancer structural variant analysis

medRxiv(2024)10.1101/2024.03.15.24304369

N/A

0DataRank · unranked

4 citations

Jeremy Fan, Kieran O’Neill, Erin Pleasance, Vanessa Porter, Steven J.M. Jones +2 more

A nuclear TRiC/CCT chaperonin assembles meiotic HORMAD proteins into chromosome axes competent for crossing over

Nature Communications(2025)10.1038/s41467-025-64403-0

N/A

0DataRank · unranked

2 citations

Amirhossein Pezeshki, Ryan Dawson, Pim J. Huis in ’t Veld, Steven J.M. Jones, Nicola Silva +1 more

Closing the gaps, and improving somatic structural variant analysis and benchmarking using CHM13-T2T

Genome Research(2025)10.1101/gr.279352.124

N/A

0DataRank · unranked

7 citations

Jeremy Fan, Kieran O’Neill, Erin Pleasance, Vanessa Porter, Steven J.M. Jones +2 more

Evaluating Language Models for Biomedical Fact-Checking: A Benchmark Dataset for Cancer Variant Interpretation Verification

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.10.675443

N/A

0DataRank · unranked

2 citations

Cameron J. Grisdale, Kilannin Krysiak, Arpad Danos, Mariam Khanfar, Erin Pleasance +10 more

Protocol for assessing distances in pathway space for classifier feature sets from machine learning methods

STAR Protocols(2025)10.1016/j.xpro.2025.103681

N/A

0DataRank · unranked

0 citations

Victor H Apolonio, Vinicius S Chagas, Christopher K. Wong, Jordan Lee, Christina Yau +61 more

Protocol for obtaining cancer type and subtype predictions using subSCOPE

STAR Protocols(2025)10.1016/j.xpro.2025.103705

N/A

0DataRank · unranked

0 citations

A. Gordon Robertson, Kyle Ellrott, Christopher K. Wong, Jordan Lee, Christina Yau +54 more

Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower

Nature Communications(2022)10.1038/s41467-022-32343-8

N/A

0DataRank · unranked

0 citations

PCAWG Drivers and Functional Interpretation Working Group, Federico Abascal, Samirkumar B. Amin, Pratiti Bandopadhayay, Rameen Beroukhim +1242 more

Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH -Mutant Molecular Profiles

UNC Libraries(2020)10.17615/7ms0-1a34

N/A

0DataRank · unranked

0 citations

Umadevi Veluvolu, Mario Berríos, David E. Kleiner, Donghui Tan, Johanna Gardner +95 more

Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation

UNC Libraries(2020)10.17615/w7eb-nd66

N/A

0DataRank · unranked

0 citations

Sara Gonzalez-Hilarion, Damien Paulet, Yen‐Ping Hsueh, Jean‐Yves Coppée, Anna Floyd Averette +27 more

Megastudies improve the impact of applied behavioural science

Nature(2021)10.1038/s41586-021-04128-4

N/A

0DataRank · unranked

259 citations

Dena M. Gromet, Hung S. Ho, Joseph Kay, Timothy W. Lee, Pepi Pandiloski +38 more

Steven J.M. Jones

Indexed papers

Top data-sharing exemplar

Papers